Epithelial Biology: Lessons from Caenorhabditis Elegans
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A Damage Sensor Associated with the Cuticle Coordinates Three Core Environmental Stress Responses in Caenorhabditis Elegans
HIGHLIGHTED ARTICLE | INVESTIGATION A Damage Sensor Associated with the Cuticle Coordinates Three Core Environmental Stress Responses in Caenorhabditis elegans William Dodd,*,1 Lanlan Tang,*,1 Jean-Christophe Lone,† Keon Wimberly,* Cheng-Wei Wu,* Claudia Consalvo,* Joni E. Wright,* Nathalie Pujol,†,2 and Keith P. Choe*,2 *Department of Biology, University of Florida, Gainesville, Florida 32611 and †Aix Marseille University, CNRS, INSERM, CIML, Marseille, France ORCID ID: 0000-0001-8889-3197 (N.P.) ABSTRACT Extracellular matrix barriers and inducible cytoprotective genes form successive lines of defense against chemical and microbial environmental stressors. The barrier in nematodes is a collagenous extracellular matrix called the cuticle. In Caenorhabditis elegans, disruption of some cuticle collagen genes activates osmolyte and antimicrobial response genes. Physical damage to the epidermis also activates antimicrobial responses. Here, we assayed the effect of knocking down genes required for cuticle and epidermal integrity on diverse cellular stress responses. We found that disruption of specific bands of collagen, called annular furrows, coactivates detoxification, hyperosmotic, and antimicrobial response genes, but not other stress responses. Disruption of other cuticle structures and epidermal integrity does not have the same effect. Several transcription factors act downstream of furrow loss. SKN-1/ Nrf and ELT-3/GATA are required for detoxification, SKN-1/Nrf is partially required for the osmolyte response, and STA-2/Stat and ELT- 3/GATA for antimicrobial gene expression. Our results are consistent with a cuticle-associated damage sensor that coordinates de- toxification, hyperosmotic, and antimicrobial responses through overlapping, but distinct, downstream signaling. KEYWORDS damage sensor; collagen; detoxification; osmotic stress; antimicrobial response XTRACELLULAR matrices (ECMs) are ubiquitous features Internal and epidermal tissues secrete ECMs as mechanical Eof animal tissues composed of secreted fibrous proteins support. -
The Snakeskin-Mesh Complex of Smooth Septate Junction Restricts Yorkie to Regulate Intestinal Homeostasis in Drosophila
University of Massachusetts Medical School eScholarship@UMMS GSBS Dissertations and Theses Graduate School of Biomedical Sciences 2020-01-15 The Snakeskin-Mesh Complex of Smooth Septate Junction Restricts Yorkie to Regulate Intestinal Homeostasis in Drosophila Hsi-Ju Chen University of Massachusetts Medical School Let us know how access to this document benefits ou.y Follow this and additional works at: https://escholarship.umassmed.edu/gsbs_diss Part of the Cell Biology Commons, and the Genetics Commons Repository Citation Chen H. (2020). The Snakeskin-Mesh Complex of Smooth Septate Junction Restricts Yorkie to Regulate Intestinal Homeostasis in Drosophila. GSBS Dissertations and Theses. https://doi.org/10.13028/ 0r15-ze63. Retrieved from https://escholarship.umassmed.edu/gsbs_diss/1059 This material is brought to you by eScholarship@UMMS. It has been accepted for inclusion in GSBS Dissertations and Theses by an authorized administrator of eScholarship@UMMS. For more information, please contact [email protected]. The Snakeskin-Mesh Complex of Smooth Septate Junction Restricts Yorkie to Regulate Intestinal Homeostasis in Drosophila A Dissertation Presented by Hsi-Ju Chen Submitted to the Faculty of the University of Massachusetts Graduate School of Biomedical Sciences, Worcester In partial fulfilment of the requirement for the requirements for the Degree of Doctor of Philosophy November 19, 2019 TABLE OF CONTENTS ABSTRACT CHAPTER I..................................................................................................... -
C. Elegans Gene M03f4.3 Is a D2-Like Dopamine Receptor
