(PIF*) Promotes Embryotrophic and Neuroprotective Decidual Genes
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Novel Insights in Commercial in Vitro Embryo Production in Cattle
Novel insights in commercial in vitro embryo production in cattle Maaike Catteeuw Promoter: Prof. dr. Ann Van Soom Copromoters: Prof. dr. Joris Vermeesch, Dr. Katrien Smits Dissertation submitted to Ghent University in fulfilment of the requirements for the degree of Doctor of Philosophy (PhD) in Veterinary Sciences 2018 Department of Reproduction, Obstetrics and Herd Health, Faculty of Veterinary Medicine Members of the examination committee Prof. dr. Herman Favoreel Chairman – Faculty of Veterinary Medicine, Ghent University, Belgium Prof. dr. Bjorn Heindryckx Faculty of Medicine and Health Sciences, Ghent University, Belgium Prof. dr. Luc Peelman Faculty of Veterinary Medicine, Ghent University, Belgium Prof. dr. Geert Opsomer Faculty of Veterinary Medicine, Ghent University, Belgium Dr. Erik Mullaart CRV BV, the Netherlands Dr. Karen Goossens Research institute for Agriculture, Fisheries and Food (ILVO), Belgium Funding Project G039214N: Chromosomal instability during early embryonic development: elucidating key mechanisms in a bovine model Printed by University Press, Zelzate TABLE OF CONTENTS LIST OF ABBREVIATIONS CHAPTER 1 GENERAL INTRODUCTION 7 1.1 ASSISTED REPRODUCTIVE TECHNOLOGIES IN CATTLE 9 1.2 COMMERCIAL IN VITRO EMBRYO PRODUCTION 11 1.3 QUALITY ASSESSMENT OF EMBRYONIC DEVELOPMENT 25 1.4 GENETIC DISORDERS AND CHROMOSOMAL ABNORMALITIES IN CATTLE 34 1.5 CHROMOSOMAL ABNORMALITIES IN HUMAN EMBRYOS AND THE BOVINE MODEL 35 1.5 REFERENCES 37 CHAPTER 2 AIMS OF THE STUDY 51 CHAPTER 3 HOLDING IMMATURE BOVINE OOCYTES IN A COMMERCIAL -
Mtorc1-Independent Autophagy Regulates Receptor Tyrosine Kinase Phosphorylation in Colorectal Cancer Cells Via an Mtorc2-Mediated Mechanism
Cell Death and Differentiation (2017) 24, 1045–1062 & 2017 Macmillan Publishers Limited, part of Springer Nature. All rights reserved 1350-9047/17 www.nature.com/cdd mTORC1-independent autophagy regulates receptor tyrosine kinase phosphorylation in colorectal cancer cells via an mTORC2-mediated mechanism Aikaterini Lampada1,2, James O’Prey3, Gyorgy Szabadkai4, Kevin M Ryan3, Daniel Hochhauser*,2,5 and Paolo Salomoni*,1,5 The intracellular autophagic degradative pathway can have a tumour suppressive or tumour-promoting role depending on the stage of tumour development. Upon starvation or targeting of oncogenic receptor tyrosine kinases (RTKs), autophagy is activated owing to the inhibition of PI3K/AKT/mTORC1 signalling pathway and promotes survival, suggesting that autophagy is a relevant therapeutic target in these settings. However, the role of autophagy in cancer cells where the PI3K/AKT/mTORC1 pathway is constitutively active remains partially understood. Here we report a role for mTORC1-independent basal autophagy in regulation of RTK activation and cell migration in colorectal cancer (CRC) cells. PI3K and RAS-mutant CRC cells display basal autophagy levels despite constitutive mTORC1 signalling, but fail to increase autophagic flux upon RTK inhibition. Inhibition of basal autophagy via knockdown of ATG7 or ATG5 leads to decreased phosphorylation of several RTKs, in particular c-MET. Internalised c-MET colocalised with LAMP1-negative, LC3-positive vesicles. Finally, autophagy regulates c-MET phosphorylation via an mTORC2- dependent -
2123 Genes Regulating Implantation and Fetal Development
[Frontiers in Bioscience 11, 2123-2137, September 1, 2006] Genes regulating implantation and fetal development: a focus on mouse knockout models 1 1 2 ,3 Surendra Sharma , Shaun P. Murphy , and Eytan R. Barnea 1 Departments of Pediatrics and Pathology, Women and Infants’ Hospital of Rhode Island-Brown University, Providence, RI, 2 SIEP, the Society for the Investigation of Early Pregnancy, Cherry Hill, NJ and 3 Department of Obstetrics, Gynecology and Reproductive Sciences, UMDNJ/Robert Wood Johnson Medical School, Camden, NJ TABLE OF CONTENTS 1. Abstract 2. Introduction 3. Endogeous gene expression 3.1. Gene expression in blastocyst implantation 3.2. Gene expression (silencing) in the embryo 4. Mouse knockout models of reproductive-related