Chapter 21: Yersinia Enterocolitica Potential Food Safety Hazard
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The Enterobacteriaceae and Their Significance to the Food Industry
ILSI Europe Report Series THE ENTEROBACTERIACEAE AND THEIR SIGNIFICANCE TO THE FOOD INDUSTRY REPORT Commissioned by the ILSI Europe Emerging Microbiological Issues International Life Sciences Institute Task Force About ILSI / ILSI Europe Founded in 1978, the International Life Sciences Institute (ILSI) is a nonprofit, worldwide foundation that seeks to improve the well-being of the general public through the advancement of science. Its goal is to further the understanding of scientific issues relating to nutrition, food safety, toxicology, risk assessment, and the environment. ILSI is recognised around the world for the quality of the research it supports, the global conferences and workshops it sponsors, the educational projects it initiates, and the publications it produces. ILSI is affiliated with the World Health Organization (WHO) as a non-governmental organisation and has special consultative status with the Food and Agricultural Organization (FAO) of the United Nations. By bringing together scientists from academia, government, industry, and the public sector, ILSI fosters a balanced approach to solving health and environmental problems of common global concern. Headquartered in Washington, DC, ILSI accomplishes this work through its worldwide network of branches, the ILSI Health and Environmental Sciences Institute (HESI) and its Research Foundation. Branches currently operate within Argentina, Brazil, Europe, India, Japan, Korea, Mexico, North Africa & Gulf Region, North America, North Andean, South Africa, South Andean, Southeast Asia Region, as well as a Focal Point in China. ILSI Europe was established in 1986 to identify and evaluate scientific issues related to the above topics through symposia, workshops, expert groups, and resulting publications. The aim is to advance the understanding and resolution of scientific issues in these areas. -
Yersinia Enterocolitica
Yersinia enterocolitica 1. What is yersiniosis? - Yersiniosis is an infectious disease caused by a bacterium, Yersinia. In the United States, most human illness is caused by one species, Y. enterocolitica. Infection with Y. enterocolitica can cause a variety of symptoms depending on the age of the person infected. Infection occurs most often in young children. Common symptoms in children are fever, abdominal pain, and diarrhea, which is often bloody. Symptoms typically develop 4 to 7 days after exposure and may last 1 to 3 weeks or longer. In older children and adults, right- sided abdominal pain and fever may be the predominant symptoms, and may be confused with appendicitis. In a small proportion of cases, complications such as skin rash, joint pains or spread of the bacteria to the bloodstream can occur. 2. How do people get infected with Y. enterocolitica? - Infection is most often acquired by eating contaminated food, especially raw or undercooked pork products. The preparation of raw pork intestines (chitterlings) may be particularly risky. Infants can be infected if their caretakers handle raw chitterlings and then do not adequately clean their hands before handling the infant or the infant’s toys, bottles, or pacifiers. Drinking contaminated unpasteurized milk or untreated water can also transmit the infection. Occasionally Y. enterocolitica infection occurs after contact with infected animals. On rare occasions, it can be transmitted as a result of the bacterium passing from the stools or soiled fingers of one person to the mouth of another person. This may happen when basic hygiene and hand washing habits are inadequate. -
Yersiniosis** Non-Immediate Notification Epidemiology Program
