Application of Clojure Language to Build Multitasking Simulation Tool
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Sun Glassfish Enterprise Server V3 Scripting Framework Guide
Sun GlassFish Enterprise Server v3 Scripting Framework Guide Sun Microsystems, Inc. 4150 Network Circle Santa Clara, CA 95054 U.S.A. Part No: 820–7697–11 December 2009 Copyright 2009 Sun Microsystems, Inc. 4150 Network Circle, Santa Clara, CA 95054 U.S.A. All rights reserved. Sun Microsystems, Inc. has intellectual property rights relating to technology embodied in the product that is described in this document. In particular, and without limitation, these intellectual property rights may include one or more U.S. patents or pending patent applications in the U.S. and in other countries. U.S. Government Rights – Commercial software. Government users are subject to the Sun Microsystems, Inc. standard license agreement and applicable provisions of the FAR and its supplements. This distribution may include materials developed by third parties. Parts of the product may be derived from Berkeley BSD systems, licensed from the University of California. UNIX is a registered trademark in the U.S. and other countries, exclusively licensed through X/Open Company, Ltd. Sun, Sun Microsystems, the Sun logo, the Solaris logo, the Java Coffee Cup logo, docs.sun.com, Enterprise JavaBeans, EJB, GlassFish, J2EE, J2SE, Java Naming and Directory Interface, JavaBeans, Javadoc, JDBC, JDK, JavaScript, JavaServer, JavaServer Pages, JMX, JRE, JSP,JVM, MySQL, NetBeans, OpenSolaris, SunSolve, Sun GlassFish, ZFS, Java, and Solaris are trademarks or registered trademarks of Sun Microsystems, Inc. or its subsidiaries in the U.S. and other countries. All SPARC trademarks are used under license and are trademarks or registered trademarks of SPARC International, Inc. in the U.S. and other countries. -
The Machine That Builds Itself: How the Strengths of Lisp Family
Khomtchouk et al. OPINION NOTE The Machine that Builds Itself: How the Strengths of Lisp Family Languages Facilitate Building Complex and Flexible Bioinformatic Models Bohdan B. Khomtchouk1*, Edmund Weitz2 and Claes Wahlestedt1 *Correspondence: [email protected] Abstract 1Center for Therapeutic Innovation and Department of We address the need for expanding the presence of the Lisp family of Psychiatry and Behavioral programming languages in bioinformatics and computational biology research. Sciences, University of Miami Languages of this family, like Common Lisp, Scheme, or Clojure, facilitate the Miller School of Medicine, 1120 NW 14th ST, Miami, FL, USA creation of powerful and flexible software models that are required for complex 33136 and rapidly evolving domains like biology. We will point out several important key Full list of author information is features that distinguish languages of the Lisp family from other programming available at the end of the article languages and we will explain how these features can aid researchers in becoming more productive and creating better code. We will also show how these features make these languages ideal tools for artificial intelligence and machine learning applications. We will specifically stress the advantages of domain-specific languages (DSL): languages which are specialized to a particular area and thus not only facilitate easier research problem formulation, but also aid in the establishment of standards and best programming practices as applied to the specific research field at hand. DSLs are particularly easy to build in Common Lisp, the most comprehensive Lisp dialect, which is commonly referred to as the “programmable programming language.” We are convinced that Lisp grants programmers unprecedented power to build increasingly sophisticated artificial intelligence systems that may ultimately transform machine learning and AI research in bioinformatics and computational biology. -
(Cont'd) Current Trends
Scripting vs Systems Programming Languages (cont’d) Designed for gluing Designed for building Does application implement complex algorithms and data applications : flexibility applications : efficiency structures? Does application process large data sets (>10,000 items)? Interpreted Compiled Are application functions well-defined, fixed? Dynamic variable creation Variable declaration If yes, consider a system programming language. Data and code integrated : Data and code separated : meta-programming cannot create/run code on Is the main task to connect components, legacy apps? supported the fly Does the application manipulate a variety of things? Does the application have a GUI? Dynamic typing (typeless) Static typing Are the application's functions evolving rapidly? Examples: PERL, Tcl, Examples: PL/1, Ada, Must the application be extensible? Python, Ruby, Scheme, Java, C/C++, C#, etc Does the application do a lot of string manipulation? Visual Basic, etc If yes, consider a scripting language. cs480 (Prasad) LSysVsScipt 1 cs480 (Prasad) LSysVsScipt 2 Current Trends Jython (for convenient access to Java APIs) Hybrid Languages : Scripting + Systems Programming I:\tkprasad\cs480>jython – Recent JVM-based Scripting Languages Jython 2.1 on java1.4.1_02 (JIT: null) Type "copyright", "credits" or "license" for more information. »Jython : Python dialect >>> import javax.swing as swing >>> win = swing.JFrame("Welcome to Jython") »Clojure : LISP dialect >>> win.size = (200, 200) »Scala : OOP +Functional Hybrid >>> win.show() -
