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Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School November 2017 Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E. Hepner University of South Florida, [email protected] Follow this and additional works at: https://scholarcommons.usf.edu/etd Part of the Biology Commons, Ecology and Evolutionary Biology Commons, and the Other Oceanography and Atmospheric Sciences and Meteorology Commons Scholar Commons Citation Hepner, Megan E., "Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary" (2017). Graduate Theses and Dissertations. https://scholarcommons.usf.edu/etd/7408 This Thesis is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary by Megan E. Hepner A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science Marine Science with a concentration in Marine Resource Assessment College of Marine Science University of South Florida Major Professor: Frank Muller-Karger, Ph.D. Christopher Stallings, Ph.D. Steve Gittings, Ph.D. Date of Approval: October 31st, 2017 Keywords: Species richness, biodiversity, functional diversity, species traits Copyright © 2017, Megan E. Hepner ACKNOWLEDGMENTS I am indebted to my major advisor, Dr. Frank Muller-Karger, who provided opportunities for me to strengthen my skills as a researcher on research cruises, dive surveys, and in the laboratory, and as a communicator through oral and presentations at conferences, and for encouraging my participation as a full team member in various meetings of the Marine Biodiversity Observation Network (MBON) and other science meetings. -
1 Exon Probe Sets and Bioinformatics Pipelines for All Levels of Fish Phylogenomics
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.18.949735; this version posted February 19, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics 2 3 Lily C. Hughes1,2,3,*, Guillermo Ortí1,3, Hadeel Saad1, Chenhong Li4, William T. White5, Carole 4 C. Baldwin3, Keith A. Crandall1,2, Dahiana Arcila3,6,7, and Ricardo Betancur-R.7 5 6 1 Department of Biological Sciences, George Washington University, Washington, D.C., U.S.A. 7 2 Computational Biology Institute, Milken Institute of Public Health, George Washington 8 University, Washington, D.C., U.S.A. 9 3 Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian 10 Institution, Washington, D.C., U.S.A. 11 4 College of Fisheries and Life Sciences, Shanghai Ocean University, Shanghai, China 12 5 CSIRO Australian National Fish Collection, National Research Collections of Australia, 13 Hobart, TAS, Australia 14 6 Sam Noble Oklahoma Museum of Natural History, Norman, O.K., U.S.A. 15 7 Department of Biology, University of Oklahoma, Norman, O.K., U.S.A. 16 17 *Corresponding author: Lily C. Hughes, [email protected]. 18 Current address: Department of Organismal Biology and Anatomy, University of Chicago, 19 Chicago, IL. 20 21 Keywords: Actinopterygii, Protein coding, Systematics, Phylogenetics, Evolution, Target 22 capture 23 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.02.18.949735; this version posted February 19, 2020. -
Blenniiformes, Tripterygiidae) from Taiwan
A peer-reviewed open-access journal ZooKeys 216: 57–72 (2012) A new species of the genus Helcogramma from Taiwan 57 doi: 10.3897/zookeys.216.3407 RESEARCH articLE www.zookeys.org Launched to accelerate biodiversity research A new species of the genus Helcogramma (Blenniiformes, Tripterygiidae) from Taiwan Min-Chia Chiang1,†, I-Shiung Chen1,2,‡ 1 Institute of Marine Biology, National Taiwan Ocean University, Keelung 202, Taiwan, ROC 2 Center for Mari- ne Bioenvironment and Biotechnology (CMBB), National Taiwan Ocean University, Keelung 202, Taiwan, ROC † urn:lsid:zoobank.org:author:D82C98B9-D9AA-46E1-83F7-D8BB74776122 ‡ urn:lsid:zoobank.org:author:6094BBA6-5EE6-420F-BAA5-F52D44F11F14 Corresponding author: I-Shiung Chen ([email protected]) Academic editor: Carole Baldwin | Received 19 May 2012 | Accepted 13 August 2012 | Published 21 August 2012 urn:lsid:zoobank.org:pub:2D3E6BCC-171E-4702-B759-E7D7FCEA88DB Citation: Chiang M-C, Chen I-S (2012) A new species of the genus Helcogramma (Blenniiformes, Tripterygiidae) from Taiwan. ZooKeys 216: 57–72. doi: 10.3897/zookeys.216.3407 Abstract A new species of triplefin fish (Blenniiformes: Tripterygiidae), Helcogramma williamsi, is described from six specimens collected from southern Taiwan. This species is well distinguished from its congeners by possess- ing 13 second dorsal-fin spines; third dorsal-fin rays modally 11; anal-fin rays modally 19; pored scales in lateral line 22-24; dentary pore pattern modally 5+1+5; lobate supraorbital cirrus; broad, serrated or pal- mate nasal cirrus; first dorsal fin lower in height than second; males with yellow mark extending from ante- rior tip of upper lip to anterior margin of eye and a whitish blue line extending from corner of mouth onto preopercle. -
