A ÆMINIUM: a Permission Based Concurrent-By-Default
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Software Developement Tools Introduction to Software Building
Software Developement Tools Introduction to software building SED & friends Outline 1. an example 2. what is software building? 3. tools 4. about CMake SED & friends – Introduction to software building 2 1 an example SED & friends – Introduction to software building 3 - non-portability: works only on a Unix systems, with mpicc shortcut and MPI libraries and headers installed in standard directories - every build, we compile all files - 0 level: hit the following line: mpicc -Wall -o heat par heat par.c heat.c mat utils.c -lm - 0.1 level: write a script (bash, csh, Zsh, ...) • drawbacks: Example • we want to build the parallel program solving heat equation: SED & friends – Introduction to software building 4 - non-portability: works only on a Unix systems, with mpicc shortcut and MPI libraries and headers installed in standard directories - every build, we compile all files - 0.1 level: write a script (bash, csh, Zsh, ...) • drawbacks: Example • we want to build the parallel program solving heat equation: - 0 level: hit the following line: mpicc -Wall -o heat par heat par.c heat.c mat utils.c -lm SED & friends – Introduction to software building 4 - non-portability: works only on a Unix systems, with mpicc shortcut and MPI libraries and headers installed in standard directories - every build, we compile all files • drawbacks: Example • we want to build the parallel program solving heat equation: - 0 level: hit the following line: mpicc -Wall -o heat par heat par.c heat.c mat utils.c -lm - 0.1 level: write a script (bash, csh, Zsh, ...) SED -
Unix/Linux Command Reference
Unix/Linux Command Reference .com File Commands System Info ls – directory listing date – show the current date and time ls -al – formatted listing with hidden files cal – show this month's calendar cd dir - change directory to dir uptime – show current uptime cd – change to home w – display who is online pwd – show current directory whoami – who you are logged in as mkdir dir – create a directory dir finger user – display information about user rm file – delete file uname -a – show kernel information rm -r dir – delete directory dir cat /proc/cpuinfo – cpu information rm -f file – force remove file cat /proc/meminfo – memory information rm -rf dir – force remove directory dir * man command – show the manual for command cp file1 file2 – copy file1 to file2 df – show disk usage cp -r dir1 dir2 – copy dir1 to dir2; create dir2 if it du – show directory space usage doesn't exist free – show memory and swap usage mv file1 file2 – rename or move file1 to file2 whereis app – show possible locations of app if file2 is an existing directory, moves file1 into which app – show which app will be run by default directory file2 ln -s file link – create symbolic link link to file Compression touch file – create or update file tar cf file.tar files – create a tar named cat > file – places standard input into file file.tar containing files more file – output the contents of file tar xf file.tar – extract the files from file.tar head file – output the first 10 lines of file tar czf file.tar.gz files – create a tar with tail file – output the last 10 lines -
Dig, a DNS Query Tool for Windows and Replacement for Nslookup 2008-04-15 15:29
dig, a DNS query tool for Windows and replacement for nslookup 2008-04-15 15:29 Disclaimer dig (dig for Windows ) (dig is a powerful tool to investigate [digging into] the DNS system) Source of the binary is from ftp.isc.org Manual Page of dig, in the cryptic Unix style, for reference only. (1) Download: Windows 2000 or Windows XP or Windows Vista ( dig version 9.3.2) Create a folder c:\dig Download this dig-files.zip and save it to c:\dig Use winzip or equivalent to extract the files in dig-files.zip to c:\dig Note: If msvcr70.dll already exists in %systemroot%\system32\ , then you can delete c:\dig\msvcr70.dll Note: Included in dig-files.zip is a command line whois, version 4.7.11: The canonical site of the whois source code is http://ftp.debian.org/debian/pool/main/w/whois/ The whois.exe file inside dig-files.zip is compiled using cygwin c++ compiler. (2) Do a file integrity check (why ? Because some virus checkers destroy dll files) Click Start.. Run ... type CMD (a black screen pops up) cd c:\dig sha1 * You should see some SHA1 hashes (in here, SHA1 hash is used as an integrity check, similar to checksums). Compare your hashes with the following table. SHA1 v1.0 [GPLed] by Stephan T. Lavavej, http://stl.caltech.edu 6CA70A2B 11026203 EABD7D65 4ADEFE3D 6C933EDA cygwin1.dll 57487BAE AA0EB284 8557B7CA 54ED9183 EAFC73FA dig.exe 97DBD755 D67A5829 C138A470 8BE7A4F2 6ED0894C host.exe D22E4B89 56E1831F F0F9D076 20EC19BF 171F0C29 libbind9.dll 81588F0B E7D3C6B3 20EDC314 532D9F2D 0A105594 libdns.dll E0BD7187 BBC01003 ABFE7472 E64B68CD 1BDB6BAB libeay32.dll F445362E 728A9027 96EC6871 A79C6307 054974E4 libisc.dll B3255C0E 4808A703 F95C217A 91FFCD69 40E680C9 libisccfg.dll DFBDE4F9 E25FD49A 0846E97F D813D687 6DC94067 liblwres.dll 61B8F573 DB448AE6 351AE347 5C2E7C48 2D81533C msvcr70.dll BDA14B28 7987E168 F359F0C9 DD96866D 04AB189B resolv.conf 1112343A 319C3EEE E44BF261 AE196C96 289C70E2 sha1.exe 21D20035 2A5B64E2 69FEA407 4D78053F 3C7A2738 whois.exe If your hashes are the same as the above table, then your files pass the integrity check. -
