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CHECKLIST and BIOGEOGRAPHY of FISHES from GUADALUPE ISLAND, WESTERN MEXICO Héctor Reyes-Bonilla, Arturo Ayala-Bocos, Luis E
ReyeS-BONIllA eT Al: CheCklIST AND BIOgeOgRAphy Of fISheS fROm gUADAlUpe ISlAND CalCOfI Rep., Vol. 51, 2010 CHECKLIST AND BIOGEOGRAPHY OF FISHES FROM GUADALUPE ISLAND, WESTERN MEXICO Héctor REyES-BONILLA, Arturo AyALA-BOCOS, LUIS E. Calderon-AGUILERA SAúL GONzáLEz-Romero, ISRAEL SáNCHEz-ALCántara Centro de Investigación Científica y de Educación Superior de Ensenada AND MARIANA Walther MENDOzA Carretera Tijuana - Ensenada # 3918, zona Playitas, C.P. 22860 Universidad Autónoma de Baja California Sur Ensenada, B.C., México Departamento de Biología Marina Tel: +52 646 1750500, ext. 25257; Fax: +52 646 Apartado postal 19-B, CP 23080 [email protected] La Paz, B.C.S., México. Tel: (612) 123-8800, ext. 4160; Fax: (612) 123-8819 NADIA C. Olivares-BAñUELOS [email protected] Reserva de la Biosfera Isla Guadalupe Comisión Nacional de áreas Naturales Protegidas yULIANA R. BEDOLLA-GUzMáN AND Avenida del Puerto 375, local 30 Arturo RAMíREz-VALDEz Fraccionamiento Playas de Ensenada, C.P. 22880 Universidad Autónoma de Baja California Ensenada, B.C., México Facultad de Ciencias Marinas, Instituto de Investigaciones Oceanológicas Universidad Autónoma de Baja California, Carr. Tijuana-Ensenada km. 107, Apartado postal 453, C.P. 22890 Ensenada, B.C., México ABSTRACT recognized the biological and ecological significance of Guadalupe Island, off Baja California, México, is Guadalupe Island, and declared it a Biosphere Reserve an important fishing area which also harbors high (SEMARNAT 2005). marine biodiversity. Based on field data, literature Guadalupe Island is isolated, far away from the main- reviews, and scientific collection records, we pres- land and has limited logistic facilities to conduct scien- ent a comprehensive checklist of the local fish fauna, tific studies. -
1 Exon Probe Sets and Bioinformatics Pipelines for All Levels of Fish Phylogenomics
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.18.949735; this version posted February 19, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics 2 3 Lily C. Hughes1,2,3,*, Guillermo Ortí1,3, Hadeel Saad1, Chenhong Li4, William T. White5, Carole 4 C. Baldwin3, Keith A. Crandall1,2, Dahiana Arcila3,6,7, and Ricardo Betancur-R.7 5 6 1 Department of Biological Sciences, George Washington University, Washington, D.C., U.S.A. 7 2 Computational Biology Institute, Milken Institute of Public Health, George Washington 8 University, Washington, D.C., U.S.A. 9 3 Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian 10 Institution, Washington, D.C., U.S.A. 11 4 College of Fisheries and Life Sciences, Shanghai Ocean University, Shanghai, China 12 5 CSIRO Australian National Fish Collection, National Research Collections of Australia, 13 Hobart, TAS, Australia 14 6 Sam Noble Oklahoma Museum of Natural History, Norman, O.K., U.S.A. 15 7 Department of Biology, University of Oklahoma, Norman, O.K., U.S.A. 16 17 *Corresponding author: Lily C. Hughes, [email protected]. 18 Current address: Department of Organismal Biology and Anatomy, University of Chicago, 19 Chicago, IL. 20 21 Keywords: Actinopterygii, Protein coding, Systematics, Phylogenetics, Evolution, Target 22 capture 23 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.02.18.949735; this version posted February 19, 2020. -
Early Stages of Fishes in the Western North Atlantic Ocean Volume