Early Stages of Fishes in the Western North Atlantic Ocean Volume
ISBN 0-9689167-4-x Early Stages of Fishes in the Western North Atlantic Ocean (Davis Strait, Southern Greenland and Flemish Cap to Cape Hatteras) Volume One Acipenseriformes through Syngnathiformes Michael P. Fahay ii Early Stages of Fishes in the Western North Atlantic Ocean iii Dedication This monograph is dedicated to those highly skilled larval fish illustrators whose talents and efforts have greatly facilitated the study of fish ontogeny. The works of many of those fine illustrators grace these pages. iv Early Stages of Fishes in the Western North Atlantic Ocean v Preface The contents of this monograph are a revision and update of an earlier atlas describing the eggs and larvae of western Atlantic marine fishes occurring between the Scotian Shelf and Cape Hatteras, North Carolina (Fahay, 1983). The three-fold increase in the total num- ber of species covered in the current compilation is the result of both a larger study area and a recent increase in published ontogenetic studies of fishes by many authors and students of the morphology of early stages of marine fishes. It is a tribute to the efforts of those authors that the ontogeny of greater than 70% of species known from the western North Atlantic Ocean is now well described. Michael Fahay 241 Sabino Road West Bath, Maine 04530 U.S.A. vi Acknowledgements I greatly appreciate the help provided by a number of very knowledgeable friends and colleagues dur- ing the preparation of this monograph. Jon Hare undertook a painstakingly critical review of the entire monograph, corrected omissions, inconsistencies, and errors of fact, and made suggestions which markedly improved its organization and presentation. -
Satellite Monitoring of Coastal Marine Ecosystems a Case from the Dominican Republic
Satellite Monitoring of Coastal Marine Ecosystems: A Case from the Dominican Republic Item Type Report Authors Stoffle, Richard W.; Halmo, David Publisher University of Arizona Download date 04/10/2021 02:16:03 Link to Item http://hdl.handle.net/10150/272833 SATELLITE MONITORING OF COASTAL MARINE ECOSYSTEMS A CASE FROM THE DOMINICAN REPUBLIC Edited By Richard W. Stoffle David B. Halmo Submitted To CIESIN Consortium for International Earth Science Information Network Saginaw, Michigan Submitted From University of Arizona Environmental Research Institute of Michigan (ERIM) University of Michigan East Carolina University December, 1991 TABLE OF CONTENTS List of Tables vi List of Figures vii List of Viewgraphs viii Acknowledgments ix CHAPTER ONE EXECUTIVE SUMMARY 1 The Human Dimensions of Global Change 1 Global Change Research 3 Global Change Theory 4 Application of Global Change Information 4 CIESIN And Pilot Research 5 The Dominican Republic Pilot Project 5 The Site 5 The Research Team 7 Key Findings 7 CAPÍTULO UNO RESUMEN GENERAL 9 Las Dimensiones Humanas en el Cambio Global 9 La Investigación del Cambio Global 11 Teoría del Cambio Global 12 Aplicaciones de la Información del Cambio Global 13 CIESIN y la Investigación Piloto 13 El Proyecto Piloto en la República Dominicana 14 El Lugar 14 El Equipo de Investigación 15 Principales Resultados 15 CHAPTER TWO REMOTE SENSING APPLICATIONS IN THE COASTAL ZONE 17 Coastal Surveys with Remote Sensing 17 A Human Analogy 18 Remote Sensing Data 19 Aerial Photography 19 Landsat Data 20 GPS Data 22 Sonar -
Table S1.Xlsx