YERSINIOSIS** NON-IMMEDIATE NOTIFICATION EPIDEMIOLOGY PROGRAM Event Name: YER Event Time Period: 1 year Clinical Description: N/A CDC Event Classification (N/A): N/A Massachusetts Event Classification (2015): Confirmed Positive culture of Yersinia enterocolitica or Yersinia pseudotuberculosis from throat swabs, mesenteric lymph nodes, peritoneal fluid, stool, and blood, OR Positive PCR result for Yersinia sp **If report is concerning a Yersinia pestis event, please refer to “Plague”. Y. pestis should not be entered as a YER** Test New or beyond Report Type Source Result Data Entry Type report period? Laboratory report Culture Clinical specimen Yersinia enterocolitica Yes New event OR CONFIRMED Yersinia No pseudotuberculosis Same event Select (no sub-type specified): Microorganism: PrId: Pt: xxx: Nom: Culture Select (sub-type specified): Microorganism: PrId: Pt: Islt: Nom: Bacterial subtyping Laboratory report Culture Stool Yersinia enterocolitica Yes New event OR CONFIRMED Yersinia No pseudotuberculosis Same event Select: Yersinia sp identified: Prld: Pt: Stl: Nom: Organism specific culture Laboratory report Culture Clinical specimen Yersinia enterocolitica Yes New event OR CONFIRMED Yersinia No pseudotuberculosis Same event Select: Yersinia sp identified: Prld : Pt : XXX : Nom : Organism specific culture Laboratory report PCR Clinical specimen Positive Yes New event CONFIRMED No Same event Select: Yersinia DNA XXX PCR MDPH Case Classification Manual Page 1 of 2 Yersiniosis Last modified: Jan 2017 Test New or beyond Report Type Source Result Data Entry Type report period? Laboratory report PCR Stool Detected Yes New event CONFIRMED No Same event Select: Y enterocol DNA: Stl: Ql: Non-probe: PCR Laboratory report PCR Stool Yersinia enterocolitica Yes New event CONFIRMED No Same event Select: GI path DNA+RNA: Pnl: Stl: Non-probe PCR We do not accept: Yersinia aldovae, Y. -
Evidence of Antimicrobial Resistance and Presence of Pathogenicity Genes in Yersinia Enterocolitica Isolate from Wild Boars
pathogens Article Evidence of Antimicrobial Resistance and Presence of Pathogenicity Genes in Yersinia enterocolitica Isolate from Wild Boars Paola Modesto 1,* , Chiara Grazia De Ciucis 1,*, Walter Vencia 1, Maria Concetta Pugliano 1, Walter Mignone 2, Enrica Berio 2, Chiara Masotti 3, Carlo Ercolini 3, Laura Serracca 3, Tiziana Andreoli 4, Monica Dellepiane 4, Daniela Adriano 5, Simona Zoppi 5 , Daniela Meloni 5 and Elisabetta Razzuoli 1,* 1 Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta, Piazza Borgo Pila 39/24, 16129 Genoa, Italy; [email protected] (W.V.); [email protected] (M.C.P.) 2 Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta, Via Nizza 4, 18100 Imperia, Italy; [email protected] (W.M.); [email protected] (E.B.) 3 Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta, Via degliStagnoni 96, 19100 La Spezia, Italy; [email protected] (C.M.); [email protected] (C.E.); [email protected] (L.S.) 4 Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta, Via Martiri 6, 17056 Savona, Italy; [email protected] (T.A.); [email protected] (M.D.) 5 Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta, Via Bologna 148, 10154 Turin, Italy; [email protected] (D.A.); [email protected] (S.Z.); [email protected] (D.M.) * Correspondence: [email protected] (P.M.); [email protected] (C.G.D.C.); [email protected] (E.R.); Tel.: +39-010-5422 (P.M.); Fax: +39-010-566654 (P.M.) Citation: Modesto, P.; De Ciucis, C.G.; Vencia, W.; Pugliano, M.C.; Abstract: Yersinia enterocolitica (Ye) is a very important zoonosis andwild boars play a pivotal role in Mignone, W.; Berio, E.; Masotti, C.; its transmission. -
Supplementary Information
