The Global Burden of Onchocerciasis in 1990
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The Functional Parasitic Worm Secretome: Mapping the Place of Onchocerca Volvulus Excretory Secretory Products
pathogens Review The Functional Parasitic Worm Secretome: Mapping the Place of Onchocerca volvulus Excretory Secretory Products Luc Vanhamme 1,*, Jacob Souopgui 1 , Stephen Ghogomu 2 and Ferdinand Ngale Njume 1,2 1 Department of Molecular Biology, Institute of Biology and Molecular Medicine, IBMM, Université Libre de Bruxelles, Rue des Professeurs Jeener et Brachet 12, 6041 Gosselies, Belgium; [email protected] (J.S.); [email protected] (F.N.N.) 2 Molecular and Cell Biology Laboratory, Biotechnology Unit, University of Buea, Buea P.O Box 63, Cameroon; [email protected] * Correspondence: [email protected] Received: 28 October 2020; Accepted: 18 November 2020; Published: 23 November 2020 Abstract: Nematodes constitute a very successful phylum, especially in terms of parasitism. Inside their mammalian hosts, parasitic nematodes mainly dwell in the digestive tract (geohelminths) or in the vascular system (filariae). One of their main characteristics is their long sojourn inside the body where they are accessible to the immune system. Several strategies are used by parasites in order to counteract the immune attacks. One of them is the expression of molecules interfering with the function of the immune system. Excretory-secretory products (ESPs) pertain to this category. This is, however, not their only biological function, as they seem also involved in other mechanisms such as pathogenicity or parasitic cycle (molting, for example). Wewill mainly focus on filariae ESPs with an emphasis on data available regarding Onchocerca volvulus, but we will also refer to a few relevant/illustrative examples related to other worm categories when necessary (geohelminth nematodes, trematodes or cestodes). -
Cytomegalovirus Retinitis: a Manifestation of the Acquired Immune Deficiency Syndrome (AIDS)*
Br J Ophthalmol: first published as 10.1136/bjo.67.6.372 on 1 June 1983. Downloaded from British Journal ofOphthalmology, 1983, 67, 372-380 Cytomegalovirus retinitis: a manifestation of the acquired immune deficiency syndrome (AIDS)* ALAN H. FRIEDMAN,' JUAN ORELLANA,'2 WILLIAM R. FREEMAN,3 MAURICE H. LUNTZ,2 MICHAEL B. STARR,3 MICHAEL L. TAPPER,4 ILYA SPIGLAND,s HEIDRUN ROTTERDAM,' RICARDO MESA TEJADA,8 SUSAN BRAUNHUT,8 DONNA MILDVAN,6 AND USHA MATHUR6 From the 2Departments ofOphthalmology and 6Medicine (Infectious Disease), Beth Israel Medical Center; 3Ophthalmology, "Medicine (Infectious Disease), and 'Pathology, Lenox Hill Hospital; 'Ophthalmology, Mount Sinai School ofMedicine; 'Division of Virology, Montefiore Hospital and Medical Center; and the 8Institute for Cancer Research, Columbia University College ofPhysicians and Surgeons, New York, USA SUMMARY Two homosexual males with the 'gay bowel syndrome' experienced an acute unilateral loss of vision. Both patients had white intraretinal lesions, which became confluent. One of the cases had a depressed cell-mediated immunity; both patients ultimately died after a prolonged illness. In one patient cytomegalovirus was cultured from a vitreous biopsy. Autopsy revealed disseminated cytomegalovirus in both patients. Widespread retinal necrosis was evident, with typical nuclear and cytoplasmic inclusions of cytomegalovirus. Electron microscopy showed herpes virus, while immunoperoxidase techniques showed cytomegalovirus. The altered cell-mediated response present in homosexual patients may be responsible for the clinical syndromes of Kaposi's sarcoma and opportunistic infection by Pneumocystis carinii, herpes simplex, or cytomegalovirus. http://bjo.bmj.com/ Retinal involvement in adult cytomegalic inclusion manifestations of the syndrome include the 'gay disease (CID) is usually associated with the con- bowel syndrome9 and Kaposi's sarcoma. -
Software for Taxon-Aware Analysis of Clustered Protein Sequences