Streamlining Integrated Infrastructure Implementation “Dig Once” Strategy Development Workshop June 9, 2016
Streamlining Integrated Infrastructure Implementation “Dig Once” Strategy Development Workshop June 9, 2016 Workshop Report February 2017 Sponsored By: Alliance for the Chesapeake Bay Local Government Advisory Committee (LGAC) Funding: National Fish & Wildlife Foundation (NFWF) Prepared By: Alliance for the Chesapeake Bay Hirschman Water & Environment, LLC 1. Workshop Overview and Focus The focus of this workshop was to explore better ways to integrate green infrastructure (GI) into other infrastructure projects, such as roads, school and park improvements, and other capital projects. The workshop was hosted by the Alliance for the Chesapeake Bay (ACB) in conjunction with the Local Government Advisory Committee to the Chesapeake Executive Council (LGAC), with funding from the National Fish & Wildlife Foundation (NFWF). Mary Gattis, Director of Local Government Programs for ACB, was the lead facilitator for the workshop. The workshop was held on June 9, 2016 at the Eisenhower Hotel in Gettysburg, Pennsylvania. The organizers targeted certain sector representatives for attendance in order to achieve the necessary cross-section of experiences and points of view. Figure 1 shows the breakdown of attendees by type of organization. A total of 58 individuals attended the 1-day workshop, 52 participants and six staff representatives. See Appendix A for a list of workshop participants. Prior to the workshop, the following problem statement and workshop goal Figure 1. Representation of 52 Workshop Attendees were sent to attendees as part of the agenda. This was done in order to maintain a clear focus for the workshop, as the topic of green infrastructure has many facets, each of which could fill the entire agenda for a one-day event. -
Unix/Linux Command Reference
Unix/Linux Command Reference .com File Commands System Info ls – directory listing date – show the current date and time ls -al – formatted listing with hidden files cal – show this month's calendar cd dir - change directory to dir uptime – show current uptime cd – change to home w – display who is online pwd – show current directory whoami – who you are logged in as mkdir dir – create a directory dir finger user – display information about user rm file – delete file uname -a – show kernel information rm -r dir – delete directory dir cat /proc/cpuinfo – cpu information rm -f file – force remove file cat /proc/meminfo – memory information rm -rf dir – force remove directory dir * man command – show the manual for command cp file1 file2 – copy file1 to file2 df – show disk usage cp -r dir1 dir2 – copy dir1 to dir2; create dir2 if it du – show directory space usage doesn't exist free – show memory and swap usage mv file1 file2 – rename or move file1 to file2 whereis app – show possible locations of app if file2 is an existing directory, moves file1 into which app – show which app will be run by default directory file2 ln -s file link – create symbolic link link to file Compression touch file – create or update file tar cf file.tar files – create a tar named cat > file – places standard input into file file.tar containing files more file – output the contents of file tar xf file.tar – extract the files from file.tar head file – output the first 10 lines of file tar czf file.tar.gz files – create a tar with tail file – output the last 10 lines -
Unix Tools 2
Unix Tools 2 Jeff Freymueller Outline § Variables as a collec9on of words § Making basic output and input § A sampler of unix tools: remote login, text processing, slicing and dicing § ssh (secure shell – use a remote computer!) § grep (“get regular expression”) § awk (a text processing language) § sed (“stream editor”) § tr (translator) § A smorgasbord of examples Variables as a collec9on of words § The shell treats variables as a collec9on of words § set files = ( file1 file2 file3 ) § This sets the variable files to have 3 “words” § If you want the whole variable, access it with $files § If you want just the second word, use $files[2] § The shell doesn’t count characters, only words Basic output: echo and cat § echo string § Writes a line to standard output containing the text string. This can be one or more words, and can include references to variables. § echo “Opening files” § echo “working on week $week” § echo –n “no carriage return at the end of this” § cat file § Sends the contents of a file to standard output Input, Output, Pipes § Output to file, vs. append to file. § > filename creates or overwrites the file filename § >> filename appends output to file filename § Take input from file, or from “inline input” § < filename take all input from file filename § <<STRING take input from the current file, using all lines un9l you get to the label STRING (see next slide for example) § Use a pipe § date | awk '{print $1}' Example of “inline input” gpsdisp << END • Many programs, especially Okmok2002-2010.disp Okmok2002-2010.vec older ones, interac9vely y prompt you to enter input Okmok2002-2010.gmtvec • You can automate (or self- y Okmok2002-2010.newdisp document) this by using << Okmok2002_mod.stacov • Standard input is set to the 5 contents of this file 5 Okmok2010.stacov between << END and END 5 • You can use any label, not 5 just “END”. -