doi: 10.1038/nature06269 SUPPLEMENTARY INFORMATION METAGENOMIC AND FUNCTIONAL ANALYSIS OF HINDGUT MICROBIOTA OF A WOOD FEEDING HIGHER TERMITE TABLE OF CONTENTS MATERIALS AND METHODS 2 • Glycoside hydrolase catalytic domains and carbohydrate binding modules used in searches that are not represented by Pfam HMMs 5 SUPPLEMENTARY TABLES • Table S1. Non-parametric diversity estimators 8 • Table S2. Estimates of gross community structure based on sequence composition binning, and conserved single copy gene phylogenies 8 • Table S3. Summary of numbers glycosyl hydrolases (GHs) and carbon-binding modules (CBMs) discovered in the P3 luminal microbiota 9 • Table S4. Summary of glycosyl hydrolases, their binning information, and activity screening results 13 • Table S5. Comparison of abundance of glycosyl hydrolases in different single organism genomes and metagenome datasets 17 • Table S6. Comparison of abundance of glycosyl hydrolases in different single organism genomes (continued) 20 • Table S7. Phylogenetic characterization of the termite gut metagenome sequence dataset, based on compositional phylogenetic analysis 23 • Table S8. Counts of genes classified to COGs corresponding to different hydrogenase families 24 • Table S9. Fe-only hydrogenases (COG4624, large subunit, C-terminal domain) identified in the P3 luminal microbiota. 25 • Table S10. Gene clusters overrepresented in termite P3 luminal microbiota versus soil, ocean and human gut metagenome datasets. 29 • Table S11. Operational taxonomic unit (OTU) representatives of 16S rRNA sequences obtained from the P3 luminal fluid of Nasutitermes spp. 30 SUPPLEMENTARY FIGURES • Fig. S1. Phylogenetic identification of termite host species 38 • Fig. S2. Accumulation curves of 16S rRNA genes obtained from the P3 luminal microbiota 39 • Fig. S3. Phylogenetic diversity of P3 luminal microbiota within the phylum Spirocheates 40 • Fig. -
Review Article Yersinia Enterocolitica: Mode of Transmission, Molecular Insights of Virulence, and Pathogenesis of Infection
SAGE-Hindawi Access to Research Journal of Pathogens Volume 2011, Article ID 429069, 10 pages doi:10.4061/2011/429069 Review Article Yersinia enterocolitica: Mode of Transmission, Molecular Insights of Virulence, and Pathogenesis of Infection Yeasmin Sabina,1 Atiqur Rahman,2 Ramesh Chandra Ray,3 and Didier Montet4 1 Department of Genetic Engineering and Biotechnology, University of Dhaka, Dhaka 1000, Bangladesh 2 Department of Microbiology, University of Dhaka, Dhaka 1000, Bangladesh 3 Central Tuber Crops Research Institute, Bhubaneswar, India 4 Centre International de Recherche en Agronomie pour le Developpement (CIRAD), Montpellier, France Correspondence should be addressed to Yeasmin Sabina, y [email protected] Received 19 April 2011; Revised 28 May 2011; Accepted 5 June 2011 Academic Editor: Latiful Bari Copyright © 2011 Yeasmin Sabina et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Although Yersinia enterocolitica is usually transmitted through contaminated food and untreated water, occasional transmission such as human-to-human, animal-to-human and blood transfusion associated transmission have also identified in human disease. Of the six Y. enterocolitica biotypes, the virulence of the pathogenic biotypes, namely, 1B and 2–5 is attributed to the presence of a highly conserved 70-kb virulence plasmid, termed pYV/pCD and certain chromosomal genes. Some biotype 1A strains, despite lacking virulence plasmid (pYV) and traditional chromosomal virulence genes, are isolated frequently from humans with gastrointestinal diseases similar to that produced by isolates belonging known pathogenic biotypes. Y. enterocolitica pathogenic biotypes have evolved two major properties: the ability to penetrate the intestinal wall, which is thought to be controlled by plasmid genes, and the production of heat-stable enterotoxin, which is controlled by chromosomal genes. -
