Chec List Herpetofauna of Protected Areas in the Caatinga II: Serra Da
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Modeling and Partitioning the Nucleotide Evolutionary Process for Phylogenetic and Comparative Genomic Inference
University of Central Florida STARS Electronic Theses and Dissertations, 2004-2019 2007 Modeling And Partitioning The Nucleotide Evolutionary Process For Phylogenetic And Comparative Genomic Inference Todd Castoe University of Central Florida Part of the Biology Commons Find similar works at: https://stars.library.ucf.edu/etd University of Central Florida Libraries http://library.ucf.edu This Doctoral Dissertation (Open Access) is brought to you for free and open access by STARS. It has been accepted for inclusion in Electronic Theses and Dissertations, 2004-2019 by an authorized administrator of STARS. For more information, please contact [email protected]. STARS Citation Castoe, Todd, "Modeling And Partitioning The Nucleotide Evolutionary Process For Phylogenetic And Comparative Genomic Inference" (2007). Electronic Theses and Dissertations, 2004-2019. 3111. https://stars.library.ucf.edu/etd/3111 MODELING AND PARTITIONING THE NUCLEOTIDE EVOLUTIONARY PROCESS FOR PHYLOGENETIC AND COMPARATIVE GENOMIC INFERENCE by TODD A. CASTOE B.S. SUNY – College of Environmental Science and Forestry, 1999 M.S. The University of Texas at Arlington, 2001 A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biomolecular Sciences in the Burnett College of Biomedical Sciences at the University of Central Florida Orlando, Florida Spring Term 2007 Major Professor: Christopher L. Parkinson © 2007 Todd A. Castoe ii ABSTRACT The transformation of genomic data into functionally relevant information about the composition of biological systems hinges critically on the field of computational genome biology, at the core of which lies comparative genomics. The aim of comparative genomics is to extract meaningful functional information from the differences and similarities observed across genomes of different organisms. -
Zootaxa, a New Genus and Species of Eyelid-Less And
Zootaxa 1873: 50–60 (2008) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2008 · Magnolia Press ISSN 1175-5334 (online edition) A new genus and species of eyelid-less and limb reduced gymnophthalmid lizard from northeastern Brazil (Squamata, Gymnophthalmidae) MIGUEL TREFAUT RODRIGUES1 & EDNILZA MARANHÃO DOS SANTOS2 1Universidade de São Paulo, Instituto de Biociências, Departamento de Zoologia, Caixa Postal 11.461, CEP 05422-970, São Paulo, Brazil. E-mail: [email protected] 2Universidade Federal Rural de Pernambuco, Unidade Acadêmica de Serra Talhada, Departamento de Biologia, Fazenda Saco, s/n, Serra Talhada, Pernambuco, Brazil. E-mail: [email protected] Abstract Scriptosaura catimbau, a new genus and species of elongate, fossorial, sand swimming eyelid-less gymnophthalmid li- zard is described on the basis of specimens obtained at Fazenda Porto Seguro, municipality of Buíque, State of Pernam- buco, in the Caatingas of northeastern Brazil. The type locality is entirely included within the area of the recently created Parque Nacional do Catimbau. The new lizard lacks external forelimbs, has rudimentary styliform hindlimbs and is fur- ther characterized by the absence of prefrontal, frontal, frontoparietal and supraocular scales, and by having one pair of chin shields. A member of the Gymnophthalmini radiation, the new genus is considered to be sister to Calyptommatus from which it differs externally by the absence of an ocular scale and absence of an enlarged temporal scale. Key words: Scriptosaura catimbau, new genus, Gymnophthalmidae, taxonomy, Catimbau Nacional Park, Pernambuco State, Brazil, Caatingas Resumo Scriptosaura catimbau, um novo gênero e espécie arenícola de lagarto gimnoftalmídeo fossorial com corpo alongado e sem pálpebra é descrito com base em espécimes obtidos na Fazenda Porto Seguro, município de Buíque, estado de Per- nambuco, nas Caatingas do nordeste brasileiro. -
