The NLRP3 Inflammasome and Its Role in the Pathogenicity of Leukemia
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Active Gasdermin D Forms Plasma Membrane Pores And
ACTIVE GASDERMIN D FORMS PLASMA MEMBRANE PORES AND DISRUPTS INTRACELLULAR COMPARTMENTS TO EXECUTE PYROPTOTIC DEATH IN MACROPHAGES DURING CANONICAL INFLAMMASOME ACTIVATION by HANA RUSSO Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy Dissertation Advisor: George R. Dubyak, Ph.D. Department of Pathology Immunology Training Program CASE WESTERN RESERVE UNIVERSITY August, 2017 CASE WESTERN RESERVE UNIVERSITY SCHOOL OF GRADUATE STUDIES We hereby approve the thesis/dissertation of Hana Russo candidate for the degree of Doctor of Philosophy Alan Levine (Committee Chair) Clifford Harding Pamela Wearsch Carlos Subauste Clive Hamlin George Dubyak Date of Defense April 26, 2017 We also certify that written approval has been obtained for any proprietary material contained therein. Table of Contents List of Figures iv List of Tables vii List of Abbreviations viii Acknowledgements xii Abstract 1 Chapter 1: Introduction 1.1: Clinical relevance of pyroptosis 4 1.2: Pyroptosis requires inflammasome activation 4 1.2a: Non-canonical inflammasome complex 6 1.2b: Canonical inflammasome complexes 6 1.3: Role of pyroptosis in host defense and disease 13 1.4: N-terminal Gsdmd constitutes the pyroptotic pore 15 1.5: IL-1β biology and mechanism of release 19 1.6: Cell type specificity of pyroptosis 25 1.7: The gasdermin family 26 1.8: Apoptotic signaling during inflammasome activation in the absence of caspase-1 or Gsdmd 28 1.9: NLRP3 inflammasome-mediated organelle dysfunction 29 1.10: Objective of Dissertation Research -
Gasdermin D Promotes AIM2 Inflammasome Activation and Is Required for Host Protection Against Francisella Novicida
Gasdermin D Promotes AIM2 Inflammasome Activation and Is Required for Host Protection against Francisella novicida This information is current as Qifan Zhu, Min Zheng, Arjun Balakrishnan, Rajendra Karki of September 26, 2021. and Thirumala-Devi Kanneganti J Immunol published online 7 November 2018 http://www.jimmunol.org/content/early/2018/11/06/jimmun ol.1800788 Downloaded from Supplementary http://www.jimmunol.org/content/suppl/2018/11/06/jimmunol.180078 Material 8.DCSupplemental http://www.jimmunol.org/ Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication by guest on September 26, 2021 *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2018 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. Published November 7, 2018, doi:10.4049/jimmunol.1800788 The Journal of Immunology Gasdermin D Promotes AIM2 Inflammasome Activation and Is Required for Host Protection against Francisella novicida Qifan Zhu,*,† Min Zheng,* Arjun Balakrishnan,* Rajendra Karki,* and Thirumala-Devi Kanneganti* The DNA sensor absent in melanoma 2 (AIM2) forms an inflammasome complex with ASC and caspase-1 in response to Francisella tularensis subspecies novicida infection, leading to maturation of IL-1b and IL-18 and pyroptosis. -
PRODUCT INFORMATION Dapansutrile Item No
PRODUCT INFORMATION Dapansutrile Item No. 24671 CAS Registry No.: 54863-37-5 Formal Name: 3-(methylsulfonyl)-propanenitrile Synonym: 3-methanesulfonyl Propanenitrile OO MF: C H NO S 4 7 2 S FW: 133.2 CN Purity: ≥98% Supplied as: A crystalline solid Storage: -20°C Stability: ≥2 years Information represents the product specifications. Batch specific analytical results are provided on each certificate of analysis. Laboratory Procedures Dapansutrile is supplied as a crystalline solid. A stock solution may be made by dissolving the dapansutrilein the solvent of choice. Dapansutrile is soluble in the organic solvent DMSO, which should be purged with an inert gas at a concentration of approximately 2 mg/ml. Further dilutions of the stock solution into aqueous buffers or isotonic saline should be made prior to performing biological experiments. Ensure that the residual amount of organic solvent is insignificant, since organic solvents may have physiological effects at low concentrations. Organic solvent-free