genes 4.1. Cytokines 4.2. Cyclooxygenase-2 4.3. Insulin-like growth factor system 4.4. Matrix metalloproteinase system 4.5. Transcription factors involved in placental development 4.6. Indolamine-2,3-dioxygenase 5. Conclusions 6. Acknowledgements 7. References 1. ABSTRACT 2. INTRODUCTION Timely and efficient regulation of blastocyst Mammalian reproduction represents a highly implantation and fetal growth are essential for the orchestrated and intricate process. The spatial and successful reproduction of viviparous mammals. temporal regulation of a fetal-maternal crosstalk is required Disruptions in this regulation can result in a wide variety of for a successful pregnancy (1-5). After fertilization, the human gestational complications including infertility, developing blastocyst must invade and establish itself in the spontaneous abortion, fetal growth restriction, and maternal endometrium, from which it will eventually gain premature delivery. The role of several groups of factors, the crucial protection and nourishment required for including cytokines, hormones, transcription factors, extra- development throughout gestation. -
Development and Validation of a Protein-Based Risk Score for Cardiovascular Outcomes Among Patients with Stable Coronary Heart Disease
Supplementary Online Content Ganz P, Heidecker B, Hveem K, et al. Development and validation of a protein-based risk score for cardiovascular outcomes among patients with stable coronary heart disease. JAMA. doi: 10.1001/jama.2016.5951 eTable 1. List of 1130 Proteins Measured by Somalogic’s Modified Aptamer-Based Proteomic Assay eTable 2. Coefficients for Weibull Recalibration Model Applied to 9-Protein Model eFigure 1. Median Protein Levels in Derivation and Validation Cohort eTable 3. Coefficients for the Recalibration Model Applied to Refit Framingham eFigure 2. Calibration Plots for the Refit Framingham Model eTable 4. List of 200 Proteins Associated With the Risk of MI, Stroke, Heart Failure, and Death eFigure 3. Hazard Ratios of Lasso Selected Proteins for Primary End Point of MI, Stroke, Heart Failure, and Death eFigure 4. 9-Protein Prognostic Model Hazard Ratios Adjusted for Framingham Variables eFigure 5. 9-Protein Risk Scores by Event Type This supplementary material has been provided by the authors to give readers additional information about their work. Downloaded From: https://jamanetwork.com/ on 10/02/2021 Supplemental Material Table of Contents 1 Study Design and Data Processing ......................................................................................................... 3 2 Table of 1130 Proteins Measured .......................................................................................................... 4 3 Variable Selection and Statistical Modeling ........................................................................................ -
Protein Tyrosine Kinases: Their Roles and Their Targeting in Leukemia
cancers Review Protein Tyrosine Kinases: Their Roles and Their Targeting in Leukemia Kalpana K. Bhanumathy 1,*, Amrutha Balagopal 1, Frederick S. Vizeacoumar 2 , Franco J. Vizeacoumar 1,3, Andrew Freywald 2 and Vincenzo Giambra 4,* 1 Division of Oncology, College of Medicine, University of Saskatchewan, Saskatoon, SK S7N 5E5, Canada; [email protected] (A.B.); [email protected] (F.J.V.) 2 Department of Pathology and Laboratory Medicine, College of Medicine, University of Saskatchewan, Saskatoon, SK S7N 5E5, Canada; [email protected] (F.S.V.); [email protected] (A.F.) 3 Cancer Research Department, Saskatchewan Cancer Agency, 107 Wiggins Road, Saskatoon, SK S7N 5E5, Canada 4 Institute for Stem Cell Biology, Regenerative Medicine and Innovative Therapies (ISBReMIT), Fondazione IRCCS Casa Sollievo della Sofferenza, 71013 San Giovanni Rotondo, FG, Italy * Correspondence: [email protected] (K.K.B.); [email protected] (V.G.); Tel.: +1-(306)-716-7456 (K.K.B.); +39-0882-416574 (V.G.) Simple Summary: Protein phosphorylation is a key regulatory mechanism that controls a wide variety of cellular responses. This process is catalysed by the members of the protein kinase su- perfamily that are classified into two main families based on their ability to phosphorylate either tyrosine or serine and threonine residues in their substrates. Massive research efforts have been invested in dissecting the functions of tyrosine kinases, revealing their importance in the initiation and progression of human malignancies. Based on these investigations, numerous tyrosine kinase inhibitors have been included in clinical protocols and proved to be effective in targeted therapies for various haematological malignancies. -