Predation on Ameiva Ameiva (Squamata: Teiidae) by Ardea Alba (Pelecaniformes: Ardeidae) in the Southwestern Brazilian Amazon
Herpetology Notes, volume 14: 1073-1075 (2021) (published online on 10 August 2021) Predation on Ameiva ameiva (Squamata: Teiidae) by Ardea alba (Pelecaniformes: Ardeidae) in the southwestern Brazilian Amazon Raul A. Pommer-Barbosa1,*, Alisson M. Albino2, Jessica F.T. Reis3, and Saara N. Fialho4 Lizards and frogs are eaten by a wide range of wetlands, being found mainly in lakes, wetlands, predators and are a food source for many bird species flooded areas, rivers, dams, mangroves, swamps, in neotropical forests (Poulin et al., 2001). However, and the shallow waters of salt lakes. It is a species predation events are poorly observed in nature and of diurnal feeding habits, but its activity peak occurs hardly documented (e.g., Malkmus, 2000; Aguiar and either at dawn or dusk. This characteristic changes Di-Bernardo, 2004; Silva et al., 2021). Such records in coastal environments, where its feeding habit is are certainly very rare for the teiid lizard Ameiva linked to the tides (McCrimmon et al., 2020). Its diet ameiva (Linnaeus, 1758) (Maffei et al., 2007). is varied and may include amphibians, snakes, insects, Found in most parts of Brazil, A. ameiva is commonly fish, aquatic larvae, mollusks, small crustaceans, small known as Amazon Racerunner or Giant Ameiva, and birds, small mammals, and lizards (Martínez-Vilalta, it has one of the widest geographical distributions 1992; Miranda and Collazo, 1997; Figueroa and among neotropical lizards. It occurs in open areas all Corales Stappung, 2003; Kushlan and Hancock 2005). over South America, the Galapagos Islands (Vanzolini We here report a predation event on the Ameiva ameiva et al., 1980), Panama, and several Caribbean islands by Ardea alba in the southwestern Brazilian Amazon. -
Brachydactyly in the Toad Rhinella Granulosa (Bufonidae) from the Caatinga of Brazil: a Rare Case with All Limbs Affected
Herpetology Notes, volume 11: 445-448 (2018) (published online on 24 May 2018) Brachydactyly in the toad Rhinella granulosa (Bufonidae) from the Caatinga of Brazil: a rare case with all limbs affected Larissa L. Correia1,2, João P. F. A. Almeida1, Barnagleison S. Lisboa3 and Filipe A. C. Nascimento3,4,* Amphibians are unique among tetrapods due to toads and frogs (e.g. Flyaks and Borkin, 2003; Guerra their biphasic life cycle and permeable skin. These and Aráoz, 2016; Silva-Soares and Mônico, 2017). features make them sensitive to potentially dangerous While conducting a survey of Rhinella granulosa exogenous factors that can affect their development (Spix, 1824) specimens deposited in the herpetological and generate body malformations. However, some collection of the Museu de História Natural of the endogenous factors, such as gene mutations, can also Universidade Federal de Alagoas, we found a specimen be the cause of some malformations (e.g. Droin et (MUFAL 8138) with bilateral brachydactyly on the fore- al., 1970; Droin, 1992). Although common in natural and hindlimbs. We used x-ray photographs taken using populations reaching a prevalence rate of 2–5% (Lunde a dental x-ray machine Dabi Atlante Spectro II in order and Johnson, 2012), these abnormalities might affect to confirm the malformation and verify the limb bone individual fitness and thus contribute to the reduction of arrangement. Specimen identification was confirmed amphibian populations (Johnson et al., 2003). based on the diagnosis of Narvaes and Rodrigues (2009), Most cases of malformations in amphibians affect the which reviewed the taxonomy of Rhinella granulosa appendicular skeleton, mainly the bones of the limbs species group. -