Bone type Bone type Taxonomy Order/series Family Valid binomial Outdated binomial Notes Reference(s) (skeletal bone) (scales) Actinopterygii Incertae sedis Incertae sedis Incertae sedis †Birgeria stensioei cellular this study †Birgeria groenlandica cellular Ørvig, 1978 †Eurynotus crenatus cellular Goodrich, 1907; Schultze, 2016 †Mimipiscis toombsi †Mimia toombsi cellular Richter & Smith, 1995 †Moythomasia sp. cellular cellular Sire et al., 2009; Schultze, 2016 †Cheirolepidiformes †Cheirolepididae †Cheirolepis canadensis cellular cellular Goodrich, 1907; Sire et al., 2009; Zylberberg et al., 2016; Meunier et al. 2018a; this study Cladistia Polypteriformes Polypteridae †Bawitius sp. cellular Meunier et al., 2016 †Dajetella sudamericana cellular cellular Gayet & Meunier, 1992 Erpetoichthys calabaricus Calamoichthys sp. cellular Moss, 1961a; this study †Pollia suarezi cellular cellular Meunier & Gayet, 1996 Polypterus bichir cellular cellular Kölliker, 1859; Stéphan, 1900; Goodrich, 1907; Ørvig, 1978 Polypterus delhezi cellular this study Polypterus ornatipinnis cellular Totland et al., 2011 Polypterus senegalus cellular Sire et al., 2009 Polypterus sp. cellular Moss, 1961a †Scanilepis sp. cellular Sire et al., 2009 †Scanilepis dubia cellular cellular Ørvig, 1978 †Saurichthyiformes †Saurichthyidae †Saurichthys sp. cellular Scheyer et al., 2014 Chondrostei †Chondrosteiformes †Chondrosteidae †Chondrosteus acipenseroides cellular this study Acipenseriformes Acipenseridae Acipenser baerii cellular Leprévost et al., 2017 Acipenser gueldenstaedtii -
Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. -
Checklist of Marine Demersal Fishes Captured by the Pair Trawl Fisheries in Southern (RJ-SC) Brazil
Biota Neotropica 19(1): e20170432, 2019 www.scielo.br/bn ISSN 1676-0611 (online edition) Inventory Checklist of marine demersal fishes captured by the pair trawl fisheries in Southern (RJ-SC) Brazil Matheus Marcos Rotundo1,2,3,4 , Evandro Severino-Rodrigues2, Walter Barrella4,5, Miguel Petrere Jun- ior3 & Milena Ramires4,5 1Universidade Santa Cecilia, Acervo Zoológico, R. Oswaldo Cruz, 266, CEP11045-907, Santos, SP, Brasil 2Instituto de Pesca, Programa de Pós-graduação em Aquicultura e Pesca, Santos, SP, Brasil 3Universidade Federal de São Carlos, Programa de Pós-Graduação em Planejamento e Uso de Recursos Renováveis, Rodovia João Leme dos Santos, Km 110, CEP 18052-780, Sorocaba, SP, Brasil 4Universidade Santa Cecília, Programa de Pós-Graduação de Auditoria Ambiental, R. Oswaldo Cruz, 266, CEP11045-907, Santos, SP, Brasil 5Universidade Santa Cecília, Programa de Pós-Graduação em Sustentabilidade de Ecossistemas Costeiros e Marinhos, R. Oswaldo Cruz, 266, CEP11045-907, Santos, SP, Brasil *Corresponding author: Matheus Marcos Rotundo: [email protected] ROTUNDO, M.M., SEVERINO-RODRIGUES, E., BARRELLA, W., PETRERE JUNIOR, M., RAMIRES, M. Checklist of marine demersal fishes captured by the pair trawl fisheries in Southern (RJ-SC) Brazil. Biota Neotropica. 19(1): e20170432. http://dx.doi.org/10.1590/1676-0611-BN-2017-0432 Abstract: Demersal fishery resources are abundant on continental shelves, on the tropical and subtropical coasts, making up a significant part of the marine environment. Marine demersal fishery resources are captured by various fishing methods, often unsustainably, which has led to the depletion of their stocks. In order to inventory the marine demersal ichthyofauna on the Southern Brazilian coast, as well as their conservation status and distribution, this study analyzed the composition and frequency of occurrence of fish captured by pair trawling in 117 fishery fleet landings based in the State of São Paulo between 2005 and 2012. -
Coral Injuries Caused by Spirobranchus Opercula with and Without Epibiotic Turf Algae at Curaçao
Marine Biology (2019) 166:60 https://doi.org/10.1007/s00227-019-3504-6 SHORT NOTE Coral injuries caused by Spirobranchus opercula with and without epibiotic turf algae at Curaçao Bert W. Hoeksema1,2 · Dagmar Wels1 · Roeland J. van der Schoot1 · Harry A. ten Hove1 Received: 11 January 2019 / Accepted: 26 March 2019 © The Author(s) 2019 Abstract Reef-dwelling Christmas tree worms (Spirobranchus spp.) are common coral associates. Their calcareous tubes are usually embedded in the coral skeleton and can be closed by an operculum. Tubes not overgrown by coral tissue either remain bare or become covered by algae. Despite their widespread distribution, high abundance and striking appearance, little is known about the impact of these worms on their hosts. We quantifed visible coral damage caused by Spirobranchus in Curaçao (Southern Caribbean) and found that 62.6% of worm opercula (n = 1323) caused abrasions and tissue loss in their hosts. Filamentous turf algae, known to be potentially harmful to corals, covered 76.9% of the