United States Patent 19 11 Patent Number: 5,646,003 Barnea Et Al
US005646003A United States Patent 19 11 Patent Number: 5,646,003 Barnea et al. 45 Date of Patent: Jul. 8, 1997 54 PREIMPLANTATION FACTOR Collier M, O'Neill C, Ammit AJ, Saunders DM, Biochemi cal and pharmacological characterization of human embryo 76) Inventors: Eytan R. Barnea, 1697 Lark La., -derived activating factor. Hum Reprod. 1988:3:993-998. Cherry Hill, N.J. 08003; Carolyn B. O'Neill C, Gidley-Baird AA, Amnit AJ. Saunders DM. Use Coulam, 11015 Bryar Lynn Ct., Fairfax of a bioassay for embryo-derived platelet activating factor Sta. Va., 22039 as a means of assessing quality and pregnancy potential of human embryos. Fertill Steril. 1987:47:967-975. 21 Appl. No.: 216,618 O'Neill C. Gidley-Baird AL, Pike AL, Porter RN, Sinosich MJ, Saunders DM. Maternal blood platelet physiology and (22 Filed: Mar 23, 1994 luteal phase endocrinology as a means of monitoring preand (51 int. Cl. ................... G01N 33/53 postimplantation embryo viability following in vitro fertili zation. J. Vitro Fertil Embryo Transfer. 1985:2:59-65. 52 U.S. Cl. ........................ 435/7.24; 435/723; 435/806; O'Neill C, Collier M. Saunders DM. Embryo-derived plate 436/501; 436/510 let activating factor: its diagnosis and therapeutic future. 58 Field of Search ................................ 435/723, 7.24, Ann NY Acad Sci. 1988:541:398-403. 435/806; 436/501, 510 Smart YC, Roberts TK, Clancy RL, Cripps AW. Early 56 References Cited pregnancy factor: its role in mammalian reproduction-re search review. Ferti Steril. 1981:35:397-403. PUBLICATIONS Chen C. Jones WR, Bastin F. -
Ephrin A4-Ephrin Receptor A10 Signaling Promotes Cell Migration
www.nature.com/scientificreports OPEN Ephrin A4‑ephrin receptor A10 signaling promotes cell migration and spheroid formation by upregulating NANOG expression in oral squamous cell carcinoma cells Yu‑Lin Chen1, Yi‑Chen Yen1, Chuan‑Wei Jang1, Ssu‑Han Wang1, Hsin‑Ting Huang1, Chung‑Hsing Chen2,3, Jenn‑Ren Hsiao4, Jang‑Yang Chang1 & Ya‑Wen Chen1,5* Ephrin type‑A receptor 10 (EPHA10) has been implicated as a potential target for breast and prostate cancer therapy. However, its involvement in oral squamous cell carcinoma (OSCC) remains unclear. We demonstrated that EPHA10 supports in vivo tumor growth and lymphatic metastasis of OSCC cells. OSCC cell migration, epithelial mesenchymal transition (EMT), and sphere formation were found to be regulated by EPHA10, and EPHA10 was found to drive expression of some EMT‑ and stemness‑ associated transcription factors. Among EPHA10 ligands, exogenous ephrin A4 (EFNA4) induced the most OSCC cell migration and sphere formation, as well as up‑regulation of SNAIL, NANOG, and OCT4. These efects were abolished by extracellular signal‑regulated kinase (ERK) inhibition and NANOG knockdown. Also, EPHA10 was required for EFNA4‑induced cell migration, sphere formation, and expression of NANOG and OCT4 mRNA. Our microarray dataset revealed that EFNA4 mRNA expression was associated with expression of NANOG and OCT4 mRNA, and OSCC patients showing high co‑expression of EFNA4 with NANOG or OCT4 mRNA demonstrated poor recurrence‑free survival rates. Targeting forward signaling of the EFNA4‑EPHA10 axis may be a promising therapeutic approach for oral malignancies, and the combination of EFNA4 mRNA and downstream gene expression may be a useful prognostic biomarker for OSCC. -
Neurod Family Transcription Factors Regulate Corpus Callosum Formation and Cell Differentiation During Cerebral Cortical Development