Students' Attitudes Toward and Knowledge About Snakes in The
Alves et al. Journal of Ethnobiology and Ethnomedicine 2014, 10:30 http://www.ethnobiomed.com/content/10/1/30 JOURNAL OF ETHNOBIOLOGY AND ETHNOMEDICINE RESEARCH Open Access Students’ attitudes toward and knowledge about snakes in the semiarid region of Northeastern Brazil Rômulo RN Alves1*, Vanessa N Silva1, Dilma MBM Trovão1, José V Oliveira1, José S Mourão1, Thelma LP Dias1, Ângelo GC Alves2, Reinaldo FP Lucena3, Raynner RD Barboza4, Paulo FGP Montenegro4, Washington LS Vieira4 and Wedson MS Souto4 Abstract Background: Humans in various cultures have feared snakes, provoking an aversion and persecution that hinders conservation efforts for these reptiles. Such fact suggests that conservation strategies for snakes should consider the interactions and perceptions of the local population towards these animals. The aim of this study was to investigate students' perception of snakes and if attitudes and knowledge may differ according to gender and local residence (urban or rural). Methods: Data was collected in the second half of 2012 and consisted of questionnaires applied to 108 students in the Basic Education School in the municipality of Sumé, located in the semiarid region of Northeastern Brazil. Results: The male respondents recognized more species than female did. Part of the students affirmed to have a fear of snakes, especially women. Nearly half of respondents (49%) showed negative behaviour towards these animals, reflecting the influence of potential risk and myths associated with snakes, and supported by a limited knowledge about these animals and their ecological and utilitarian role. We find that the rural students recognized significantly more species than the urban students. Conclusions: Our results point to the need for educational interventions in order to increase knowledge about the positive aspects associated with snakes, seeking to minimize the influence of myths and beliefs that contribute to a strong aversion to snakes by the locals. -
De Los Reptiles Del Yasuní
guía dinámica de los reptiles del yasuní omar torres coordinador editorial Lista de especies Número de especies: 113 Amphisbaenia Amphisbaenidae Amphisbaena bassleri, Culebras ciegas Squamata: Serpentes Boidae Boa constrictor, Boas matacaballo Corallus hortulanus, Boas de los jardines Epicrates cenchria, Boas arcoiris Eunectes murinus, Anacondas Colubridae: Dipsadinae Atractus major, Culebras tierreras cafés Atractus collaris, Culebras tierreras de collares Atractus elaps, Falsas corales tierreras Atractus occipitoalbus, Culebras tierreras grises Atractus snethlageae, Culebras tierreras Clelia clelia, Chontas Dipsas catesbyi, Culebras caracoleras de Catesby Dipsas indica, Culebras caracoleras neotropicales Drepanoides anomalus, Culebras hoz Erythrolamprus reginae, Culebras terrestres reales Erythrolamprus typhlus, Culebras terrestres ciegas Erythrolamprus guentheri, Falsas corales de nuca rosa Helicops angulatus, Culebras de agua anguladas Helicops pastazae, Culebras de agua de Pastaza Helicops leopardinus, Culebras de agua leopardo Helicops petersi, Culebras de agua de Peters Hydrops triangularis, Culebras de agua triángulo Hydrops martii, Culebras de agua amazónicas Imantodes lentiferus, Cordoncillos del Amazonas Imantodes cenchoa, Cordoncillos comunes Leptodeira annulata, Serpientes ojos de gato anilladas Oxyrhopus petolarius, Falsas corales amazónicas Oxyrhopus melanogenys, Falsas corales oscuras Oxyrhopus vanidicus, Falsas corales Philodryas argentea, Serpientes liana verdes de banda plateada Philodryas viridissima, Serpientes corredoras -