Useful Commands in Linux and Other Tools for Quality Control
Useful commands in Linux and other tools for quality control Ignacio Aguilar INIA Uruguay 05-2018 Unix Basic Commands pwd show working directory ls list files in working directory ll as before but with more information mkdir d make a directory d cd d change to directory d Copy and moving commands To copy file cp /home/user/is . To copy file directory cp –r /home/folder . to move file aa into bb in folder test mv aa ./test/bb To delete rm yy delete the file yy rm –r xx delete the folder xx Redirections & pipe Redirection useful to read/write from file !! aa < bb program aa reads from file bb blupf90 < in aa > bb program aa write in file bb blupf90 < in > log Redirections & pipe “|” similar to redirection but instead to write to a file, passes content as input to other command tee copy standard input to standard output and save in a file echo copy stream to standard output Example: program blupf90 reads name of parameter file and writes output in terminal and in file log echo par.b90 | blupf90 | tee blup.log Other popular commands head file print first 10 lines list file page-by-page tail file print last 10 lines less file list file line-by-line or page-by-page wc –l file count lines grep text file find lines that contains text cat file1 fiel2 concatenate files sort sort file cut cuts specific columns join join lines of two files on specific columns paste paste lines of two file expand replace TAB with spaces uniq retain unique lines on a sorted file head / tail $ head pedigree.txt 1 0 0 2 0 0 3 0 0 4 0 0 5 0 0 6 0 0 7 0 0 8 0 0 9 0 0 10 -
Basic Plotting Codes in R
The Basics of R for Windows We will use the data set timetrial.repeated.dat to learn some basic code in R for Windows. Commands will be shown in a different font, e.g., read.table, after the command line prompt, shown here as >. After you open R, type your commands after the prompt in what is called the Console window. Do not type the prompt, just the command. R stores the variables you create in a working directory. From the File menu, you need to first change the working directory to the directory where your data are stored. 1. Reading in data files Download the data file from www.biostat.umn.edu/~lynn/correlated.html to your local disk directory, go to File -> Change Directory to select that directory, and then read the data in: > contact = read.table(file="timetrial.repeated.dat", header=T) Note: if the first row of the data file had data instead of variable names, you would need to use header=F in the read.table command. Now you have named the data set contact, which you can then see in R just by typing its name: > contact or you can look at, for example, just the first 10 rows of the data set: > contact[1:10,] time sex age shape trial subj 1 2.68 M 31 Box 1 1 2 4.14 M 31 Box 2 1 3 7.22 M 31 Box 3 1 4 8.00 M 31 Box 4 1 5 7.09 M 30 Box 1 2 6 8.55 M 30 Box 2 2 7 8.79 M 30 Box 3 2 8 9.68 M 30 Box 4 2 9 6.05 M 30 Box 1 3 10 6.25 M 30 Box 2 3 This data set has 6 variables, one each in a column, where sex and shape are character valued. -
CMSC 331 Midterm Exam, Fall 2010 a 5 30
1 40/ 2 30/ 3 45/ 331Midterm Exam 01 November 2010 4 30/ CMSC 331 Midterm Exam, Fall 2010 a 5 30/ 6 30/ 7 20/ Name: _________________________________ -------------- UMBC username:_____________________________ 225/ You will have seventy-five (75) minutes to complete this closed book/notes exam. Use the backs of these pages if you need more room for your answers. Describe any assumptions you make in solv- ing a problem. We reserve the right to assign partial credit, and to deduct points for answers that are needlessly wordy. 1. True/False [40] For each of the following questions, circle T (true) or F (false). T F 1.1 COBOL was designed as a programming language for scientific and engineering applica- tions. FALSE T F 1.2 The procedural programming paradigm treats procedures as first class objects. FALSE T F 1.3 The “Von Neumann” computer architecture is still used as the basis for most computers today. TRUE T F 1.4 One of the advantages of interpreted over compiled languages is that they tend to offer more run time debugging support. TRUE T F 1.5 Any finite language can be defined by a regular expression. TRUE T F 1.6 Attribute grammars can specify languages that can not be specified using a context free grammar. TRUE T F 1.7 A recursive descent parser can not directly use a grammar that has right recursive rules. FALSE T F 1.8 The lexical structure of complex programming languages like Java can not be defined using regular expressions. FALSE T F 1.9 A non-deterministic finite automaton for a regular language is generally easier to write than a deterministic one, but harder to apply to a string to see if it matches. -