An Evaluation of Go and Clojure
An evaluation of Go and Clojure A thesis submitted in partial satisfaction of the requirements for the degree Bachelors of Science in Computer Science Fall 2010 Robert Stimpfling Department of Computer Science University of Colorado, Boulder Advisor: Kenneth M. Anderson, PhD Department of Computer Science University of Colorado, Boulder 1. Introduction Concurrent programming languages are not new, but they have been getting a lot of attention more recently due to their potential with multiple processors. Processors have gone from growing exponentially in terms of speed, to growing in terms of quantity. This means processes that are completely serial in execution will soon be seeing a plateau in performance gains since they can only rely on one processor. A popular approach to using these extra processors is to make programs multi-threaded. The threads can execute in parallel and use shared memory to speed up execution times. These multithreaded processes can significantly speed up performance, as long as the number of dependencies remains low. Amdahl‘s law states that these performance gains can only be relative to the amount of processing that can be parallelized [1]. However, the performance gains are significant enough to be looked into. These gains not only come from the processing being divvied up into sections that run in parallel, but from the inherent gains from sharing memory and data structures. Passing new threads a copy of a data structure can be demanding on the processor because it requires the processor to delve into memory and make an exact copy in a new location in memory. Indeed some studies have shown that the problem with optimizing concurrent threads is not in utilizing the processors optimally, but in the need for technical improvements in memory performance [2]. -
Amazon Codeguru Profiler
Amazon CodeGuru Profiler User Guide Amazon CodeGuru Profiler User Guide Amazon CodeGuru Profiler: User Guide Copyright © Amazon Web Services, Inc. and/or its affiliates. All rights reserved. Amazon's trademarks and trade dress may not be used in connection with any product or service that is not Amazon's, in any manner that is likely to cause confusion among customers, or in any manner that disparages or discredits Amazon. All other trademarks not owned by Amazon are the property of their respective owners, who may or may not be affiliated with, connected to, or sponsored by Amazon. Amazon CodeGuru Profiler User Guide Table of Contents What is Amazon CodeGuru Profiler? ..................................................................................................... 1 What can I do with CodeGuru Profiler? ......................................................................................... 1 What languages are supported by CodeGuru Profiler? ..................................................................... 1 How do I get started with CodeGuru Profiler? ................................................................................ 1 Setting up ......................................................................................................................................... 3 Set up in the Lambda console ..................................................................................................... 3 Step 1: Sign up for AWS .................................................................................................... -
Clojure, Given the Pun on Closure, Representing Anything Specific
dynamic, functional programming for the JVM “It (the logo) was designed by my brother, Tom Hickey. “It I wanted to involve c (c#), l (lisp) and j (java). I don't think we ever really discussed the colors Once I came up with Clojure, given the pun on closure, representing anything specific. I always vaguely the available domains and vast emptiness of the thought of them as earth and sky.” - Rich Hickey googlespace, it was an easy decision..” - Rich Hickey Mark Volkmann [email protected] Functional Programming (FP) In the spirit of saying OO is is ... encapsulation, inheritance and polymorphism ... • Pure Functions • produce results that only depend on inputs, not any global state • do not have side effects such as Real applications need some changing global state, file I/O or database updates side effects, but they should be clearly identified and isolated. • First Class Functions • can be held in variables • can be passed to and returned from other functions • Higher Order Functions • functions that do one or both of these: • accept other functions as arguments and execute them zero or more times • return another function 2 ... FP is ... Closures • main use is to pass • special functions that retain access to variables a block of code that were in their scope when the closure was created to a function • Partial Application • ability to create new functions from existing ones that take fewer arguments • Currying • transforming a function of n arguments into a chain of n one argument functions • Continuations ability to save execution state and return to it later think browser • back button 3 .. -