Aus dem Institut für Cell und Neurobiologie der Medizinischen Fakultät Charité – Universitätsmedizin Berlin DISSERTATION NeuroD Family Transcription Factors Regulate Corpus Callosum Formation and Cell Differentiation during Cerebral Cortical Development zur Erlangung des akademischen Grades Doctor of Philosophy (PhD) Im Rahmen des International Graduate Program Medical Neurosciences vorgelegt der Medizinischen Fakultät Charité – Universitätsmedizin Berlin von Kuo Yan aus: Jinan, China Datum der Promotion: 5. Juni 2016 1 Table of Contents Abstract .................................................................................................................... 5 Zusammenfassung .................................................................................................. 7 1. Introduction ......................................................................................................... 9 1.1 Cerebral cortex development ………………………………………...................... 9 1.1.1 Layering and wiring of the neocortex ........................................................... 9 1.1.2 Formation of the corpus callosum ................................................................ 12 1.2 Basic helix-loop-helix transcription factors ........................................................ 13 1.2.1 NeuroD family transcription factors .............................................................. 14 1.2.2 NeuroD2/6 double deficient mice as a model for axogenesis study ............ 15 1.3 Ephrin-Eph signaling ........................................................................................ -
(PIF) Protects Cultured Embryos Against Oxidative Stress: Relevance for Recurrent Pregnancy Loss (RPL) Therapy
www.impactjournals.com/oncotarget/ Oncotarget, 2017, Vol. 8, (No. 20), pp: 32419-32432 Research Paper: Autophagy and Cell Death PreImplantation factor (PIF) protects cultured embryos against oxidative stress: relevance for recurrent pregnancy loss (RPL) therapy Lindsay F. Goodale1,6, Soren Hayrabedyan2, Krassimira Todorova2, Roumen Roussev3, Sivakumar Ramu3,8, Christopher Stamatkin3,9, Carolyn B. Coulam3, Eytan R. Barnea4,5,* and Robert O. Gilbert1,7,* 1 Department of Clinical Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY, USA 2 Institute of Biology and Immunology of Reproduction, Bulgarian Academy of Sciences, Sofia, Bulgaria 3 CARI Reproductive Institute, Chicago, IL, USA 4 BioIncept, LLC, Cherry Hill, NJ, USA 5 Society for the Investigation of Early Pregnancy (SIEP), Cherry Hill, NJ, USA 6 Department of Population Health and Reproduction, School of Veterinary Medicine, University of California-Davis, Davis, CA, USA 7 Ross University School of Veterinary Medicine, Basseterre, St. Kitts, West Indies 8 Promigen Life Sciences, Downers Grove, IL, USA 9 Therapeutic Validation Core, Indiana University Simon Cancer Center, Indiana University School of Medicine, Indianapolis, IN, USA * These authors have contributed equally to this work Correspondence to: Eytan R. Barnea, email: [email protected] Keywords: recurrent pregnancy loss, preImplantation factor (PIF), oxidative stress, PDI, embryo, Autophagy Received: December 05, 2016 Accepted: February 22, 2017 Published: March 08, 2017 Copyright: Goodale et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC-BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. ABSTRACT Recurrent pregnancy loss (RPL) affects 2-3% of couples. -
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REPRODUCTIONREVIEW The embryonic stress response to in vitro culture: insight from genomic analysis Gael Cagnone and Marc-André Sirard Département des Sciences Animales Pavillon des services, Université Laval, Quebec, QC, Canada Correspondence should be addressed to G Cagnone; Email: [email protected] Abstract Recent genomic studies have shed light on the impact of in vitro culture (IVC) on embryonic homeostasis and the differential gene expression profiles associated with lower developmental competence. Consistently, the embryonic stress responses to IVC conditions correlate with transcriptomic changes in pathways related to energetic metabolism, extracellular matrix remodelling and inflammatory signalling. These changes appear to result from a developmental adaptation that enhances a Warburg-like effect known to occur naturally during blastulation. First discovered in cancer cells, the Warburg effect (increased glycolysis under aerobic conditions) is thought to result from mitochondrial dysfunction. In the case of IVC embryos, culture conditions may interfere with mitochondrial maturation and oxidative phosphorylation, forcing cells to rely on glycolysis in order to maintain energetic homeostasis. While beneficial in the short term, such adaptations may lead to epigenetic changes with potential long-term effects on implantation, foetal growth and post-natal health. We conclude that lessening the detrimental effects of IVC on mitochondrial activity would lead to significantly improved embryo quality. Reproduction (2016) 152 R247–R261 -