aqueous solutions of dapansutrile can be prepared by directly dissolving the crystalline solid in aqueous buffers. The solubility of dapansutrile in PBS, pH 7.2, is approximately 3 mg/ml. We do not recommend storing the aqueous solution for more than one day. Description Dapansutrile is a β-sulfonyl nitrile inhibitor of the NLRP3 inflammasome that inhibits the release of IL-1β and decreases caspase-1 levels in LPS-stimulated J774A.1 murine macrophages, human monocyte derived macrophages (HMDMs), and primary human blood neutrophils without affecting TNF-α release.1 It is selective for NLRP3 over NLRP4 and AIM2 inflammasomes at concentrations up to 100 μM. -
RIPK1 Activates Distinct Gasdermins in Macrophages and Neutrophils Upon Pathogen Blockade of Innate Immune Signalling
bioRxiv preprint doi: https://doi.org/10.1101/2021.01.20.427379; this version posted January 20, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. RIPK1 activates distinct gasdermins in macrophages and neutrophils upon pathogen blockade of innate immune signalling Kaiwen W. Chen1,2,#, Benjamin Demarco1, Rosalie Heilig1, Saray P Ramos1, James P Grayczyk3, Charles-Antoine Assenmacher3, Enrico Radaelli3, Leonel D. Joannas4,5, Jorge Henao-Mejia4,5,6, Igor E Brodsky3,5, Petr Broz1# 1Department of Biochemistry, University of Lausanne, CH-1066 Epalinges, Switzerland 2Immunology Programme and Department of Microbiology & Immunology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore 3Department of Pathobiology, University of Pennsylvania School of Veterinary Medicine, Philadelphia, PA, USA 4Department of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA. 5Institue for Immunology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA 6Division of Protective Immunity, Department of Pathology and Laboratory Medicine, Children’s Hospital of Philadelphia, University of Pennsylvania, Philadelphia, PA 19104, USA. #Correspondence to: [email protected] or [email protected] Keywords: gasdermin, RIPK1, Yersinia, caspase-8, IL-1 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.01.20.427379; this version posted January 20, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
ATP-Binding and Hydrolysis in Inflammasome Activation
molecules Review ATP-Binding and Hydrolysis in Inflammasome Activation Christina F. Sandall, Bjoern K. Ziehr and Justin A. MacDonald * Department of Biochemistry & Molecular Biology, Cumming School of Medicine, University of Calgary, 3280 Hospital Drive NW, Calgary, AB T2N 4Z6, Canada; [email protected] (C.F.S.); [email protected] (B.K.Z.) * Correspondence: [email protected]; Tel.: +1-403-210-8433 Academic Editor: Massimo Bertinaria Received: 15 September 2020; Accepted: 3 October 2020; Published: 7 October 2020 Abstract: The prototypical model for NOD-like receptor (NLR) inflammasome assembly includes nucleotide-dependent activation of the NLR downstream of pathogen- or danger-associated molecular pattern (PAMP or DAMP) recognition, followed by nucleation of hetero-oligomeric platforms that lie upstream of inflammatory responses associated with innate immunity. As members of the STAND ATPases, the NLRs are generally thought to share a similar model of ATP-dependent activation and effect. However, recent observations have challenged this paradigm to reveal novel and complex biochemical processes to discern NLRs from other STAND proteins. In this review, we highlight past findings that identify the regulatory importance of conserved ATP-binding and hydrolysis motifs within the nucleotide-binding NACHT domain of NLRs and explore recent breakthroughs that generate connections between NLR protein structure and function. Indeed, newly deposited NLR structures for NLRC4 and NLRP3 have provided unique perspectives on the ATP-dependency of inflammasome activation. Novel molecular dynamic simulations of NLRP3 examined the active site of ADP- and ATP-bound models. The findings support distinctions in nucleotide-binding domain topology with occupancy of ATP or ADP that are in turn disseminated on to the global protein structure. -