C. ELEGANS GENE M03F4.3 IS A D2-LIKE DOPAMINE RECEPTOR Arpy Sarkis Ohanian B.Sc., University of Washington, 2002 THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE In the Department of Molecular Biology and Biochemistry 0 Arpy Sarkis Ohanian 2004 SIMON FRASER UNIVERSITY July 2004 All rights reserved. This work may not be reproduced in whole or in part, by photocopy or other means, without permission of the author.[~q APPROVAL Name: Arpy Sarkis Ohanian Degree: Master of Science Title of Thesis: C. elegans gene M03F4.3 is a probable candidate for expression of dopamine receptor. Examining Committee: Chair: Dr. A. T. Beckenbach Associate Professor, Department of Biological Sciences Dr. David L. Baillie Senior Supervisor Professor, Department of Molecular Biology and Biochemistry Dr. Barry Honda Supervisor Professor, Department of Molecular Biology and Biochemistry Dr. Bruce Brandhorst Supervisor Professor, Department of Molecular Biology and Biochemistry Dr. Robert C. Johnsen Supervisor Research Associate, Department of Molecular Biology and Biochemistry Dr. Nicholas Harden Internal Examiner Associate Professor, Department of Molecular Biology and Biochemistry Date DefendedIApproved: July 29,2004 Partial Copyright Licence The author, whose copyright is declared on the title page of this work, has granted to Simon Fraser University the right to lend this thesis, project or extended essay to users of the Simon Fraser University Library, and to make partial or single copies only for such users or in response to a request from the library of any other university, or other educational institution, on its own behalf or for one of its users. -
A Novel Nuclear Receptor/Coregulator Complex Controls C. Elegans Lipid Metabolism, Larval Development, and Aging
Downloaded from genesdev.cshlp.org on September 24, 2021 - Published by Cold Spring Harbor Laboratory Press A novel nuclear receptor/coregulator complex controls C. elegans lipid metabolism, larval development, and aging Andreas H. Ludewig,1 Corinna Kober-Eisermann,1 Cindy Weitzel,1,2 Axel Bethke,1 Kerstin Neubert,1 Birgit Gerisch,1 Harald Hutter,3 and Adam Antebi1,2,4 1MPI fuer molekulare Genetik, 14195 Berlin, Germany; 2Huffington Center on Aging, Baylor College of Medicine, Houston, Texas 77030, USA; 3MPI fuer Medizinische Forschung, 69120 Heidelberg, Germany Environmental cues transduced by an endocrine network converge on Caenorhabditis elegans nuclear receptor DAF-12 to mediate arrest at dauer diapause or continuous larval development. In adults, DAF-12 selects long-lived or short-lived modes. How these organismal choices are molecularly specified is unknown. Here we show that coregulator DIN-1 and DAF-12 physically and genetically interact to instruct organismal fates. Homologous to human corepressor SHARP, DIN-1 comes in long (L) and short (S) isoforms, which are nuclear localized but have distinct functions. DIN-1L has embryonic and larval developmental roles. DIN-1S, along with DAF-12, regulates lipid metabolism, larval stage-specific programs, diapause, and longevity. Epistasis experiments reveal that din-1S acts in the dauer pathways downstream of lipophilic hormone, insulin/IGF, and TGF signaling, the same point as daf-12. We propose that the DIN-1S/DAF-12 complex serves as a molecular switch that implements slow life history alternatives in response to diminished hormonal signals. [Keywords: Nuclear receptor; coregulator; aging; dauer; heterochrony] Supplemental material is available at http://www.genesdev.org. -
And Hedgehog-Related Homologs in C. Elegans
Downloaded from genome.cshlp.org on September 26, 2021 - Published by Cold Spring Harbor Laboratory Press Letter The function and expansion of the Patched- and Hedgehog-related homologs in C. elegans Olivier Zugasti,1 Jeena Rajan,2 and Patricia E. Kuwabara1,3 1University of Bristol, Department of Biochemistry, School of Medical Sciences, Bristol BS8 1TD, United Kingdom The Hedgehog (Hh) signaling pathway promotes pattern formation and cell proliferation in Drosophila and vertebrates. Hh is a ligand that binds and represses the Patched (Ptc) receptor and thereby releases the latent activity of the multipass membrane protein Smoothened (Smo), which is essential for transducing the Hh signal. In Caenorhabditis elegans, the Hh signaling pathway has undergone considerable divergence. Surprisingly, obvious Smo and Hh homologs are absent whereas PTC, PTC-related (PTR), and a large family of nematode Hh-related (Hh-r) proteins are present. We find that the number of PTC-related and Hh-r proteins has expanded in C. elegans, and that this expansion occurred early in Nematoda. Moreover, the function of these proteins appears to be conserved in Caenorhabditis briggsae. Given our present understanding of the Hh signaling pathway, the absence of Hh and Smo raises many questions about the evolution and the function of the PTC, PTR, and Hh-r proteins in C. elegans. To gain insights into their roles, we performed a global survey of the phenotypes produced by RNA-mediated interference (RNAi). Our study reveals that these genes do not require Smo for activity and that they function in multiple aspects of C. elegans development, including molting, cytokinesis, growth, and pattern formation. -