YALE OBSTETRICAL and GYNECOLOGICAL SOCIETY YOGS Spring 2012 Volume 5
YALE OBSTETRICAL AND GYNECOLOGICAL SOCIETY YOGS Spring 2012 Volume 5 THE JOURNAL FOR ALUMNI AND FRIENDS OF YALE OB/GYN THE JOURNAL FOR ALUMNI AND FRIENDS OF YALE OB/GYN 2011 YOGS Alumni & Friends Contributors Editor-In-Chief – Mary Jane Minkin, MD Managing Editor – Dianna Malvey The YOGS Journal is published yearly by the Yale University Department of Obstetrics, Gynecology and Reproductive Sciences, PO Box 208063, FMB 337, New Haven, Connecticut 06520-8063. Tel: 203-737-4593; Fax: 203-737-1883 http://medicine.yale.edu/obgyn/yogs/index.aspx Copyright © 2012 Yale University School of Medicine. All Rights Reserved. Cover Photo: Yale University, Terry DaGradi, Yale Photo & Design. All Rights Reserved. I THE JOURNAL FOR ALUMNI AND FRIENDS OF YALE OB/GYN TABLE OF CONTENTS Editor’s Note 2 Historical Note 3 Residents’ Research Day Visiting Professor Grand Rounds 4 Other Selected Grand Rounds Presentations 6 Residents’ Research Day - Abstracts of Resident Presentations 23 Abstracts from Recent Scientific Meetings 29 The Year in Review 38 Photo Highlights 46 News Items 50 Forms 59 1 YALE OBSTETRICAL AND GYNECOLOGICAL SOCIETY EDITOR’S NOTE Another momentous year Of course, we will update you on the research here in New Haven! As and clinical progress of our sections and the prog- most of you know, de- ress of our trainees, who continue to go out into spite the many charms the world and promote our field. of New Haven, Dr. Lock- wood has left us to as- We hope that many of you will be joining us here sume the Dean’s post at in New Haven on May 12, when we celebrate The Ohio State University the career of Yale’s first female resident, Dr. -
Eph Receptor Signalling: from Catalytic to Non-Catalytic Functions
Oncogene (2019) 38:6567–6584 https://doi.org/10.1038/s41388-019-0931-2 REVIEW ARTICLE Eph receptor signalling: from catalytic to non-catalytic functions 1,2 1,2 3 1,2 1,2 Lung-Yu Liang ● Onisha Patel ● Peter W. Janes ● James M. Murphy ● Isabelle S. Lucet Received: 20 March 2019 / Revised: 23 July 2019 / Accepted: 24 July 2019 / Published online: 12 August 2019 © The Author(s) 2019. This article is published with open access Abstract Eph receptors, the largest subfamily of receptor tyrosine kinases, are linked with proliferative disease, such as cancer, as a result of their deregulated expression or mutation. Unlike other tyrosine kinases that have been clinically targeted, the development of therapeutics against Eph receptors remains at a relatively early stage. The major reason is the limited understanding on the Eph receptor regulatory mechanisms at a molecular level. The complexity in understanding Eph signalling in cells arises due to following reasons: (1) Eph receptors comprise 14 members, two of which are pseudokinases, EphA10 and EphB6, with relatively uncharacterised function; (2) activation of Eph receptors results in dimerisation, oligomerisation and formation of clustered signalling centres at the plasma membrane, which can comprise different combinations of Eph receptors, leading to diverse downstream signalling outputs; (3) the non-catalytic functions of Eph receptors have been overlooked. This review provides a structural perspective of the intricate molecular mechanisms that 1234567890();,: 1234567890();,: drive Eph receptor signalling, and investigates the contribution of intra- and inter-molecular interactions between Eph receptors intracellular domains and their major binding partners. We focus on the non-catalytic functions of Eph receptors with relevance to cancer, which are further substantiated by exploring the role of the two pseudokinase Eph receptors, EphA10 and EphB6.