Gasdermin D: the Long-Awaited Executioner of Pyroptosis Cell Research (2015) 25:1183-1184
Cell Research (2015) 25:1183-1184. npg © 2015 IBCB, SIBS, CAS All rights reserved 1001-0602/15 $ 32.00 RESEARCH HIGHLIGHT www.nature.com/cr Gasdermin D: the long-awaited executioner of pyroptosis Cell Research (2015) 25:1183-1184. doi:10.1038/cr.2015.124; published online 20 October 2015 Inflammatory caspases drive a screen for mutations that would impair cell membrane that mediates release of lytic form of cell death called pyropto- activation of the caspase-11-dependent matured IL-1β from the cell. sis in response to microbial infection pathway. Through this screen, the au- To further dissect how gasdermin and endogenous damage-associated thors found that peritoneal macrophages D might contribute to the caspase- signals. Two studies now demonstrate harvested from a mouse strain harboring 11-dependent pathway, both groups that cleavage of the substrate gas- a mutation in the gene encoding gasder- performed a series of biochemical as- dermin D by inflammatory caspases min D, called GsdmdI105N/I105N (owing to says to demonstrate that recombinant necessitates eventual pyroptotic de- an isoleucine-to-asparagine substitu- caspase-11 cleaved gasdermin D be- mise of a cell. tion mutation at position 105), did not tween the Asp276 and Gly277 residues Inflammatory caspases, including undergo pyroptosis and release IL-1β of mouse gasdermin D, generating an N- caspase-1, -4, -5 and -11, are crucial in response to LPS transfection. On the terminal (30-31-kDa) and a C-terminal mediators of inflammation and cell other hand, Shao and colleagues utilized fragment (22-kDa). Caspase-4 or -5 also death. -
Modulation of the Inflammatory Response After Spinal Cord Injury
ADVERTIMENT. Lʼaccés als continguts dʼaquesta tesi queda condicionat a lʼacceptació de les condicions dʼús establertes per la següent llicència Creative Commons: http://cat.creativecommons.org/?page_id=184 ADVERTENCIA. El acceso a los contenidos de esta tesis queda condicionado a la aceptación de las condiciones de uso establecidas por la siguiente licencia Creative Commons: http://es.creativecommons.org/blog/licencias/ WARNING. The access to the contents of this doctoral thesis it is limited to the acceptance of the use conditions set by the following Creative Commons license: https://creativecommons.org/licenses/?lang=en MODULATION OF THE INFLAMMATORY RESPONSE AFTER SPINAL CORD INJURY Presented by Jesús Amo Aparicio ACADEMIC DISSERTATION To obtain the degree of PhD in Neuroscience by the Universitat Autònoma de Barcelona 2019 Directed by Dr. Rubèn López Vales Tutorized by Dr. Xavier Navarro Acebes INDEX SUMMARY Page 7 INTRODUCTION Page 13 - Spinal cord Page 15 - Spinal cord injury Page 17 - Incidence and causes Page 18 - Types of SCI Page 18 - Biological events after SCI Page 20 - Studying SCI Page 24 - Animal models Page 24 - Lesion models Page 24 - Current therapies for SCI Page 25 - Basic principles of the immune system Page 27 - Innate immune response Page 27 - Adaptive immune response Page 28 - Inflammatory response Page 29 - Inflammatory response after SCI Page 30 - Modulation of injury environment Page 36 - Interleukin 1 Page 36 - Interleukin 37 Page 40 - Interleukin 13 Page 44 OBJECTIVES Page 47 MATERIALS AND METHODS Page 51 -
1 INVITED REVIEW Mechanisms of Gasdermin Family Members in Inflammasome Signaling and Cell Death Shouya Feng,* Daniel Fox,* Si M
INVITED REVIEW Mechanisms of Gasdermin family members in inflammasome signaling and cell death Shouya Feng,* Daniel Fox,* Si Ming Man Department of Immunology and Infectious Disease, The John Curtin School of Medical Research, The Australian National University, Canberra, Australia. * S.F. and D.F. equally contributed to this work Correspondence to Si Ming Man: Department of Immunology and Infectious Disease, The John Curtin School of Medical Research, The Australian National University, Canberra, 2601, Australia. [email protected] 1 Abstract The Gasdermin (GSDM) family consists of Gasdermin A (GSDMA), Gasdermin B (GSDMB), Gasdermin C (GSDMC), Gasdermin