G3: Genes|Genomes|Genetics Early Online, published on September 2, 2017 as doi:10.1534/g3.117.300233 INVESTIGATIONS KinFin: Software for taxon-aware analysis of clustered protein sequences Dominik R. Laetsch∗,†,1 and Mark L. Blaxter∗ ∗Institute of Evolutionary Biology, University of Edinburgh, Edinburgh EH9 3JT UK, †The James Hutton Institute, Errol Road, Dundee DD2 5DA UK ABSTRACT The field of comparative genomics is concerned with the study of similarities and differences KEYWORDS between the information encoded in the genomes of organisms. A common approach is to define gene bioinformatics families by clustering protein sequences based on sequence similarity, and analyse protein cluster presence protein orthology and absence in different species groups as a guide to biology. Due to the high dimensionality of these data, protein family downstream analysis of protein clusters inferred from large numbers of species, or species with many genes, evolution is non-trivial, and few solutions exist for transparent, reproducible and customisable analyses. We present comparative KinFin, a streamlined software solution capable of integrating data from common file formats and delivering genomics aggregative annotation of protein clusters. KinFin delivers analyses based on systematic taxonomy of the filarial nema- species analysed, or on user-defined groupings of taxa, for example sets based on attributes such as life todes history traits, organismal phenotypes, or competing phylogenetic hypotheses. Results are reported through graphical and detailed text output files. We illustrate the utility of the KinFin pipeline by addressing questions regarding the biology of filarial nematodes, which include parasites of veterinary and medical importance. We resolve the phylogenetic relationships between the species and explore functional annotation of proteins in clusters in key lineages and between custom taxon sets, identifying gene families of interest. -
Co-Infection with Onchocerca Volvulus and Loa Loa Microfilariae in Central Cameroon: Are These Two Species Interacting?
843 Co-infection with Onchocerca volvulus and Loa loa microfilariae in central Cameroon: are these two species interacting? S. D. S. PION1,2*, P. CLARKE3, J. A. N. FILIPE2,J.KAMGNO1,J.GARDON1,4, M.-G. BASA´ N˜ EZ2 and M. BOUSSINESQ1,5 1 Laboratoire mixte IRD (Institut de Recherche pour le De´veloppement) – CPC (Centre Pasteur du Cameroun) d’Epide´miologie et de Sante´ publique, Centre Pasteur du Cameroun, BP 1274, Yaounde´, Cameroun 2 Department of Infectious Disease Epidemiology, St Mary’s campus, Norfolk Place, London W2 1PG, UK 3 Infectious Disease Epidemiology Unit London School of Hygiene and Tropical Medicine Keppel Street, London WC1E 7HT, UK 4 Institut de Recherche pour le De´veloppement, UR 24 Epide´miologie et Pre´vention, CP 9214 Obrajes, La Paz, Bolivia 5 Institut de Recherche pour le De´veloppement, De´partement Socie´te´s et Sante´, 213 rue La Fayette, 75480 Paris Cedex 10, France (Received 16 August 2005; revised 3 October; revised 9 December 2005; accepted 9 December 2005; first published online 10 February 2006) SUMMARY Ivermectin treatment may induce severe adverse reactions in some individuals heavily infected with Loa loa. This hampers the implementation of mass ivermectin treatment against onchocerciasis in areas where Onchocerca volvulus and L. loa are co-endemic. In order to identify factors, including co-infections, which may explain the presence of high L. loa micro- filaraemia in some individuals, we analysed data collected in 19 villages of central Cameroon. Two standardized skin snips and 30 ml of blood were obtained from each of 3190 participants and the microfilarial (mf) loads of both O. -
Cytotaxonomy, Morphology and Molecular Systematics of the Bioko Form of Simulium Yahense (Diptera: Simuliidae)
Bulletin of Entomological Research (2003) 93, 145–157 DOI: 10.1079/BER2003228 Cytotaxonomy, morphology and molecular systematics of the Bioko form of Simulium yahense (Diptera: Simuliidae) R.J. Post1*, P.K. Flook2, A.L. Millest3, R.A. Cheke4, P.J. McCall2, M.D. Wilson5, M. Mustapha1, S. Somiari6, J.B. Davies2, R.A. Mank7, P. Geenen7, P. Enyong8, A. Sima9 and J. Mas10 1Department of Entomology, The Natural History Museum, Cromwell Road, London, SW7 5BD, UK: 2Division of Parasite and Vector Biology, Liverpool School of Tropical Medicine, UK: 3Department of Biological Sciences, University of Salford, UK: 4Natural Resources Institute, University of Greenwich, Chatham, UK: 5Noguchi Memorial Institute for Medical Research, University of Ghana, Ghana: 6Windber Research