Network Access to the Genome and Biology of Caenorhabditis Elegans
82–86 Nucleic Acids Research, 2001, Vol. 29, No. 1 © 2001 Oxford University Press WormBase: network access to the genome and biology of Caenorhabditis elegans Lincoln Stein*, Paul Sternberg1, Richard Durbin2, Jean Thierry-Mieg3 and John Spieth4 Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA, 1Howard Hughes Medical Institute and California Institute of Technology, Pasadena, CA, USA, 2The Sanger Centre, Hinxton, UK, 3National Center for Biotechnology Information, Bethesda, MD, USA and 4Genome Sequencing Center, Washington University, St Louis, MO, USA Received September 18, 2000; Accepted October 4, 2000 ABSTRACT and a page that shows the locus in the context of the physical map. WormBase (http://www.wormbase.org) is a web-based WormBase uses HTML linking to represent the relationships resource for the Caenorhabditis elegans genome and between objects. For example, a segment of genomic sequence its biology. It builds upon the existing ACeDB data- object is linked with the several predicted gene objects base of the C.elegans genome by providing data contained within it, and each predicted gene is linked to its curation services, a significantly expanded range of conceptual protein translation. subject areas and a user-friendly front end. The major components of the resource are described below. The C.elegans genome DESCRIPTION WormBase contains the ‘essentially complete’ genome of Caenorhabditis elegans (informally known as ‘the worm’) is a C.elegans, which now stands at 99.3 Mb of finished DNA small, soil-dwelling nematode that is widely used as a model interrupted by approximately 25 small gaps. In addition, the system for studies of metazoan biology (1). -
Lower Organisms As Alternatives for Toxicity Testing in Rodents with a Focus on Ceanorhabditis Elegans and the Zebrafish (Danio Rerio)
Report 340720003/2009 L.T.M. van der Ven Lower organisms as alternatives for toxicity testing in rodents With a focus on Ceanorhabditis elegans and the zebrafish (Danio rerio) RIVM report 340720003/2009 Lower organisms as alternatives for toxicity testing in rodents With a focus on Caenorhabditis elegans and the zebrafish (Danio rerio) L.T.M. van der Ven Contact: L.T.M. van der Ven Laboratory for Health Protection Research [email protected] This investigation has been performed by order and for the account of the Ministry of Health, Welfare and Sport, within the framework of V/340720 Alternatives for animal testing RIVM, P.O. Box 1, 3720 BA Bilthoven, the Netherlands Tel +31 30 274 91 11 www.rivm.nl © RIVM 2009 Parts of this publication may be reproduced, provided acknowledgement is given to the 'National Institute for Public Health and the Environment', along with the title and year of publication. RIVM report 340720003 2 Abstract Lower organisms as alternatives for toxicity testing in rodents With a focus on Caenorhabiditis elegans and the zebrafish (Danio rerio) The nematode C. elegans and the zebrafish embryo are promising alternative test models for assessment of toxic effects in rodents. Tests with these lower organisms may have a good predictive power for effects in humans and are thus complementary to tests with in vitro models (cell cultures). However, all described tests need further validation. This is the outcome of a literature survey, commissioned by the ministry of Health, Welfare and Sport of the Netherlands. The survey is part of the policy to reduce, refine and replace animal testing (3R policy). -
Wnt Signaling Controls Temporal Identities of Seam Cells in Caenorhabditis Elegans