D (GSDMD), Gasdermin E (GSDME) and Pejvakin (PJVK). GSDMD is activated by inflammasome-associated inflammatory caspases. Cleavage of GSDMD by human or mouse caspase-1, human caspase-4, human caspase-5, and mouse caspase-11, liberates the N-terminal effector domain from the C-terminal inhibitory domain. The N-terminal domain oligomerizes in the cell membrane and forms a pore of 10-16 nm in diameter, through which substrates of a smaller diameter, such as interleukin (IL)-1β and IL- 18, are secreted. The increasing abundance of membrane pores ultimately leads to membrane rupture and pyroptosis, releasing the entire cellular content. Other than GSDMD, the N-terminal domain of all GSDMs, with the exception of PJVK, have the ability to form pores. There is evidence to suggest that GSDMB and GSDME are cleaved by apoptotic caspases. Here, we review the mechanistic functions of GSDM proteins with respect to their expression and signaling profile in the cell, with more focused discussions on inflammasome activation and cell death. -
E3 Ubiquitin Ligase SYVN1 Is a Key Positive Regulator for GSDMD
bioRxiv preprint doi: https://doi.org/10.1101/2021.07.21.453219; this version posted July 21, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 E3 ubiquitin ligase SYVN1 is a key positive regulator for 2 GSDMD-mediated pyroptosis 3 4 Yuhua Shi 1,2,#, Yang Yang3,#, Weilv Xu1,#, Wei Xu1, Xinyu Fu1, Qian Lv1, Jie Xia1, 5 Fushan Shi1,2,* 6 1 Department of Veterinary Medicine, College of Animal Sciences, Zhejiang 7 University, Hangzhou 310058, Zhejiang, PR China 8 2 Zhejiang Provincial Key Laboratory of Preventive Veterinary Medicine, Zhejiang 9 University, Hangzhou 310058, Zhejiang, PR China 10 3 Key Laboratory of Applied Technology on Green-Eco-Healthy Animal Husbandry of 11 Zhejiang Province, Zhejiang Provincial Engineering Laboratory for Animal Health 12 Inspection & Internet Technology, College of Animal Science and Technology & 13 College of Veterinary Medicine of Zhejiang A&F University, Hangzhou 311300, 14 Zhejiang, China 15 # These authors contributed equally to this work 16 *Corresponding author: Fushan Shi, E-mail: [email protected], Tel: 17 +086-0571-88982275 18 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.07.21.453219; this version posted July 21, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 19 Abstract 20 Gasdermin D (GSDMD) participates in activation of inflammasomes and pyroptosis. 21 Meanwhile, ubiquitination strictly regulates inflammatory responses. However, how 22 ubiquitination regulates Gasdermin D activity is not well understood. -
Charles A. Dinarello, MD
Acute Respiratory Distress Syndrome, NLRP3 and IL-1β Activation Induced by COVID-19 Grand Rounds Presentation by Charles A. Dinarello, MD 08 April 2020 Randy Cron:…” the cytokine storm keeps raging long after the virus is no longer a threat” What is a cytokine storm? Unusually high circulating levels of pro-inflammatory cytokines associated with organ damage Pharmacologic blockade or neutralization of specific cytokines can reduce organ damage, particularly when treatment is initiated early in the disease Therapeutic options to reduce the cytokine storm Blocking IL-1α and IL-1β with anakinra Blocking IL-6R with tocilizumab Blocking Upstream early with oral NLRP3 inhibitor The first reports from China established the cytokine storm in CVID-19 pneumonia Increased chemokines and IL-18 from PBMC, but not IL-6. IL-6 is from Epithelial cells. The authors concluded: One view of the evolving Cytokine Storm in COVID-19 infection adherence to endothelium Lung opening of endothelial junctions Lung Primary Infection Inflammation infiltration of damaging MDSC; cytokine production: IL-1β, IL- Virus infects type 2 6, IL-12, IL-18, TNFα, epithelial cells. Death of cells. chemokines Release of IL-1α processing of IL-1β and IL-18 and cell contents by the NLRP3 inflammasome IL-1α inducesViru chemokines and other cytokines from resident macrophages in the lungs. cytokine storm G-CSF and IL-1β enters β, circulation IL-6 (IL-1 TNFα, IL-8) G-CSF; IL-1β Liver IL-18I IL-12 + IL-18 hepatitis release of immature neutrophil and monocytes (MDSC) IFNγ IFNγ Bone marrow -