Different Environmental Gradients Affect Different Measures of Snake Β-Diversity in the Amazon Rainforests
Different environmental gradients affect different measures of snake β-diversity in the Amazon rainforests Rafael de Fraga1,2,3, Miquéias Ferrão1, Adam J. Stow2, William E. Magnusson4 and Albertina P. Lima4 1 Programa de Pós-Graduação em Ecologia, Instituto Nacional de Pesquisas da Amazônia, Manaus, Amazonas, Brazil 2 Department of Biological Sciences, Macquarie University, Sydney, NSW, Australia 3 Programa de Pós-graduação em Sociedade, Natureza e Desenvolvimento, Universidade Federal do Oeste do Pará, Santarém, Pará, Brazil 4 Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Manaus, Amazonas, Brazil ABSTRACT Mechanisms generating and maintaining biodiversity at regional scales may be evaluated by quantifying β-diversity along environmental gradients. Differences in assemblages result in biotic complementarities and redundancies among sites, which may be quantified through multi-dimensional approaches incorporating taxonomic β-diversity (TBD), functional β-diversity (FBD) and phylogenetic β-diversity (PBD). Here we test the hypothesis that snake TBD, FBD and PBD are influenced by environmental gradients, independently of geographic distance. The gradients tested are expected to affect snake assemblages indirectly, such as clay content in the soil determining primary production and height above the nearest drainage determining prey availability, or directly, such as percentage of tree cover determining availability of resting and nesting sites, and climate (temperature and precipitation) causing physiological filtering. We sampled snakes in 21 sampling plots, each covering five km2, distributed over 880 km in the central-southern Amazon Basin. We used dissimilarities between sampling sites to quantify TBD, FBD and PBD, Submitted 30 April 2018 which were response variables in multiple-linear-regression and redundancy analysis Accepted 23 August 2018 Published 24 September 2018 models. -
Pentastomid Infection in Philodryas Nattereri Steindachner, 1870 and Oxybelis Aeneus (Wagler, 1824) (Squamata: Colubridae) in A
Pentastomid infection in Philodryas nattereri Steindachner, 1870 and Oxybelis aeneus (Wagler, 1824) (Squamata: Colubridae) in a caatinga of northeastern Brazil Almeida, WO.a*, Guedes, TB.b, Freire, EMX.b and Vasconcellos, A.b aDepartamento de Ciências Físicas e Biológicas, Universidade Regional do Cariri, R. Cel. Antônio Luiz, 1161, CEP 63105-000, Crato, CE, Brasil bDepartamento de Botânica, Centro de Biociências, Ecologia e Zoologia, Universidade Federal do Rio Grande do Norte – UFRN, Natal, RN, Brasil *e-mail: [email protected] Received May 5, 2006 – Accepted July 4, 2006 – Distributed February 29, 2008 (With 2 figures) Abstract The relationship between pentastomids and two Colubridae species, Phillodryas nattereri Steindachner, 1870 and Oxybelis aeneus (Wagler, 1824), were investigated in the federal government’s reserve Estação Ecológica do Seridó (ESEC, Seridó) situated at lat 6° 35’-40’ S and long 37° 15’-20 W in the municipality of Serra Negra do Norte, state of Rio Grande do Norte, Northeast Brazil and run by IBAMA (the Brazilian Institute for the Environment and Natural Resources). Throughout 2005, 26 specimens of snakes, 13 of P. nattereri and 13 of O. aeneus were collected. After anatomical dissection and laboratorial examination of the snakes’ respiratory tracts, P. nattereri was found to be parasitized by two species of pentas- tomids: Cephalobaena tetrapoda Heymons, 1922 with a prevalence of 30.8% and a mean intensity of infection of 51.5 ± 32.7 (range 3-147), and Raillietiella furcocerca (Diesing, 1863) which had a prevalence of 7.7% and a mean intensity of infection of 1.0. Only one female of O. aeneus was found to be infected by C. -