ISBN 0-9689167-4-x Early Stages of Fishes in the Western North Atlantic Ocean (Davis Strait, Southern Greenland and Flemish Cap to Cape Hatteras) Volume One Acipenseriformes through Syngnathiformes Michael P. Fahay ii Early Stages of Fishes in the Western North Atlantic Ocean iii Dedication This monograph is dedicated to those highly skilled larval fish illustrators whose talents and efforts have greatly facilitated the study of fish ontogeny. The works of many of those fine illustrators grace these pages. iv Early Stages of Fishes in the Western North Atlantic Ocean v Preface The contents of this monograph are a revision and update of an earlier atlas describing the eggs and larvae of western Atlantic marine fishes occurring between the Scotian Shelf and Cape Hatteras, North Carolina (Fahay, 1983). The three-fold increase in the total num- ber of species covered in the current compilation is the result of both a larger study area and a recent increase in published ontogenetic studies of fishes by many authors and students of the morphology of early stages of marine fishes. It is a tribute to the efforts of those authors that the ontogeny of greater than 70% of species known from the western North Atlantic Ocean is now well described. Michael Fahay 241 Sabino Road West Bath, Maine 04530 U.S.A. vi Acknowledgements I greatly appreciate the help provided by a number of very knowledgeable friends and colleagues dur- ing the preparation of this monograph. Jon Hare undertook a painstakingly critical review of the entire monograph, corrected omissions, inconsistencies, and errors of fact, and made suggestions which markedly improved its organization and presentation. -
Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. -
Order MYCTOPHIFORMES NEOSCOPELIDAE Horizontal Rows
click for previous page 942 Bony Fishes Order MYCTOPHIFORMES NEOSCOPELIDAE Neoscopelids By K.E. Hartel, Harvard University, Massachusetts, USA and J.E. Craddock, Woods Hole Oceanographic Institution, Massachusetts, USA iagnostic characters: Small fishes, usually 15 to 30 cm as adults. Body elongate with no photophores D(Scopelengys) or with 3 rows of large photophores when viewed from below (Neoscopelus).Eyes variable, small to large. Mouth large, extending to or beyond vertical from posterior margin of eye; tongue with photophores around margin in Neoscopelus. Gill rakers 9 to 16. Dorsal fin single, its origin above or slightly in front of pelvic fin, well in front of anal fins; 11 to 13 soft rays. Dorsal adipose fin over end of anal fin. Anal-fin origin well behind dorsal-fin base, anal fin with 10 to 14 soft rays. Pectoral fins long, reaching to about anus, anal fin with 15 to 19 rays.Pelvic fins large, usually reaching to anus.Scales large, cycloid, and de- ciduous. Colour: reddish silvery in Neoscopelus; blackish in Scopelengys. dorsal adipose fin anal-fin origin well behind dorsal-fin base Habitat, biology, and fisheries: Large adults of Neoscopelus usually benthopelagic below 1 000 m, but subadults mostly in midwater between 500 and 1 000 m in tropical and subtropical areas. Scopelengys meso- to bathypelagic. No known fisheries. Remarks: Three genera and 5 species with Solivomer not known from the Atlantic. All Atlantic species probably circumglobal . Similar families in occurring in area Myctophidae: photophores arranged in groups not in straight horizontal rows (except Taaningichthys paurolychnus which lacks photophores). Anal-fin origin under posterior dorsal-fin anal-fin base. -
Wainwright-Et-Al.-2012.Pdf
Copyedited by: ES MANUSCRIPT CATEGORY: Article Syst. Biol. 61(6):1001–1027, 2012 © The Author(s) 2012. Published by Oxford University Press, on behalf of the Society of Systematic Biologists. All rights reserved. For Permissions, please email: [email protected] DOI:10.1093/sysbio/sys060 Advance Access publication on June 27, 2012 The Evolution of Pharyngognathy: A Phylogenetic and Functional Appraisal of the Pharyngeal Jaw Key Innovation in Labroid Fishes and Beyond ,∗ PETER C. WAINWRIGHT1 ,W.LEO SMITH2,SAMANTHA A. PRICE1,KEVIN L. TANG3,JOHN S. SPARKS4,LARA A. FERRY5, , KRISTEN L. KUHN6 7,RON I. EYTAN6, AND THOMAS J. NEAR6 1Department of Evolution and Ecology, University of California, One Shields Avenue, Davis, CA 95616; 2Department of Zoology, Field Museum of Natural History, 1400 South Lake Shore Drive, Chicago, IL 60605; 3Department of Biology, University of