Mechanism of Gasdermin D Recognition by Inflammatory Caspases and Their Inhibition by a Gasdermin D-Derived Peptide Inhibitor
Mechanism of gasdermin D recognition by inflammatory caspases and their inhibition by a gasdermin D-derived peptide inhibitor Jie Yanga,b, Zhonghua Liua, Chuanping Wanga, Rui Yanga,c, Joseph K. Rathkeya, Otis W. Pinkarda, Wuxian Shid, Yinghua Chene, George R. Dubyaka,f, Derek W. Abbotta, and Tsan Sam Xiaoa,g,1 aDepartment of Pathology, Case Western Reserve University School of Medicine, Cleveland, OH 44106; bGraduate Program in Physiology and Biophysics, Department of Physiology and Biophysics, Case Western Reserve University School of Medicine, Cleveland, OH 44106; cDepartment of Biology, Case Western Reserve University, Cleveland, OH 44106; dCenter for Proteomics and Bioinformatics, Center for Synchrotron Biosciences, Case Western Reserve University School of Medicine, Cleveland, OH 44106; eProtein Expression Purification Crystallization and Molecular Biophysics Core, Department of Physiology and Biophysics, Case Western Reserve University School of Medicine, Cleveland, OH 44106; fDepartment of Physiology and Biophysics, Case Western Reserve University School of Medicine, Cleveland, OH 44106; and gCleveland Center for Membrane and Structural Biology, Case Western Reserve University School of Medicine, Cleveland, OH 44106 Edited by Hao Wu, Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, and approved May 22, 2018 (received for review January 10, 2018) The inflammasomes are signaling platforms that promote the response to intracellular bacterial infections (17–19). The caspase activation of inflammatory caspases such as caspases-1, -4, -5, and activation and recruitment domains (CARDs) of caspases-4, -5, -11. Recent studies identified gasdermin D (GSDMD) as an effector and -11 can directly bind to lipopolysaccharides (LPSs) and me- for pyroptosis downstream of the inflammasome signaling pathways. -
Pejvakin, a Candidate Stereociliary Rootlet Protein, Regulates Hair Cell Function in a Cell-Autonomous Manner
The Journal of Neuroscience, March 29, 2017 • 37(13):3447–3464 • 3447 Neurobiology of Disease Pejvakin, a Candidate Stereociliary Rootlet Protein, Regulates Hair Cell Function in a Cell-Autonomous Manner X Marcin Kazmierczak,1* Piotr Kazmierczak,2* XAnthony W. Peng,3,4 Suzan L. Harris,1 Prahar Shah,1 Jean-Luc Puel,2 Marc Lenoir,2 XSantos J. Franco,5 and Martin Schwander1 1Department of Cell Biology and Neuroscience, Rutgers the State University of New Jersey, Piscataway, New Jersey 08854, 2Inserm U1051, Institute for Neurosciences of Montpellier, 34091, Montpellier cedex 5, France, 3Department of Otolaryngology, Head and Neck Surgery, Stanford University, Stanford, California 94305, 4Department of Physiology and Biophysics, University of Colorado School of Medicine, Aurora, Colorado 80045, and 5Department of Pediatrics, University of Colorado School of Medicine, Aurora, Colorado 80045 Mutations in the Pejvakin (PJVK) gene are thought to cause auditory neuropathy and hearing loss of cochlear origin by affecting noise-inducedperoxisomeproliferationinauditoryhaircellsandneurons.Herewedemonstratethatlossofpejvakininhaircells,butnot in neurons, causes profound hearing loss and outer hair cell degeneration in mice. Pejvakin binds to and colocalizes with the rootlet component TRIOBP at the base of stereocilia in injectoporated hair cells, a pattern that is disrupted by deafness-associated PJVK mutations. Hair cells of pejvakin-deficient mice develop normal rootlets, but hair bundle morphology and mechanotransduction are affected before the onset of hearing. Some mechanotransducing shorter row stereocilia are missing, whereas the remaining ones exhibit overextended tips and a greater variability in height and width. Unlike previous studies of Pjvk alleles with neuronal dysfunction, our findings reveal a cell-autonomous role of pejvakin in maintaining stereocilia architecture that is critical for hair cell function.