Preventing Foodborne Illness: Yersiniosis1 Aswathy Sreedharan, Correy Jones, and Keith Schneider2
FSHN12-09 Preventing Foodborne Illness: Yersiniosis1 Aswathy Sreedharan, Correy Jones, and Keith Schneider2 What is yersiniosis? Yersiniosis is an infectious disease caused by the con- sumption of contaminated food contaminated with the bacterium Yersinia. Most foodborne infections in the US resulting from ingestion of Yersinia species are caused by Y. enterocolitica. Yersiniosis is characterized by common symptoms of gastroenteritis such as abdominal pain and mild fever (8). Most outbreaks are associated with improper food processing techniques, including poor sanitation and improper sterilization techniques by food handlers. The dis- ease is also spread by the fecal–oral route, i.e., an infected person contaminating surfaces and transmitting the disease to others by not washing his or her hands thoroughly after Figure 1. Yersinia enterocolitica bacteria growing on a Xylose Lysine going to the bathroom. The bacterium is prevalent in the Sodium Deoxycholate (XLD) agar plate. environment, enabling it to contaminate our water and Credits: CDC Public Health Image Library (ID# 6705). food systems. Outbreaks of yersiniosis have been associated with unpasteurized milk, oysters, and more commonly with What is Y. enterocolitica? consumption of undercooked dishes containing pork (8). Yersinia enterocolitica is a small, rod-shaped, Gram- Yersiniosis incidents have been documented more often negative, psychrotrophic (grows well at low temperatures) in Europe and Japan than in the United States where it is bacterium. There are approximately 60 serogroups of Y. considered relatively rare. According to the Centers for enterocolitica, of which only 11 are infectious to humans. Disease Control and Prevention (CDC), approximately Of the most common serogroups—O:3, O:8, O:9, and one confirmed Y. -
Nonpathogenic Isolates of Yersinia Enterocolitica Do Not Contain Functional Inv-Homologous Sequences DOROTHY E
INFECTION AND IMMUNITY, Apr. 1990, p. 1059-1064 Vol. 58, No. 4 0019-9567/90/041059-06$02.00/0 Copyright C) 1990, American Society for Microbiology Nonpathogenic Isolates of Yersinia enterocolitica Do Not Contain Functional inv-Homologous Sequences DOROTHY E. PIERSON* AND STANLEY FALKOW Department of Microbiology and Immunology, Stanford University, Stanford, California 94305-5402 Received 1 August 1989/Accepted 15 December 1989 Previous studies have demonstrated a correlation between the ability of isolates of Yersinia enterocolitica to cause disease and to invade tissue culture cells in vitro. Two genes, inv and ail, isolated from a pathogenic strain of Y. enterocolitica have each been shown to confer this invasive phenotype upon Escherichia coli. Eighty pathogenic, invasive isolates studied by Miller et al. (Infect. Immun. 57:121-131, 1989) contained sequences homologous to both of these genes. Thirty-five nonpathogenic, noninvasive isolates similarly studied had no ail homology but carried inv-homologous sequences. We investigated inv-homologous sequences from four nonpathogenic isolates. Recombinant clones of these inv-homologous sequences did not confer the invasive phenotype upon E. coli. No RNA transcripts capable of encoding a full-length Inv protein were detected in the four noninvasive Yersinia strains. When the inv gene from a pathogenic isolate was introduced into two of these strains, the resulting transformants invaded tissue culture cells in vitro. The inv gene was transcribed in a pathogenic Yersinia isolate grown at 30°C but not at all in these cells grown at 37°C. The production of RNA transcripts homologous to inv in transformants was not regulated by temperature to the same degree as was seen for pathogenic isolates. -