Helminths from Lizards (Reptilia: Squamata) at the Cerrado of Goiás State, Brazil Author(S): Robson W
Helminths from Lizards (Reptilia: Squamata) at the Cerrado of Goiás State, Brazil Author(s): Robson W. Ávila, Manoela W. Cardoso, Fabrício H. Oda, and Reinaldo J. da Silva Source: Comparative Parasitology, 78(1):120-128. 2011. Published By: The Helminthological Society of Washington DOI: 10.1654/4472.1 URL: http://www.bioone.org/doi/full/10.1654/4472.1 BioOne (www.bioone.org) is an electronic aggregator of bioscience research content, and the online home to over 160 journals and books published by not-for-profit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Web site, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/page/terms_of_use. Usage of BioOne content is strictly limited to personal, educational, and non-commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. Comp. Parasitol. 78(1), 2011, pp. 120–128 Helminths from Lizards (Reptilia: Squamata) at the Cerrado of Goia´s State, Brazil 1,4 2 3 1 ROBSON W. A´ VILA, MANOELA W. CARDOSO, FABRI´CIO H. ODA, AND REINALDO J. DA SILVA 1 Departamento de Parasitologia, Instituto de Biocieˆncias, UNESP, Distrito de Rubia˜o Jr., CEP 18618-000, Botucatu, SP, Brazil, 2 Departamento de Vertebrados, Museu Nacional, Universidade Federal do Rio de Janeiro, Quinta da Boa Vista, CEP 20940- 040, Rio de Janeiro, RJ, Brazil, and 3 Universidade Federal de Goia´s–UFG, Laborato´rio de Comportamento Animal, Instituto de Cieˆncias Biolo´gicas, Campus Samambaia, Conjunto Itatiaia, CEP 74000-970. -
História Das Paisagens Florestais Mésicas Dentro Da Diagonal De Formações Abertas: Contribuições De Paleomodelagem, Filoge
! ! Universidade de Brasília Instituto de Ciências Biológicas Programa de Pós-Graduação em Ecologia História das paisagens florestais mésicas dentro da diagonal de formações abertas: contribuições de paleomodelagem, filogeografia de espécies associadas e de conservação Roger Maia Dias Ledo Brasília – DF 2016 ! ! ! ! Universidade de Brasília Instituto de Ciências Biológicas Programa de Pós-Graduação em Ecologia História das paisagens florestais mésicas dentro da diagonal de formações abertas: contribuições de paleomodelagem, filogeografia de espécies associadas e de conservação Orientador: Dr. Guarino Rinaldi Colli Co-orientadora: Dra. Lilian G. Giugliano Tese apresentada ao Programa de Pós- Graduação em Ecologia da Universidade de Brasília como parte dos requisitos necessários para a obtenção do título de Doutor em Ecologia. Brasília – DF 2016 ! ! Roger Maia Dias Ledo História das paisagens florestais mésicas dentro da diagonal de formações abertas: contribuições de paleomodelagem, filogeografia de espécies associadas e conservação Tese realizada com o apoio da Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES/SISBIOTA) e aprovada junto ao Programa de Pós-Graduação em Ecologia da Universidade de Brasília como requisito para obtenção do título de Doutor em Ecologia. Comissão Examinadora: Prof. Dr. Guarino R. Colli Prof. Dra. Lilian G. Giugliano Presidente/Orientador Co-orientadora UnB UnB Profa. Dra. Leonora P. Costa Prof. Dr. Adrian A. Garda Membro Externo não vinculado ao Programa Membro Externo não vinculado ao Programa UFES UFRN Prof. Dra. Rosane Collevatti Membro Prof. Dr. Ricardo Bomfim Machado Externo não vinculado ao Programa Membro Interno vinculado ao UFG Programa UnB Prof. Dr. Renato Caparroz Membro suplente vinculado ao Programa UnB Brasília, 29 de fevereiro de 2016 ! ! Agradecimentos Esta tese não sairia do papel (ou melhor, não se materializaria no papel) se não fosse a ajuda de inúmeras pessoas. -
Natural History of the Tropical Gecko Phyllopezus Pollicaris (Squamata, Phyllodactylidae) from a Sandstone Outcrop in Central Brazil