Michigan-Flint, Flint, MI 48502; 4Department of Ichthyology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024; 5Division of Mathematical and Natural Sciences, Arizona State University, Phoenix, AZ 85069; 6Department of Ecology and Evolution, Peabody Museum of Natural History, Yale University, New Haven, CT 06520; and 7USDA-ARS, Beneficial Insects Introduction Research Unit, 501 South Chapel Street, Newark, DE 19713, USA; ∗ Correspondence to be sent to: Department of Evolution & Ecology, University of California, One Shields Avenue, Davis, CA 95616, USA; E-mail: [email protected]. Received 22 September 2011; reviews returned 30 November 2011; accepted 22 June 2012 Associate Editor: Luke Harmon Abstract.—The perciform group Labroidei includes approximately 2600 species and comprises some of the most diverse and successful lineages of teleost fishes. -
Opistognathidae
FAMILY Opistognathidae Bonaparte 1835 - jawfishes GENUS Anoptoplacus Smith-Vaniz, 2017 - jawfishes Species Anoptoplacus pygmaeus Smith-Vaniz, 2017 - pygmy jawfish GENUS Lonchopisthus Gill, 1862 - jawfishes [=Lonchistium] Species Lonchopisthus ancistrus Smith-Vaniz & Walsh, 2017 - ancistrus jawfish Species Lonchopisthus higmani Mead, 1959 - Mead's jawfish Species Lonchopisthus lemur (Myers, 1935) - lemur jawfish [=meadi] Species Lonchopisthus micrognathus (Poey, 1860) - swordtail jawfish [=lindneri, vanderbilti] Species Lonchopisthus sinuscalifornicus Castro-Aguirre & Villavicencio-Garayzar, 1988 - longtailed jawfish GENUS Opistognathus Cuvier, 1816 - jawfishes [=Gnathypops, Merogymnoides, Merogymnus, Tandya, Upsilonognathus] Species Opistognathus adelus Smith-Vaniz, 2010 - obscure jawfish Species Opistognathus afer Smith-Vaniz, 2010 - African jawfish Species Opistognathus albicaudatus Smith-Vaniz, 2011 - whitetail jawfish Species Opistognathus alleni Smith-Vaniz, 2004 - Abrolhos jawfish Species Opistognathus annulatus (Eibl-Eibesfeldt & Klausewitz, 1961) - annulatus jawfish Species Opistognathus aurifrons (Jordan & Thompson, 1905) - yellowhead jawfish Species Opistognathus brasiliensis Smith-Vaniz, 1997 - darkfin jawfish Species Opistognathus brochus Bussing & Lavenberg, 2003 - brochus jawfish Species Opistognathus castelnaui Bleeker, 1859 - Castelnau's jawfish [=suluensis] Species Opistognathus crassus Smith-Vaniz, 2010 - stout jawfish Species Opistognathus cuvierii Valenciennes, in Cuvier & Valenciennes, 1836 - bartail jawfish Species -
Euteleostei: Aulopiformes) and the Timing of Deep-Sea Adaptations ⇑ Matthew P
Molecular Phylogenetics and Evolution 57 (2010) 1194–1208 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Estimating divergence times of lizardfishes and their allies (Euteleostei: Aulopiformes) and the timing of deep-sea adaptations ⇑ Matthew P. Davis a, , Christopher Fielitz b a Museum of Natural Science, Louisiana State University, 119 Foster Hall, Baton Rouge, LA 70803, USA b Department of Biology, Emory & Henry College, Emory, VA 24327, USA article info abstract Article history: The divergence times of lizardfishes (Euteleostei: Aulopiformes) are estimated utilizing a Bayesian Received 18 May 2010 approach in combination with knowledge of the fossil record of teleosts and a taxonomic review of fossil Revised 1 September 2010 aulopiform taxa. These results are integrated with a study of character evolution regarding deep-sea evo- Accepted 7 September 2010 lutionary adaptations in the clade, including simultaneous hermaphroditism and tubular eyes. Diver- Available online 18 September 2010 gence time estimations recover that the stem species of the lizardfishes arose during the Early Cretaceous/Late Jurassic in a marine environment with separate sexes, and laterally directed, round eyes. Keywords: Tubular eyes have arisen independently at different times in three deep-sea pelagic predatory aulopiform Phylogenetics lineages. Simultaneous hermaphroditism evolved a single time in the stem species of the suborder Character evolution Deep-sea Alepisauroidei, the clade of deep-sea aulopiforms during the Early Cretaceous. This result indicates the Euteleostei oldest known evolutionary event of simultaneous hermaphroditism in vertebrates, with the Alepisauroidei Hermaphroditism being the largest vertebrate clade with this reproductive strategy. Divergence times Ó 2010 Elsevier Inc. -