PS TEXT EDIT Reference Manual Is Designed to Give You a Complete Is About Overview of TEDIT
Information Management Technology Library PS TEXT EDIT™ Reference Manual Abstract This manual describes PS TEXT EDIT, a multi-screen block mode text editor. It provides a complete overview of the product and instructions for using each command. Part Number 058059 Tandem Computers Incorporated Document History Edition Part Number Product Version OS Version Date First Edition 82550 A00 TEDIT B20 GUARDIAN 90 B20 October 1985 (Preliminary) Second Edition 82550 B00 TEDIT B30 GUARDIAN 90 B30 April 1986 Update 1 82242 TEDIT C00 GUARDIAN 90 C00 November 1987 Third Edition 058059 TEDIT C00 GUARDIAN 90 C00 July 1991 Note The second edition of this manual was reformatted in July 1991; no changes were made to the manual’s content at that time. New editions incorporate any updates issued since the previous edition. Copyright All rights reserved. No part of this document may be reproduced in any form, including photocopying or translation to another language, without the prior written consent of Tandem Computers Incorporated. Copyright 1991 Tandem Computers Incorporated. Contents What This Book Is About xvii Who Should Use This Book xvii How to Use This Book xvii Where to Go for More Information xix What’s New in This Update xx Section 1 Introduction to TEDIT What Is PS TEXT EDIT? 1-1 TEDIT Features 1-1 TEDIT Commands 1-2 Using TEDIT Commands 1-3 Terminals and TEDIT 1-3 Starting TEDIT 1-4 Section 2 TEDIT Topics Overview 2-1 Understanding Syntax 2-2 Note About the Examples in This Book 2-3 BALANCED-EXPRESSION 2-5 CHARACTER 2-9 058059 Tandem Computers -
Manipulating Files and Directories
MANIPULATING FILES AND DIRECTORIES At this point, we are ready for some real work! This chapter will introduce the following commands: z cp—Copy files and directories. z mv—Move/rename files and directories. z mkdir—Create directories. z rm—Remove files and directories. z ln—Create hard and symbolic links. These five commands are among the most frequently used Linux com- mands. They are used for manipulating both files and directories. Now, to be frank, some of the tasks performed by these commands are more easily done with a graphical file manager. With a file manager, we can drag and drop a file from one directory to another, cut and paste files, delete files, and so on. So why use these old command-line programs? www.it-ebooks.info The answer is power and flexibility. While it is easy to perform simple file manipulations with a graphical file manager, complicated tasks can be easier with the command-line programs. For example, how could we copy all the HTML files from one directory to another—but only those that do not exist in the destination directory or are newer than the versions in the destination directory? Pretty hard with a file manager. Pretty easy with the command line: cp -u *.html destination Wildcards Before we begin using our commands, we need to talk about the shell fea- ture that makes these commands so powerful. Because the shell uses file- names so much, it provides special characters to help you rapidly specify groups of filenames. These special characters are called wildcards. -
Linux Cheat Sheet
1 of 4 ########################################### # 1.1. File Commands. # Name: Bash CheatSheet # # # # A little overlook of the Bash basics # ls # lists your files # # ls -l # lists your files in 'long format' # Usage: A Helpful Guide # ls -a # lists all files, including hidden files # # ln -s <filename> <link> # creates symbolic link to file # Author: J. Le Coupanec # touch <filename> # creates or updates your file # Date: 2014/11/04 # cat > <filename> # places standard input into file # Edited: 2015/8/18 – Michael Stobb # more <filename> # shows the first part of a file (q to quit) ########################################### head <filename> # outputs the first 10 lines of file tail <filename> # outputs the last 10 lines of file (-f too) # 0. Shortcuts. emacs <filename> # lets you create and edit a file mv <filename1> <filename2> # moves a file cp <filename1> <filename2> # copies a file CTRL+A # move to beginning of line rm <filename> # removes a file CTRL+B # moves backward one character diff <filename1> <filename2> # compares files, and shows where differ CTRL+C # halts the current command wc <filename> # tells you how many lines, words there are CTRL+D # deletes one character backward or logs out of current session chmod -options <filename> # lets you change the permissions on files CTRL+E # moves to end of line gzip <filename> # compresses files CTRL+F # moves forward one character gunzip <filename> # uncompresses files compressed by gzip CTRL+G # aborts the current editing command and ring the terminal bell gzcat <filename> #