Institute, Windber, USA: 7Animal Taxonomy Section, Wageningen University, The Netherlands: 8Medical Research Station, Kumba, Cameroon: 9Onchocerciasis Control Programme, Ministry of Health, Malabo, Equatorial Guinea: 10Onchocerciasis Control Programme, Spanish International Cooperation Agency, Malabo, Equatorial Guinea Abstract Cytotaxonomic analysis of the polytene chromosomes from larvae of the Simulium damnosum Theobald complex from the island of Bioko in Equatorial Guinea is reported, and a new endemic cytoform is described. Chromosomally this cytoform is close to both S. squamosum (Enderlein) and S. yahense Vajime & Dunbar, but is not identical to either. However, it is morphologically and enzymatically identical to S. yahense. The Bioko form was also found to differ from other cytoforms of the S. damnosum complex in West Africa in the copy number or RFLP pattern of several different repetitive DNA sequences. It is clear that the Bioko form is genetically distinct from other populations of the S. -
Mandrillus Leucophaeus Poensis)
Ecology and Behavior of the Bioko Island Drill (Mandrillus leucophaeus poensis) A Thesis Submitted to the Faculty of Drexel University by Jacob Robert Owens in partial fulfillment of the requirements for the degree of Doctor of Philosophy December 2013 i © Copyright 2013 Jacob Robert Owens. All Rights Reserved ii Dedications To my wife, Jen. iii Acknowledgments The research presented herein was made possible by the financial support provided by Primate Conservation Inc., ExxonMobil Foundation, Mobil Equatorial Guinea, Inc., Margo Marsh Biodiversity Fund, and the Los Angeles Zoo. I would also like to express my gratitude to Dr. Teck-Kah Lim and the Drexel University Office of Graduate Studies for the Dissertation Fellowship and the invaluable time it provided me during the writing process. I thank the Government of Equatorial Guinea, the Ministry of Fisheries and the Environment, Ministry of Information, Press, and Radio, and the Ministry of Culture and Tourism for the opportunity to work and live in one of the most beautiful and unique places in the world. I am grateful to the faculty and staff of the National University of Equatorial Guinea who helped me navigate the geographic and bureaucratic landscape of Bioko Island. I would especially like to thank Jose Manuel Esara Echube, Claudio Posa Bohome, Maximilliano Fero Meñe, Eusebio Ondo Nguema, and Mariano Obama Bibang. The journey to my Ph.D. has been considerably more taxing than I expected, and I would not have been able to complete it without the assistance of an expansive list of people. I would like to thank all of you who have helped me through this process, many of whom I lack the space to do so specifically here. -
Herpetic Viral Retinitis
American Journal of Virology 2 (1): 25-35, 2013 ISSN: 1949-0097 ©2013 Science Publication doi:10.3844/ajvsp.2013.25.35 Published Online 2 (1) 2013 (http://www.thescipub.com/ajv.toc) Herpetic Viral Retinitis Hidetaka Noma Department of Ophthalmology, Yachiyo Medical Center, Tokyo Women’s Medical University, Chiba, Japan Received 2012-05-30, Revised 2012-07-09; Accepted 2013-07-22 ABSTRACT Human Herpes Virus (HHV) is a DNA virus and is the most important viral pathogen causing intraocular inflammation. HHV is classified into types 1-8. Among these types, HHV-1, HHV-2, HHV-3 Varicella Zoster Virus (VZV) and HHV-5 Cytomegalovirus (CMV) are known to cause herpetic viral retinitis, including acute retinal necrosis and CMV retinitis. Herpes viral retinitis can be diagnosed from characteristic ocular findings and viral identification by PCR of the aqueous humor. Recently, therapy has become more effective than in the past. Herpes viral retinitis gradually progresses if appropriate treatment is not provided with regard to the patient’s immune status. Further advances in diagnostic methods and treatment are required in the future. Keywords: Human Herpes Virus (HHV), Varicella Zoster Virus (VZV), Acute Retinal Necrosis, Polymerase Chain Reaction (PCR), CMV Retinitis, Pathogen Causing Intraocular Inflammation 1. INTRODUCTION by Young and Bird (1978). In the 1980s, the etiology of the disease was shown to be infection by HSV and Human Herpes Virus (HHV) is a DNA virus and VSV. Widespread adoption of the Polymerase Chain the most important viral pathogen causing intraocular Reaction (PCR) method from early the 1990 made it inflammation. It is classified into types 1-8, among possible to easily detect the presence of intraocular which HHV-1, HHV-2, HHV-3 (Varicella Zoster viruses, after which many cases of ARN were Virus: VZV) and HHV-5 Cytomegalovirus (CMV) are diagnosed. -