A Review of Lanternfishes (Families: Myctophidae and Neoscopelidae)
Zoological Studies 40(2): 103-126 (2001) A Review of Lanternfishes (Families: Myctophidae and Neoscopelidae) and Their Distributions around Taiwan and the Tungsha Islands with Notes on Seventeen New Records John Ta-Ming Wang* and Che-Tsung Chen Graduate School of Fisheries Science, National Taiwan Ocean University, Keelung, Taiwan 202, R.O.C. Fax: 886-2-28106688. E-mail: [email protected] (Accepted December 20, 2000) John Ta-Ming Wang and Che-Tsung Chen (2001) A review of lanternfishes (Families: Myctophidae and Neoscopelidae) and their distributions around Taiwan and the Tungsha Islands with notes on seventeen new records. Zoological Studies 40(2): 103-126. Lanternfishes collected during 9 cruises from 1991 to 1997 were studied. The area sampled lies between 19°N and 25°N and 114°E and 123°E. The specimens collected in this area comprise 40 species belong to 16 genera, among which 17 species are first records. These first record species include Benthosema fibulatum, Bolinichthys supralateralis, Electrona risso, Hygophum proximum, H. reinhardtii, Lampadena anomala, Lobianchia gemellarii, Lampanyctus niger, L. turneri, L. tenuiformis, Myctophum asperum, M. aurolaternatum, M. nitidulum, M. spinosum, Notolychnus valdiviae, Notoscopelus caudispinosus, and N. resplendens. Among these, six species, Bolinichthys supralateralis, Electrona risso, Lampanyctus turneri, Lampadena anomala, Notolychnus valdiviae, and Notoscopelus caudispinosus, are first records for the South China Sea, and the species, Lampadena anomala is a new record for Asian oceans (Table 1). Four species (Triphoturus microchir, Diaphus diadematus, D. latus, and D. taaningi) were controversial in previous reports, so they are discussed in this study. Geographic distributions and localities of catches of all lanternfish species are shown on the maps (Figs. -
Inventory and Atlas of Corals and Coral Reefs, with Emphasis on Deep-Water Coral Reefs from the U
Inventory and Atlas of Corals and Coral Reefs, with Emphasis on Deep-Water Coral Reefs from the U. S. Caribbean EEZ Jorge R. García Sais SEDAR26-RD-02 FINAL REPORT Inventory and Atlas of Corals and Coral Reefs, with Emphasis on Deep-Water Coral Reefs from the U. S. Caribbean EEZ Submitted to the: Caribbean Fishery Management Council San Juan, Puerto Rico By: Dr. Jorge R. García Sais dba Reef Surveys P. O. Box 3015;Lajas, P. R. 00667 [email protected] December, 2005 i Table of Contents Page I. Executive Summary 1 II. Introduction 4 III. Study Objectives 7 IV. Methods 8 A. Recuperation of Historical Data 8 B. Atlas map of deep reefs of PR and the USVI 11 C. Field Study at Isla Desecheo, PR 12 1. Sessile-Benthic Communities 12 2. Fishes and Motile Megabenthic Invertebrates 13 3. Statistical Analyses 15 V. Results and Discussion 15 A. Literature Review 15 1. Historical Overview 15 2. Recent Investigations 22 B. Geographical Distribution and Physical Characteristics 36 of Deep Reef Systems of Puerto Rico and the U. S. Virgin Islands C. Taxonomic Characterization of Sessile-Benthic 49 Communities Associated With Deep Sea Habitats of Puerto Rico and the U. S. Virgin Islands 1. Benthic Algae 49 2. Sponges (Phylum Porifera) 53 3. Corals (Phylum Cnidaria: Scleractinia 57 and Antipatharia) 4. Gorgonians (Sub-Class Octocorallia 65 D. Taxonomic Characterization of Sessile-Benthic Communities 68 Associated with Deep Sea Habitats of Puerto Rico and the U. S. Virgin Islands 1. Echinoderms 68 2. Decapod Crustaceans 72 3. Mollusks 78 E. -
Fishes-Of-The-Salish-Sea-Pp18.Pdf