Herpetology Notes, volume 5: 49-58 (2012) (published online on 18 March 2012) Natural history of the tropical gecko Phyllopezus pollicaris (Squamata, Phyllodactylidae) from a sandstone outcrop in Central Brazil. Renato Recoder1*, Mauro Teixeira Junior1, Agustín Camacho1 and Miguel Trefaut Rodrigues1 Abstract. Natural history aspects of the Neotropical gecko Phyllopezus pollicaris were studied at Estação Ecológica Serra Geral do Tocantins, in the Cerrado region of Central Brazil. Despite initial prospection at different types of habitats, all individuals were collected at sandstone outcrops within savannahs. Most individuals were observed at night, but several specimens were found active during daytime. Body temperatures were significantly higher in day-active individuals. We did not detect sexual dimorphism in size, shape, weight, or body condition. All adult males were reproductively mature, in contrast to just two adult females (11%), one of which contained two oviductal eggs. Dietary data indicates that P. pollicaris feeds upon a variety of arthropods. Dietary overlap between sexes and age classes was moderate to high. The rate of caudal autotomy varied between age classes but not between sexes. Our data, the first for a population ofP. pollicaris from a savannah habitat, are in overall agreement with observations made in populations from Caatinga and Dry Forest, except for microhabitat use and reproductive cycle. Keywords. Cerrado, lizard, local variation, niche breadth, thermal ecology, sexual dimorphism, tail autotomy. Introduction information about aspects of the natural history (habitat Phyllopezus pollicaris (Spix, 1825) is a large-sized, use, morphology, diet, temperatures, reproductive nocturnal and insectivorous gecko native to central condition and caudal autotomy) of a population of South America (Rodrigues, 1986; Vanzolini, Costa P. -
On the Geographical Differentiation of Gymnodactylus Geckoides Spix, 1825 (Sauria, Gekkonidae): Speciation in the Brasilian Caatingas
Anais da Academia Brasileira de Ciências (2004) 76(4): 663-698 (Annals of the Brazilian Academy of Sciences) ISSN 0001-3765 www.scielo.br/aabc On the geographical differentiation of Gymnodactylus geckoides Spix, 1825 (Sauria, Gekkonidae): speciation in the Brasilian caatingas PAULO EMILIO VANZOLINI* Museu de Zoologia da Universidade de São Paulo, Cx. Postal 42694, 04299-970 São Paulo, SP, Brasil Manuscript received on October 31, 2003; accepted for publication on April 4, 2004. ABSTRACT The specific concept of G. geckoides was initially ascertained based on a topotypical sample from Salvador, Bahia. Geographic differentiation was studied through the analysis of two meristic characters (tubercles in a paramedian row and fourth toe lamellae) and color pattern of 327 specimens from 23 localities. It is shown that the population from the southernmost locality, Mucugê, is markedly divergent in all characters studied. A Holocene refuge model is proposed to explain the pattern. A decision about the rank to be attributed to the Mucugê population is deferred until more detailed sampling is effected and molecular methods are applied. Key words: speciation, Holocene refuges, lizards: ecology, lizards: systematics. INTRODUCTION Both the description and the figure are very good. The Gymnodactylus geckoides complex has one of The type locality, environs of the city of Bahia (the the most interesting distributions of all cis-Andean present Salvador), is satisfactorily explicit, and the lizards. It occurs in such diversified areas as the animal is still fairly common there. semi-arid caatingas of northeastern Brazil, the Cen- Fitzinger (1826: 48), in a rather confused note tral Brazilian cerrados, which are mesic open forma- on gekkonid systematics, placed geckoides in his tions, and the humid Atlantic coast.