Original Article COMPARISON of MAST BURKHOLDERIA CEPACIA, ASHDOWN + GENTAMICIN, and BURKHOLDERIA PSEUDOMALLEI SELECTIVE AGAR
European Journal of Microbiology and Immunology 7 (2017) 1, pp. 15–36 Original article DOI: 10.1556/1886.2016.00037 COMPARISON OF MAST BURKHOLDERIA CEPACIA, ASHDOWN + GENTAMICIN, AND BURKHOLDERIA PSEUDOMALLEI SELECTIVE AGAR FOR THE SELECTIVE GROWTH OF BURKHOLDERIA SPP. Carola Edler1, Henri Derschum2, Mirko Köhler3, Heinrich Neubauer4, Hagen Frickmann5,6,*, Ralf Matthias Hagen7 1 Department of Dermatology, German Armed Forces Hospital of Hamburg, Hamburg, Germany 2 CBRN Defence, Safety and Environmental Protection School, Science Division 3 Bundeswehr Medical Academy, Munich, Germany 4 Friedrich Loeffler Institute, Federal Research Institute for Animal Health, Jena, Germany 5 Department of Tropical Medicine at the Bernhard Nocht Institute, German Armed Forces Hospital of Hamburg, Hamburg, Germany 6 Institute for Medical Microbiology, Virology and Hygiene, University Medicine Rostock, Rostock, Germany 7 Department of Preventive Medicine, Bundeswehr Medical Academy, Munich, Germany Received: November 18, 2016; Accepted: December 5, 2016 Reliable identification of pathogenic Burkholderia spp. like Burkholderia mallei and Burkholderia pseudomallei in clinical samples is desirable. Three different selective media were assessed for reliability and selectivity with various Burkholderia spp. and non- target organisms. Mast Burkholderia cepacia agar, Ashdown + gentamicin agar, and B. pseudomallei selective agar were compared. A panel of 116 reference strains and well-characterized clinical isolates, comprising 30 B. pseudomallei, 20 B. mallei, 18 other Burkholderia spp., and 48 nontarget organisms, was used for this assessment. While all B. pseudomallei strains grew on all three tested selective agars, the other Burkholderia spp. showed a diverse growth pattern. Nontarget organisms, i.e., nonfermentative rod-shaped bacteria, other species, and yeasts, grew on all selective agars. -
Plesiomonas Shigelloides S000142446 Serratia Plymuthica
0.01 Plesiomonas shigelloides S000142446 Serratia plymuthica S000016955 Serratia ficaria S000010445 Serratia entomophila S000015406 Leads to highlighted edge in Supplemental Phylogeny 1 Xenorhabdus hominickii S000735562 0.904 Xenorhabdus poinarii S000413914 0.998 0.868 Xenorhabdus griffiniae S000735553 Proteus myxofaciens S000728630 0.862 Proteus vulgaris S000004373 Proteus mirabilis S000728627 0.990 0.822 Arsenophonus nasoniae S000404964 OTU from Corby-Harris (Unpublished) #seqs-1 GQ988429 OTU from Corby-Harris et al (2007) #seqs-1 DQ980880 0.838 Providencia stuartii S000001277 Providencia rettgeri S000544654 0.999 Providencia vermicola S000544657 0.980 Isolate from Juneja and Lazzaro (2009)-EU587107 Isolate from Juneja and Lazzaro (2009)-EU587113 0.605 0.928 Isolate from Juneja and Lazzaro (2009)-EU587095 0.588 Isolate from Juneja and Lazzaro (2009)-EU587101 Providencia rustigianii S000544651 0.575 Providencia alcalifaciens S000127327 0.962 OTU XDS 099-#libs(1/0)-#seqs(1/0) OTU XYM 085-#libs(13/4)-#seqs(401/23) 0.620 OTU XDY 021-#libs(1/1)-#seqs(3/1) Providencia heimbachae S000544652 Morganella psychrotolerans S000721631 0.994 Morganella morganii S000721642 OTU ICF 062-#libs(0/1)-#seqs(0/7) Morganella morganii S000129416 0.990 Biostraticola tofi S000901778 0.783 Sodalis glossinidius S000436949 Dickeya dadantii S000570097 0.869 0.907 0.526 Brenneria rubrifaciens S000022162 0.229 Brenneria salicis S000381181 0.806 OTU SEC 066-#libs(0/1)-#seqs(0/1) Brenneria quercina S000005099 0.995 Pragia fontium S000022757 Budvicia aquatica S000020702 -
Antarctic Rahnella Inusitata: a Producer of Cold-Stable Β-Galactosidase Enzymes