NOAA Professional Paper NMFS 18 Fishes of the Salish Sea: a compilation and distributional analysis Theodore W. Pietsch James W. Orr September 2015 U.S. Department of Commerce NOAA Professional Penny Pritzker Secretary of Commerce Papers NMFS National Oceanic and Atmospheric Administration Kathryn D. Sullivan Scientifi c Editor Administrator Richard Langton National Marine Fisheries Service National Marine Northeast Fisheries Science Center Fisheries Service Maine Field Station Eileen Sobeck 17 Godfrey Drive, Suite 1 Assistant Administrator Orono, Maine 04473 for Fisheries Associate Editor Kathryn Dennis National Marine Fisheries Service Offi ce of Science and Technology Fisheries Research and Monitoring Division 1845 Wasp Blvd., Bldg. 178 Honolulu, Hawaii 96818 Managing Editor Shelley Arenas National Marine Fisheries Service Scientifi c Publications Offi ce 7600 Sand Point Way NE Seattle, Washington 98115 Editorial Committee Ann C. Matarese National Marine Fisheries Service James W. Orr National Marine Fisheries Service - The NOAA Professional Paper NMFS (ISSN 1931-4590) series is published by the Scientifi c Publications Offi ce, National Marine Fisheries Service, The NOAA Professional Paper NMFS series carries peer-reviewed, lengthy original NOAA, 7600 Sand Point Way NE, research reports, taxonomic keys, species synopses, fl ora and fauna studies, and data- Seattle, WA 98115. intensive reports on investigations in fi shery science, engineering, and economics. The Secretary of Commerce has Copies of the NOAA Professional Paper NMFS series are available free in limited determined that the publication of numbers to government agencies, both federal and state. They are also available in this series is necessary in the transac- exchange for other scientifi c and technical publications in the marine sciences. -
A New Phylogenetic Test for Comparing Multiple High‐
ORIGINAL ARTICLE doi:10.1111/evo.12743 A new phylogenetic test for comparing multiple high-dimensional evolutionary rates suggests interplay of evolutionary rates and modularity in lanternfishes (Myctophiformes; Myctophidae) John S. S. Denton1,2,3 and Dean C. Adams4 1Department of Ichthyology and Richard Gilder Graduate School, American Museum of Natural History, New York, New York 10024 2Current Address: Department of Vertebrate Paleontology, American Museum of Natural History, New York, New York 10024 3E-mail: [email protected] 4Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, Iowa 50011 Received April 10, 2015 Accepted July 22, 2015 The interplay between evolutionary rates and modularity influences the evolution of organismal body plans by both promoting and constraining the magnitude and direction of trait response to ecological conditions. However, few studies have examined whether the best-fit hypothesis of modularity is the same as the shape subset with the greatest difference in evolutionary rate. Here, we develop a new phylogenetic comparative method for comparing evolutionary rates among high-dimensional traits, and apply this method to analyze body shape evolution in bioluminescent lanternfishes. We frame the study of evolutionary rates and modularity through analysis of three hypotheses derived from the literature on fish development, biomechanics, and biolu- minescent communication. We show that a development-informed partitioning of shape exhibits the greatest evolutionary rate differences among modules, but that a hydrodynamically informed partitioning is the best-fit modularity hypothesis. Furthermore, we show that bioluminescent lateral photophores evolve at a similar rate as, and are strongly integrated with, body shape in lanternfishes. These results suggest that overlapping life-history constraints on development and movement define axes of body shape evolution in lanternfishes, and that the positions of their lateral photophore complexes are likely a passive outcome of the interaction of these ecological pressures.