Herpetic Corneal Infections
FocalPoints Clinical Modules for Ophthalmologists VOLUME XXVI, NUMBER 8 SEPTEMBER 2008 (MODULE 2 OF 3) Herpetic Corneal Infections Sonal S. Tuli, MD Reviewers and Contributing Editors Consultants George A. Stern, MD, Editor for Cornea & External Disease James Chodosh, MD, MPH Kristin M. Hammersmith, MD, Basic and Clinical Science Course Faculty, Section 8 Kirk R. Wilhelmus, MD, PhD Christie Morse, MD, Practicing Ophthalmologists Advisory Committee for Education Focal Points Editorial Review Board George A. Stern, MD, Missoula, MT Claiming CME Credit Editor in Chief, Cornea & External Disease Thomas L. Beardsley, MD, Asheville, NC Academy members: To claim Focal Points CME cred- Cataract its, visit the Academy web site and access CME Central (http://www.aao.org/education/cme) to view and print William S. Clifford, MD, Garden City, KS Glaucoma Surgery; Liaison for Practicing Ophthalmologists Advisory your Academy transcript and report CME credit you Committee for Education have earned. You can claim up to two AMA PRA Cate- gory 1 Credits™ per module. This will give you a maxi- Bradley S. Foster, MD, Springfield, MA Retina & Vitreous mum of 24 credits for the 2008 subscription year. CME credit may be claimed for up to three (3) years from Anil D. Patel, MD, Oklahoma City, OK date of issue. Non-Academy members: For assistance Neuro-Ophthalmology please send an e-mail to [email protected] or a Eric P. Purdy, MD, Fort Wayne, IN fax to (415) 561-8575. Oculoplastic, Lacrimal, & Orbital Surgery Steven I. Rosenfeld, MD, FACS, Delray Beach, FL Refractive Surgery, Optics & Refraction C. Gail Summers, MD, Minneapolis, MN Focal Points (ISSN 0891-8260) is published quarterly by the American Academy of Ophthalmology at 655 Beach St., San Francisco, CA 94109-1336. -
PEA's NEWSLETTER July Welcome to PEA's Very First Newsletter, Prisms
Issue 1 | Volume 1 | July 2019 Pacific Eye Associates www.pacificeye.com Prisms415.923.3007 PEA'S NEWSLETTER July Welcome to PEA's very first newsletter, Prisms. In our quarterly newsletter we'll deliver updates about our office, doctors, and eye treatments, as well as create a community of like- minded professionals. We'll keep each of our newsletters to a five minute read. Time is precious and so are your eyes, no dry eyes on our account! We count on doctors to make our newsletters better each time. Please email us with topics about which you would like to read. In this quarter's newsletter: - Dr. Oxford writes about our newest dry eye treatment, LipiFlow. - Dr. Heiden awarded the Outstanding Humanitarian Service Award. Dr. David Heiden received the 2018 Outstanding Humanitarian Service Award from the American Academy of Ophthalmology. He was nominated by Pacific Vision Foundation and Seva Foundation. Out of 32,000 members, only two physicians were selected for this honor. Dr. Heiden received the award in recogni- tion of his work to bring state- of- the- art blindness prevention techniques to HIV/ AIDS patients in politically unstable and poverty- stricken environments across the globe. He pioneered the practice of training primary care AIDS doctors how to use eye exams to diagnose and treat Cytomegalovirus (CM V) retinitis, a disease that can increase AIDS- related mortality and lead to sudden, irreversible blindness. He also trained AIDS doctors how to perform intraocular injection of medication to treat CM V retinitis, something that had never been considered before. CM V retinitis is a complication of AIDS and now almost forgotten in the David Heiden, M .D. -
Comparative Genomics of the Major Parasitic Worms