opercula. Examination of the six most frequently inhabited host species showed a variation in the damage percentages, although this was independent of the presence of epibiotic algae on 78.4% of all opercula. Since injured corals are more susceptible to diseases, the overall nega- tive impact of Spirobranchus worms on their hosts may be more severe than previously assumed. Introduction and Nishihira 1996), even if the host becomes overgrown by sponges and octocorals, which in turn can act as replacement Coral-dwelling tubeworms of the genus Spirobranchus hosts (Hoeksema et al. 2015, 2016; García-Hernández and (Polychaeta: Serpulidae), known popularly as Christmas Hoeksema 2017). -
Feeding Guilds Among Artificial-Reef Fishes in the Northern Gulf of Mexico Brian D
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Aquila Digital Community Gulf of Mexico Science Volume 14 Article 3 Number 2 Number 2 1996 Feeding Guilds Among Artificial-Reef Fishes in the Northern Gulf of Mexico Brian D. Nelson University of West Florida Stephen A. Bortone University of West Florida DOI: 10.18785/goms.1402.03 Follow this and additional works at: https://aquila.usm.edu/goms Recommended Citation Nelson, B. D. and S. A. Bortone. 1996. Feeding Guilds Among Artificial-Reef Fishes in the Northern Gulf of Mexico. Gulf of Mexico Science 14 (2). Retrieved from https://aquila.usm.edu/goms/vol14/iss2/3 This Article is brought to you for free and open access by The Aquila Digital Community. It has been accepted for inclusion in Gulf of Mexico Science by an authorized editor of The Aquila Digital Community. For more information, please contact [email protected]. Nelson and Bortone: Feeding Guilds Among Artificial-Reef Fishes in the Northern Gulf Gulf of Mexico Scimce, 1996(2), pp. 66-80 Feeding Guilds Among Artificial-Reef Fishes in the Northern Gulf of Mexico BRIAN D. NELSON AND STEPHEN A. BORTONE To examine the diets of 25 demersal artificial-reef-associated fish species, 540 fishes were collected with spears and hand-nets off Panama City, Florida, in the summer of 1993. Fishes were preserved whole in the field. Stomach contents were later analyzed by frequency of occurrence, numerical abundance, and percent volume. These measures were combined into an Index of Relative Importance (IRI). -
Hotspots, Extinction Risk and Conservation Priorities of Greater Caribbean and Gulf of Mexico Marine Bony Shorefishes
Old Dominion University ODU Digital Commons Biological Sciences Theses & Dissertations Biological Sciences Summer 2016 Hotspots, Extinction Risk and Conservation Priorities of Greater Caribbean and Gulf of Mexico Marine Bony Shorefishes Christi Linardich Old Dominion University, [email protected] Follow this and additional works at: https://digitalcommons.odu.edu/biology_etds Part of the Biodiversity Commons, Biology Commons, Environmental Health and Protection Commons, and the Marine Biology Commons Recommended Citation Linardich, Christi. "Hotspots, Extinction Risk and Conservation Priorities of Greater Caribbean and Gulf of Mexico Marine Bony Shorefishes" (2016). Master of Science (MS), Thesis, Biological Sciences, Old Dominion University, DOI: 10.25777/hydh-jp82 https://digitalcommons.odu.edu/biology_etds/13 This Thesis is brought to you for free and open access by the Biological Sciences at ODU Digital Commons. It has been accepted for inclusion in Biological Sciences Theses & Dissertations by an authorized administrator of ODU Digital Commons. For more information, please contact [email protected]. HOTSPOTS, EXTINCTION RISK AND CONSERVATION PRIORITIES OF GREATER CARIBBEAN AND GULF OF MEXICO MARINE BONY SHOREFISHES by Christi Linardich B.A. December 2006, Florida Gulf Coast University A Thesis Submitted to the Faculty of Old Dominion University in Partial Fulfillment of the Requirements for the Degree of MASTER OF SCIENCE BIOLOGY OLD DOMINION UNIVERSITY August 2016 Approved by: Kent E. Carpenter (Advisor) Beth Polidoro (Member) Holly Gaff (Member) ABSTRACT HOTSPOTS, EXTINCTION RISK AND CONSERVATION PRIORITIES OF GREATER CARIBBEAN AND GULF OF MEXICO MARINE BONY SHOREFISHES Christi Linardich Old Dominion University, 2016 Advisor: Dr. Kent E. Carpenter Understanding the status of species is important for allocation of resources to redress biodiversity loss. -
CBD Strategy and Action Plan
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