International Journal of Molecular Sciences Article Antarctic Rahnella inusitata: A Producer of Cold-Stable β-Galactosidase Enzymes Kattia Núñez-Montero 1,2,†, Rodrigo Salazar 1,3,†, Andrés Santos 1,3,†, Olman Gómez-Espinoza 2,4 , Scandar Farah 1 , Claudia Troncoso 1,3 , Catalina Hoffmann 1, Damaris Melivilu 1, Felipe Scott 5 and Leticia Barrientos Díaz 1,* 1 Laboratory of Molecular Applied Biology, Center of Excellence in Translational Medicine, Universidad de La Frontera, Avenida Alemania 0458, Temuco 4810296, Chile; [email protected] (K.N.-M.); [email protected] (R.S.); [email protected] (A.S.); [email protected] (S.F.); [email protected] (C.T.); [email protected] (C.H.); [email protected] (D.M.) 2 Biotechnology Investigation Center, Department of Biology, Instituto Tecnológico de Costa Rica, Cartago 159-7050, Costa Rica; [email protected] 3 Scientific and Technological Bioresource Nucleus (BIOREN), Universidad de La Frontera, Temuco 4811230, Chile 4 Laboratory of Plant Physiology and Molecular Biology, Institute of Agroindustry, Department of Agronomic Sciences and Natural Resources, Faculty of Agricultural and Forestry Sciences, Universidad de La Frontera, Temuco 4811230, Chile 5 Green Technology Research Group, Facultad de Ingenieria y Ciencias Aplicadas, Universidad de los Andes, Santiago 7620001, Chile; [email protected] * Correspondence: [email protected]; Tel.: +56-45-259-2802 Citation: Núñez-Montero, K.; † These authors contributed equally to this work. Salazar, R.; Santos, A.; Gómez- Espinoza, O.; Farah, S.; Troncoso, C.; Abstract: There has been a recent increase in the exploration of cold-active β-galactosidases, as it Hoffmann, C.; Melivilu, D.; Scott, F.; offers new alternatives for the dairy industry, mainly in response to the current needs of lactose- Barrientos Díaz, L. -
Yersinia Aldovae (Formerly Yersinia Enterocolitica-Like Group X2): a New Species of Enterobacteriaceae Isolated from Aquatic Ecosystems HERVE BERCOVIER,'T ARNOLD G
INTERNATIONALJOURNAL OF SYSTEMATICBACTERIOLOGY, Apr. 1984, p. 166-172 Vol. 34, No. 2 OO20-7713/84/020166-07$02.00/0 Yersinia aldovae (Formerly Yersinia enterocolitica-Like Group X2): a New Species of Enterobacteriaceae Isolated from Aquatic Ecosystems HERVE BERCOVIER,'t ARNOLD G. STEIGERWALT,2 ANNIE GUIYOULE,' GERALDINE HUNTLEY-CARTER,3 AND DON J. BRENNER2* Centre National des Yersinia, fnstitut Pasteur, 15724 Paris, Cedek 15, France,' and Molecular Biology Laboratory, Biotechnology Branch,2 and Enteric Laboratory Section, Enteric Diseases Branch13Division of Bacterial Diseases, Center for Infectious Diseases, Centers for Disease Control, Atlanta, Georgia 30333 Previously, a group of 40 Yersinia enterocolitica-like strains that were isolated from water and fish were called group X2. These strains produced acid from L-rhamnose, did not ferment sorbose, cellobiose, melibiose, or raffinose, and rarely fermented sucrose (5% in 48 h, 10% in 7 days). This pattern of reactions separated group X2 strains from Yersinia enterocolitica, Yersinia intermedia, Yersinia frederiksenii, and Yersinia kristensenii. Positive reactions for acetoin production (Voges-Proskauer test), ornithine decarbox- ylase, and lack of acid production from melibiose distinguished group X2 strains from both Yersinia pseudotuberculosis and Yersinia pestis. Group X2 strains exhibited variable reactions only in tests for citrate utilization, hydrolysis of Tween 80, and acid production from maltose. Genetically, group X2 strains formed a single deoxyribonucleic acid hybridization group with an average level of relatedness of 86% or more (86% as determined by the S1 method at 60°C or by the hydroxyapatite method at 75°C and 92% as determined by the hydroxyapatite method at 60°C). The level of divergence among related sequences in 60°C reactions was 0.5%, as determined by the hydroxyapatite method.