Proceedings of the 8Th European Lisp Symposium Goldsmiths, University of London, April 20-21, 2015 Julian Padget (Ed.) Sponsors
Proceedings of the 8th European Lisp Symposium Goldsmiths, University of London, April 20-21, 2015 Julian Padget (ed.) Sponsors We gratefully acknowledge the support given to the 8th European Lisp Symposium by the following sponsors: WWWLISPWORKSCOM i Organization Programme Committee Julian Padget – University of Bath, UK (chair) Giuseppe Attardi — University of Pisa, Italy Sacha Chua — Toronto, Canada Stephen Eglen — University of Cambridge, UK Marc Feeley — University of Montreal, Canada Matthew Flatt — University of Utah, USA Rainer Joswig — Hamburg, Germany Nick Levine — RavenPack, Spain Henry Lieberman — MIT, USA Christian Queinnec — University Pierre et Marie Curie, Paris 6, France Robert Strandh — University of Bordeaux, France Edmund Weitz — University of Applied Sciences, Hamburg, Germany Local Organization Christophe Rhodes – Goldsmiths, University of London, UK (chair) Richard Lewis – Goldsmiths, University of London, UK Shivi Hotwani – Goldsmiths, University of London, UK Didier Verna – EPITA Research and Development Laboratory, France ii Contents Acknowledgments i Messages from the chairs v Invited contributions Quicklisp: On Beyond Beta 2 Zach Beane µKanren: Running the Little Things Backwards 3 Bodil Stokke Escaping the Heap 4 Ahmon Dancy Unwanted Memory Retention 5 Martin Cracauer Peer-reviewed papers Efficient Applicative Programming Environments for Computer Vision Applications 7 Benjamin Seppke and Leonie Dreschler-Fischer Keyboard? How quaint. Visual Dataflow Implemented in Lisp 15 Donald Fisk P2R: Implementation of -
Characteristics of Dynamic JVM Languages
Characteristics of Dynamic JVM Languages Aibek Sarimbekov Andrej Podzimek Lubomir Bulej University of Lugano Charles University in Prague University of Lugano fi[email protected] [email protected]ff.cuni.cz fi[email protected] Yudi Zheng Nathan Ricci Walter Binder University of Lugano Tufts University University of Lugano fi[email protected] [email protected] fi[email protected] Abstract However, since the JVM was originally conceived for The Java Virtual Machine (JVM) has become an execution a statically-typed language, the performance of the JVM platform targeted by many programming languages. How- and its JIT compiler with dynamically-typed languages is ever, unlike with Java, a statically-typed language, the per- often lacking, lagging behind purpose-built language-specific formance of the JVM and its Just-In-Time (JIT) compiler JIT compilers. Making the JVM perform well with various with dynamically-typed languages lags behind purpose-built statically- and dynamically-typed languages clearly requires language-specific JIT compilers. In this paper, we aim to significant effort, not only in optimizing the JVM itself, but contribute to the understanding of the workloads imposed on also, more importantly, in optimizing the bytecode-emitting the JVM by dynamic languages. We use various metrics to language compiler, instead of just relying on the original JIT characterize the dynamic behavior of a variety of programs to gain performance [8]. This in turn requires that developers written in three dynamic languages (Clojure, Python, and of both the language compilers and the JVM understand the Ruby) executing on the JVM. We identify the differences characteristics of the JVM workloads produced by various with respect to Java, and briefly discuss their implications. -
Debian Java Insights and Challenges
Debian Java Insights and challenges Markus Koschany FOSDEM 19 Brussels / Belgium February, 3rd 2019 Markus Koschany Debian Java: Insights and challenges FOSDEM 19 1/7 The importance of Java Source / binary packages maintained by the Java team: 1033 / 1644 (+10,84 % since Debian 9) Source lines of code (Rank 3) : 90,744,884 Popcon value OpenJDK-8 (installed): 78104 / 199604 Popular libraries: apache-commons-*, javamail, xerces2, bouncycastle Popular applications: libreoffice, netbeans, pdfsam, sweethome3d, freeplane, freecol Frequently used for scientific research, medical care and bioinformatics. Markus Koschany Debian Java: Insights and challenges FOSDEM 19 2/7 What is new in Buster? OpenJDK 11 transition completed. (required more than 400! package updates) Build tools: Ant and Maven are up-to-date. Gradle is stuck at the last pre-Kotlin version. SBT is still being worked on. JVM languages: Groovy 2.14, Scala 2.11.12 (2.12 requires SBT), Clojure 1.9, Jython 1.7.1, JRuby 9.1.13 (?), Kotlin is wanted but hard to bootstrap. IDE: Eclipse is gone (lack of maintainers) but there is Netbeans 10 now. Server: Jetty 9.4 and Tomcat 9 fully up-to-date with systemd integration. Reproducibility rate is at 85% (was 75%) https://reproducible-builds.org Markus Koschany Debian Java: Insights and challenges FOSDEM 19 3/7 Packaging challenges “None of the packages in the main archive area require software outside of that area to function” Internet downloads at build time are not allowed No prebuilt jar or class files! Java is version-centric. Every developer has to update every dependency themself in this model. -
Reading the Runes for Java Runtimes the Latest IBM Java Sdks