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Developmental Biology 345 (2010) 144–155 Contents lists available at ScienceDirect Developmental Biology journal homepage: www.elsevier.com/developmentalbiology Wnt signaling controls temporal identities of seam cells in Caenorhabditis elegans Haiyan Ren a,b, Hong Zhang b,⁎ a Graduate Program in Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100730, PR China b National Institute of Biological Sciences, Beijing 102206, PR China article info abstract Article history: The Wnt signaling pathway regulates multiple aspects of the development of stem cell-like epithelial seam Received for publication 12 April 2010 cells in Caenorhabditis elegans, including cell fate specification and symmetric/asymmetric division. In this Revised 4 June 2010 study, we demonstrate that lit-1, encoding the Nemo-like kinase in the Wnt/β-catenin asymmetry pathway, Accepted 1 July 2010 plays a role in specifying temporal identities of seam cells. Loss of function of lit-1 suppresses defects in Available online 17 July 2010 retarded heterochronic mutants and enhances defects in precocious heterochronic mutants. Overexpressing lit-1 causes heterochronic defects opposite to those in lit-1(lf) mutants. LIT-1 exhibits a periodic expression Keywords: Heterochronic gene pattern in seam cells within each larval stage. The kinase activity of LIT-1 is essential for its role in the dcr-1 heterochronic pathway. lit-1 specifies the temporal fate of seam cells likely by modulating miRNA-mediated lit-1 silencing of target heterochronic genes. We further show that loss of function of other components of Wnt Wnt signaling signaling, including mom-4, wrm-1, apr-1, and pop-1, also causes heterochronic defects in sensitized genetic backgrounds. -
Study Questions 2 (Through Arthropod 1)
Study Questions 2 (through Arthropod 1) 1. Name the three embryonic germ layers found in all triploblastic animals. 2. What is a coelom? Which Phyla that we have discussed thus far have a true coelom? 3. Define cephalization. What is the name of the most primitive Phylum we have discussed that displays cephalization? 4. How is the digestive system of a Turbellarian similar to the digestive system of a Hydrozoan? Describe one way that they are different. 5. What is the function of flame cells? 6. How is the nervous system of a flatworm (Phylum Platyhelminthes) different from that of a Cnidarian? 7. Which two classes of flatworms are entirely parasitic? Describe some adaptations for parasitism that are found in these classes. 8. What are some of the major differences between Nemertine worms (Phylum Nemertea) and flatworms (Phylum Platyhelminthes)? In what major way are these two phyla similar? 9. What is a pseudocoelom? What are some of the functions of the pseudocoelom in Phylum Nematoda? 10. Nematodes have move in a characteristic whip like fashion. What aspect of their anatomy is responsible for this type of movement? 11. Describe the general structure of the Nematode nervous system. How is it different from the nervous system of Platyhelminthes? 12. What is unique about Nematode muscle cells? 13. What is unique about the way Nematode sperm move? 14. Many Nematodes are parasitic. Describe some adaptations that Nematodes have for parasitism. 15. What characteristics of the Nematode Caenorhabditis elegans make such an important model organism for the study of developmental genetics? 16. List two functions of the Rotifer corona. -
Genome and Transcriptome of the Regeneration- Competent Flatworm, Macrostomum Lignano
Genome and transcriptome of the regeneration- competent flatworm, Macrostomum lignano Kaja Wasika,1, James Gurtowskia,1, Xin Zhoua,b, Olivia Mendivil Ramosa, M. Joaquina Delása,c, Giorgia Battistonia,c, Osama El Demerdasha, Ilaria Falciatoria,c, Dita B. Vizosod, Andrew D. Smithe, Peter Ladurnerf, Lukas Schärerd, W. Richard McCombiea, Gregory J. Hannona,c,2, and Michael Schatza,2 aWatson School of Biological Sciences, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724; bMolecular and Cellular Biology Graduate Program, Stony Brook University, NY 11794; cCancer Research UK Cambridge Institute, University of Cambridge, Cambridge CB2 0RE, United Kingdom; dDepartment of Evolutionary Biology, Zoological Institute, University of Basel, 4051 Basel, Switzerland; eDepartment of Molecular and Computational Biology, University of Southern California, Los Angeles, CA 90089; and fDepartment of Evolutionary Biology, Institute of Zoology and Center for Molecular Biosciences Innsbruck, University of Innsbruck, A-6020 Innsbruck, Austria Contributed