molecules Review ATP Analogues for Structural Investigations: Case Studies of a DnaB Helicase and an ABC Transporter 1,2, 1, , 1 3 Denis Lacabanne y, Thomas Wiegand * y , Nino Wili , Maria I. Kozlova , Riccardo Cadalbert 1, Daniel Klose 1, Armen Y. Mulkidjanian 3,4, Beat H. Meier 1,* and Anja Böckmann 5,* 1 Laboratory of Physical Chemistry, ETH Zurich, 8093 Zurich, Switzerland;
[email protected] (D.L.);
[email protected] (N.W.);
[email protected] (R.C.);
[email protected] (D.K.) 2 Medical Research Council Mitochondrial Biology Unit University of Cambridge, Cambridge Biomedical Campus, Keith Peters Building, Hills Road, Cambridge CB2 0XY, UK 3 Department of Physics, Osnabrueck University, 49069 Osnabrueck, Germany;
[email protected] (M.I.K.);
[email protected] (A.Y.M.) 4 School of Bioengineering and Bioinformatics and Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, 119234 Moscow, Russia 5 Molecular Microbiology and Structural Biochemistry UMR 5086 CNRS/Université de Lyon, Labex Ecofect, 69367 Lyon, France * Correspondence:
[email protected] (T.W.);
[email protected] (B.H.M.);
[email protected] (A.B.) These authors contributed equally to this work. y Academic Editor: Marilisa Leone Received: 17 October 2020; Accepted: 9 November 2020; Published: 12 November 2020 Abstract: Nucleoside triphosphates (NTPs) are used as chemical energy source in a variety of cell systems. Structural snapshots along the NTP hydrolysis reaction coordinate are typically obtained by adding stable, nonhydrolyzable adenosine triphosphate (ATP) -analogues to the proteins, with the goal to arrest a state that mimics as closely as possible a physiologically relevant state, e.g., the pre-hydrolytic, transition and post-hydrolytic states.