Java Technology Centre Reading the runes for Java runtimes The latest IBM Java SDKs ... and beyond Tim Ellison [email protected] © 2009 IBM Corporation Java Technology Centre Goals . IBM and Java . Explore the changing landscape of hardware and software influences . Discuss the impact to Java runtime technology due to these changes . Show how IBM is leading the way with these changes 2 Mar 9, 2009 © 2009 IBM Corporation Java Technology Centre IBM and Java . Java is critically important to IBM – Provides fundamental infrastructure to IBM software portfolio – Delivers standard development environment – Enables cost effective multi platform support – Delivered to Independent Software Vendors supporting IBM server platforms . IBM is investing strategically in virtual machine technology – Since Java 5.0, a single Java platform technology supports ME, SE and EE – Technology base on which to delivery improved performance, reliability and serviceability • Some IBM owned code (Virtual machine, JIT compiler, ...) • Some open source code (Apache XML parser, Apache Core libraries, Zlib, ...) • Some Sun licensed code (class libraries, tools, ...) . Looking to engender accelerated and open innovation in runtime technologies – Support for Eclipse, Apache (Harmony, XML, Derby, Geronimo, Tuscany) – Broad participation of relevant standards bodies such as JCP and OSGi 3 Mar 9, 2009 © 2009 IBM Corporation Java Technology Centre IBM Java – 2009 key initiatives . Consumability – Deliver value without complexity. – Ensure that problems with our products can be addressed quickly, allowing customers to keep focus on their own business issues. – Deliver a consistent model for solving customer problems. “Scaling Up” - Emerging hardware and applications – Provide a Java implementation that can scale to the most demanding application needs. -
Glassfish Server 3.0.1 Scripting Framework Guide
Oracle® GlassFish Server 3.0.1 Scripting Framework Guide Part No: 821–1760–10 June 2010 Copyright © 2010, Oracle and/or its affiliates. All rights reserved. This software and related documentation are provided under a license agreement containing restrictions on use and disclosure and are protected by intellectual property laws. Except as expressly permitted in your license agreement or allowed by law, you may not use, copy, reproduce, translate, broadcast, modify, license, transmit, distribute, exhibit, perform, publish, or display any part, in any form, or by any means. Reverse engineering, disassembly, or decompilation of this software, unless required by law for interoperability, is prohibited. The information contained herein is subject to change without notice and is not warranted to be error-free. If you find any errors, please report them to us in writing. If this is software or related software documentation that is delivered to the U.S. Government or anyone licensing it on behalf of the U.S. Government, the following notice is applicable: U.S. GOVERNMENT RIGHTS Programs, software, databases, and related documentation and technical data delivered to U.S. Government customers are “commercial computer software” or “commercial technical data” pursuant to the applicable Federal Acquisition Regulation and agency-specific supplemental regulations. As such, the use, duplication, disclosure, modification, and adaptation shall be subject to the restrictions and license terms setforth in the applicable Government contract, and, to the extent applicable by the terms of the Government contract, the additional rights set forth in FAR 52.227-19, Commercial Computer Software License (December 2007). Oracle America, Inc., 500 Oracle Parkway, Redwood City, CA 94065. -
Mixing R with Other Languages JOHN D
Mixing R with other languages JOHN D. COOK, PHD SINGULAR VALUE CONSULTING Why R? Libraries, libraries, libraries De facto standard for statistical research Nice language, as far as statistical languages go “Quirky, flawed, and an enormous success.” Why mix languages? Improve performance of R code Execution speed (e.g. loops) Memory management Raid R’s libraries How to optimize R Vectorize Rewrite not using R A few R quirks Everything is a vector Everything can be null or NA Unit-offset vectors Zero index legal but strange Negative indices remove elements Matrices filled by column by default $ acts like dot, dot not special C package interface Must manage low-level details of R object model and memory Requires Rtools on Windows Lots of macros like REALSXP, PROTECT, and UNPROTECT Use C++ (Rcpp) instead “I do not recommend using C for writing new high-performance code. Instead write C++ with Rcpp.” – Hadley Wickham Rcpp The most widely used extension method for R Call C, C++, or Fortran from R Companion project RInside to call R from C++ Extensive support even for advanced C++ Create R packages or inline code http://rcpp.org Dirk Eddelbuettel’s book Simple Rcpp example library(Rcpp) cppFunction('int add(int x, int y, int z) { int sum = x + y + z; return sum; }') add(1, 2, 3) .NET RDCOM http://sunsite.univie.ac.at/rcom/ F# type provider for R http://bluemountaincapital.github.io/FSharpRProvider/ R.NET https://rdotnet.codeplex.com/ SQL Server 2016 execute sp_execute_external_script @language = N'R' , @script =