by Gregory J. Hannon, August 23, 2015 (sent for review June 25, 2015; reviewed by Ian Korf and Robert E. Steele) The free-living flatworm, Macrostomum lignano has an impressive of all cells (15), and have a very high proliferation rate (16, 17). Of regenerative capacity. Following injury, it can regenerate almost M. lignano neoblasts, 89% enter S-phase every 24 h (18). This high an entirely new organism because of the presence of an abundant mitotic activity results in a continuous stream of progenitors, somatic stem cell population, the neoblasts. This set of unique replacing tissues that are likely devoid of long-lasting, differentiated properties makes many flatworms attractive organisms for study- cell types (18). This makes M. -
Non-Canonical Apical Constriction Shapes Emergent Matrices in C
bioRxiv preprint doi: https://doi.org/10.1101/189951; this version posted January 1, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Non-canonical apical constriction shapes emergent matrices in C. elegans Sophie S. Katz1 and Alison R. Frand1 1Department of Biological Chemistry David Geffen School of Medicine University of California, Los Angeles Los Angeles, CA 90095 *To whom correspondence should be addressed: [email protected] Keywords: Actomyosin cytoskeleton, adherens junctions, epidermal morphogenesis, cuticle patterning, C. elegans molting cycle bioRxiv preprint doi: https://doi.org/10.1101/189951; this version posted January 1, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. SUMMARY We describe a morphogenetic mechanism that integrates apical constriction with remodeling apical extracellular matrices. Therein, a pulse of anisotropic constriction generates transient epithelial protrusions coupled to an interim apical matrix, which then patterns long durable ridges on C. elegans cuticles. ABSTRACT Specialized epithelia produce intricate apical matrices by poorly defined mechanisms. To address this question, we studied the role of apical constriction in patterning the acellular cuticle of C. elegans. Knocking-down epidermal actin, non-muscle myosin II or alpha-catenin led to the formation of mazes, rather than long ridges (alae) on the midline; yet, these same knockdowns did not appreciably affect the pattern of circumferential bands (annuli). Imaging epidermal F- actin and cell-cell junctions revealed that longitudinal apical-lateral and apical-medial AFBs, in addition to cortical meshwork, assemble when the fused seam narrows rapidly; and that discontinuous junctions appear as the seam gradually widens. -
Biology of the Caenorhabditis Elegans Germline Stem Cell System
| WORMBOOK CELL FATE, SIGNALING, AND DEVELOPMENT Biology of the Caenorhabditis elegans Germline Stem Cell System E. Jane Albert Hubbard*,1 and Tim Schedl†,1 *Skirball Institute of Biomolecular Medicine, Departments of Cell Biology and Pathology, New York University School of Medicine, † New York 10016 and Department of Genetics, Washington University School of Medicine, St. Louis, Missouri 63110 ORCID IDs: 0000-0001-5893-7232 (E.J.A.H.); 0000-0003-2148-2996 (T.S.) ABSTRACT Stem cell systems regulate tissue development and maintenance. The germline stem cell system is essential for animal reproduction, controlling both the timing and number of progeny through its influence on gamete production. In this review, we first draw general comparisons to stem cell systems in other organisms, and then present our current understanding of the germline stem cell system in Caenorhabditis elegans. In contrast to stereotypic somatic development and cell number stasis of adult somatic cells in C. elegans, the germline stem cell system has a variable division pattern, and the system differs between larval development, early adult peak reproduction and age-related decline. We discuss the cell and developmental biology of the stem cell system and the Notch regulated genetic network that controls the key decision between the stem cell fate and meiotic development, as it occurs under optimal laboratory conditions in adult and larval stages. We then discuss alterations of the stem cell system in response to environ- mental perturbations and aging. A recurring distinction is between processes that control stem cell fate and those that control cell cycle regulation. C. elegans is a powerful model for understanding germline stem cells and stem cell biology.