Comparative genomics of the major parasitic worms International Helminth Genomes Consortium Supplementary Information Introduction ............................................................................................................................... 4 Contributions from Consortium members ..................................................................................... 5 Methods .................................................................................................................................... 6 1 Sample collection and preparation ................................................................................................................. 6 2.1 Data production, Wellcome Trust Sanger Institute (WTSI) ........................................................................ 12 DNA template preparation and sequencing................................................................................................. 12 Genome assembly ........................................................................................................................................ 13 Assembly QC ................................................................................................................................................. 14 Gene prediction ............................................................................................................................................ 15 Contamination screening ............................................................................................................................ -
Extracellular Onchocerca-Derived Small Rnas in Host Nodules
Edinburgh Research Explorer Extracellular Onchocerca -derived small RNAs in host nodules and blood Citation for published version: Quintana, JF, Makepeace, BL, Babayan, SA, Ivens, A, Pfarr, KM, Blaxter, M, Debrah, A, Wanji, S, Ngangyung, HF, Bah, GS, Tanya, VN, Taylor, DW, Hoerauf, A & Buck, AH 2015, 'Extracellular Onchocerca -derived small RNAs in host nodules and blood', Parasites and Vectors, vol. 8, no. 1, 58. https://doi.org/10.1186/s13071-015-0656-1 Digital Object Identifier (DOI): 10.1186/s13071-015-0656-1 Link: Link to publication record in Edinburgh Research Explorer Document Version: Publisher's PDF, also known as Version of record Published In: Parasites and Vectors Publisher Rights Statement: © 2015 Quintana et al.; licensee BioMed Central. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. General rights Copyright for the publications made accessible via the Edinburgh Research Explorer is retained by the author(s) and / or other copyright owners and it is a condition of accessing these publications that users recognise and abide by the legal requirements associated with these rights. Take down policy The University of Edinburgh has made every reasonable effort to ensure that Edinburgh Research Explorer content complies with UK legislation. If you believe that the public display of this file breaches copyright please contact [email protected] providing details, and we will remove access to the work immediately and investigate your claim. -
Second Case of Zoonotic Onchocerca Infection in a Resident of Oita in Japan
Article available at http://www.parasite-journal.org or http://dx.doi.org/10.1051/parasite/1996032179 S e c o n d c a s e o f z o o n o t ic O n c h o c e r c a in f e c t io n IN A RESIDENT OF OlTA IN JAPAN TAKAOKA H.*, BAIN O.**, TAJIMI S.***, KASHIMA K.****, NAKAYAMA I.****, KORENAGA M.*****, AOKI C.* & OTSUKA Y.* Summary : Résumé : D euxièm e cas d ’infection d ’un habitant d ’O ïta , au A non-gravid female Onchocerca was found in histopathological J apon, par une onchocerque animale sections of a biopsy specimen taken from a painful nodule in the A Oïta, au sud du Japon, une femme consulte pour un nodule wrist of a 57-year-old woman in Oita, in southern Japan. Six sous-cutané douloureux au poignet accompagné d'une paralysie species of Onchocerca have been found in animals in Japan: two récente de la main. Une onchocerque femelle, non gravide, est in wild bovids, one in equids, and three in domestic bovids of trouvée sur les coupes histologiques de la biopsie. which one, Onchocerca sp., is only known by the microfilaria and Six espèces d'onchocerques sont signalées au Japon: deux chez infective stage. Distinctive morphological features of the worm, un bovidé sauvage en montagne, une chez les chevaux, trois including a three-layered thick cuticle with prominent annular chez les bovins domestiques dont une, Onchocerca sp., connue ridges at wide intervals, high somatic muscles and narrow lateral seulement par la microfilaire et le stade infectant.