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WL | Delft Hydraulics Prepared for: WL | Delft Hydraulics Development of Delft3D-ECO Calibration for a tropical stratified reservoir Research Report December 2007 Z4524 WL | delft hydraulics Prepared for: WL | Delft Hydraulics Development of Delft3D-ECO Calibration for a tropical stratified reservoir Johannes Smits (WL | Delft Hydraulics) Research Report December 2007 Development of Delft3D-ECO Z4524 December 2007 Calibration for a tropical stratified reservoir Contents 1 Introduction..........................................................................................................1 1.1 Background................................................................................................1 1.2 Objectives..................................................................................................1 1.3 Project organisation....................................................................................2 1.4 About this report ........................................................................................2 2 Description of ECO ..............................................................................................3 2.1 The structure..............................................................................................3 2.2 Processes and formulations ........................................................................4 2.2.1 The phytoplankton module BLOOM..............................................4 2.2.2 The water and sediment quality module .........................................8 2.3 Process coefficients..................................................................................15 3 The Upper Peirce Reservoir ...............................................................................17 3.1 Reservoir and catchment ..........................................................................17 3.2 Observed water quality.............................................................................18 4 Methodology .......................................................................................................25 4.1 Starting points..........................................................................................25 4.2 The calibration.........................................................................................26 5 The Upper Peirce Reservoir water quality model..............................................29 5.1 Model input .............................................................................................29 5.1.1 Computational grid and bathymetry .............................................29 5.1.2 Flow fields, dispersion, inflows and outflows...............................30 5.1.3 Loads ..........................................................................................32 5.1.4 Initial conditions..........................................................................34 5.1.5 Meteorological forcing ................................................................36 5.2 Simulated and observed concentrations ....................................................37 5.2.1 The water column........................................................................38 5.2.2 The sediment ...............................................................................50 5.3 Nutrient mass balances.............................................................................56 6 Conclusions and discussion ................................................................................59 7 References...........................................................................................................63 WL | Delft Hydraulics i December 2007 Z4524 Development of Delft3D-ECO Calibration for a tropical stratified reservoir Appendices A Input parameters for water and sediment quality processes ............................ 65 B Input parameters for phytoplankton................................................................. 69 ii WL | Delft Hydraulics Development of Delft3D-ECO Z4524 December 2007 Calibration for a tropical stratified reservoir 1 Introduction 1.1 Background Delft3D-ECO is a specific configuration of substances and processes selected from the process library of the DELWAQ water quality modelling framework for eutrophication studies. In 2000 Delft Hydraulics started a R&D programme for the improvement of sediment-water interaction modelling and process formulation in ECO. The programme resulted in a far reaching redesign of key processes that allows for the explicit simulation of the composition of both water compartments and sediment layers. The number and thickness of the sediment layers can be determined by the user. The new model structure, indicated as DELWAQ-G, operates on the basis of a more generic set of process formulations. For each water compartment or sediment layer the local transient conditions determine if a process actually proceeds, and which kinetics and coefficients are applying. The dissolved oxygen concentration is an important ruling condition. Whereas mass transport in the water column is calculated in the core algorithm of DELWAQ, vertical mass transport in water and sediment is taken care of a dedicated set of process routines that are part of the process library. To allow more comprehensive sediment-water interaction modeling DELWAQ has been extended with a new microphytobenthos submodel, with a sediment consolidation and erosion submodel, and with processes for sulphate, dissolved and particulate sulphide and methane (Delft Hydraulics, 2004a and 2003a/b). A link has been established between microphytobenthos biomass, benthic grazing and sediment stability. DELWAQ-G was first implemented and calibrated on the basis of a research application for the Wadden Sea (Delft Hydraulics, 2006a). This application concerns the Generic Estuarine Ecological Model (GEM), the development of which started in 1995 on the initiative of Rijkswaterstaat RIKZ (Delft Hydraulics, 1997a). Since then GEM (e.g. ECO) has gradually been improved and extended to become a rather comprehensive modelling framework for eutrophication and primary production in estuaries and coastal waters (Delft Hydraulics, 2002 and 2003b). It has been used for various investigations concerning the eutrophication of the Dutch North Sea, the Wadden Sea and Lake Veere in the Scheldt Delta. 1.2 Objectives Delft3D-ECO as based on DELWAQ-G has been calibrated for a marine/estuarine system. The objectives of the present research are: x to calibrate ECO for a tropical fresh water system; x to obtain a more generic set of process coefficients for the water quality processes included in the model; x to evaluate the performance of ECO as based on DELWAQ-G; x to formulate recommendations for further development; and x to enhance insight in the development of water quality in tropical reservoirs. WL | Delft Hydraulics 1 December 2007 Z4524 Development of Delft3D-ECO Calibration for a tropical stratified reservoir In view of an ongoing consultancy project an appropriate case has been found in the Upper Peirce Reservoir (UPR), a tropical stratified reservoir located in Singapore. Hydrodynamic input, meteorological forcing and loads of relevant substances are available from the ongoing “Marina Reservoir” project (Delft Hydraulics, 2006a and 2007). 1.3 Project organisation The calibration of ECO for UPR has been performed by the following team. Jan van Beek compiled model input, carried out and processed the simulations, and improved the software code in co-operation with Johannes Smits. Hans Los provided input coefficients for phytoplankton, and advised with regard to the calibration of those parameters. Johannes Smits determined the input coefficients of water and sediment quality processes, performed the calibration and co-ordinated the project. 1.4 About this report ECO is briefly described in Chapter 2. Extensive descriptions of the process formulations are available in other reports. The process coefficients resulting from the calibration are included in the tables of Appendices A and B. Chapter 3 contains a concise description of Upper Peirce Reservoir and the available water quality data. Chapter 4 describes the starting points and the approach of the calibration of ECO for UPR. The results are presented in Chapter 5 with regard to predicted concentrations and the mass balances of the main nutrients, nitrogen and phosphorus. Chapter 6 discusses the conclusions, and provides recommendations for the further development of ECO. References are listed in Chapter 7. 2 WL | Delft Hydraulics Development of Delft3D-ECO Z4524 December 2007 Calibration for a tropical stratified reservoir 2 Description of ECO 2.1 The structure ECO is basically a eutrophication model. ECO simulates the concentrations of nutrients (N,P,Si), organic matter, dissolved oxygen, and a number of “auxiliary” substances, as well as the growth and species composition of phytoplankton in surface water. Figure 2.1 provides a schematic overview of the ecosystem components and interactions as described in the most comprehensive form of ECO. The arrows indicate conversion processes. Algae, being primary producers, take up nutrients from water to produce cell material, including ammonium, nitrate, phosphate and (in case of diatoms) silicate. The photosysthesis by algae, which requires light, leads to the production of oxygen (DO). Carbon dioxide which is also consumed and produced is not included in ECO, since this nutrient is hardly ever limiting algae growth. Figure 2.1: Schematic overview of the ecosystem components and interactions
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