Emerging Issues in Population Viability Analysis
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Effective Population Size and Genetic Conservation Criteria for Bull Trout
North American Journal of Fisheries Management 21:756±764, 2001 q Copyright by the American Fisheries Society 2001 Effective Population Size and Genetic Conservation Criteria for Bull Trout B. E. RIEMAN* U.S. Department of Agriculture Forest Service, Rocky Mountain Research Station, 316 East Myrtle, Boise, Idaho 83702, USA F. W. A LLENDORF Division of Biological Sciences, University of Montana, Missoula, Montana 59812, USA Abstract.ÐEffective population size (Ne) is an important concept in the management of threatened species like bull trout Salvelinus con¯uentus. General guidelines suggest that effective population sizes of 50 or 500 are essential to minimize inbreeding effects or maintain adaptive genetic variation, respectively. Although Ne strongly depends on census population size, it also depends on demographic and life history characteristics that complicate any estimates. This is an especially dif®cult problem for species like bull trout, which have overlapping generations; biologists may monitor annual population number but lack more detailed information on demographic population structure or life history. We used a generalized, age-structured simulation model to relate Ne to adult numbers under a range of life histories and other conditions characteristic of bull trout populations. Effective population size varied strongly with the effects of the demographic and environmental variation included in our simulations. Our most realistic estimates of Ne were between about 0.5 and 1.0 times the mean number of adults spawning annually. We conclude that cautious long-term management goals for bull trout populations should include an average of at least 1,000 adults spawning each year. Where local populations are too small, managers should seek to conserve a collection of interconnected populations that is at least large enough in total to meet this minimum. -
Genetic and Demographic Dynamics of Small Populations of Silene Latifolia
Heredity (2003) 90, 181–186 & 2003 Nature Publishing Group All rights reserved 0018-067X/03 $25.00 www.nature.com/hdy Genetic and demographic dynamics of small populations of Silene latifolia CM Richards, SN Emery and DE McCauley Department of Biological Sciences, Vanderbilt University, PO Box 1812, Station B, Nashville, TN 37235, USA Small local populations of Silene alba, a short-lived herbac- populations doubled in size between samples, while others eous plant, were sampled in 1994 and again in 1999. shrank by more than 75%. Similarly, expected heterozygosity Sampling included estimates of population size and genetic and allele number increased by more than two-fold in diversity, as measured at six polymorphic allozyme loci. individual populations and decreased by more than three- When averaged across populations, there was very little fold in others. When population-specific change in number change between samples (about three generations) in and change in measures of genetic diversity were considered population size, measures of within-population genetic together, significant positive correlations were found be- diversity such as number of alleles or expected hetero- tween the demographic and genetic variables. It is specu- zygosity, or in the apportionment of genetic diversity within lated that some populations were released from the and among populations as measured by Fst. However, demographic consequences of inbreeding depression by individual populations changed considerably, both in terms gene flow. of numbers of individuals and genetic composition. Some Heredity (2003) 90, 181–186. doi:10.1038/sj.hdy.6800214 Keywords: genetic diversity; demography; inbreeding depression; gene flow Introduction 1986; Lynch et al, 1995), the interaction of genetics and demography could also influence population persistence How genetics and demography interact to influence in common species, because it is generally accepted that population viability has been a long-standing question in even many abundant species are not uniformly distrib- conservation biology. -
Population Ecology: Theory, Methods, Lenses Dr. Bill Fagan
Population ecology: Theory, methods, lenses Dr. Bill Fagan Population Ecology & Spatial Ecology A) Core principles of population growth B) Spatial problems and methods for modeling them C) Integrodifference equations as a robust platform Population Ecology & Spatial Ecology A) Core principles of population growth B) Spatial problems and methods for modeling them C) Integrodifference equations as a robust platform Socio – Environmental Issues: 1. Fisheries 2. Invasive Species 3. Biological Control 4. Ecological Footprints 5. Critical Patch Size / Reserve Design A) Core principles of population growth Berryman: On principles, laws, and theory in population ecology. Oikos. 2003 1) Exponential population growth as a null baseline. What causes deviations from that ? The Basics of Discrete Time Models Have Form Nt1 f Nt , Nt1, Nt2 ,... where N is the thing you are measuring and t is an index representing blocks of time. Constant time step = 1 unit (year, month, day, second) Time is discrete, #’s need not be In many cases Nt1 f Nt Reduced Form Status next time step depends only on where system is now. history is unimportant Alternatively: N t 1 f N t , N t 1 , N t 2 ... history is important wide applicability 1) Many ecological phenomenon change discretely - insects don’t hatch out all day long, only in morning - rodents are less mobile near full moon - seeds germinate in spring daily censuses 2) Data were collected at discrete times yearly censuses The Simplest Discrete Time Model N t1 N t “Geometric” Growth Equation N Thing we -
Concept of Population Ecology
Mini Review Int J Environ Sci Nat Res Volume 12 Issue 1 - June 2018 Copyright © All rights are reserved by Nida Tabassum Khan DOI: 10.19080/IJESNR.2018.12.555828 Concept of Population Ecology Nida Tabassum Khan* Department of Biotechnology, Faculty of Life Sciences and Informatics, Balochistan University of Information Technology Engineering and Management Sciences, Pakistan Submission: May 29, 2018; Published: June 06, 2018 *Corresponding author: Nida Tabassum Khan, Department of Biotechnology, Balochistan University, Quetta, Pakistan, Tel: ; Email: Abstract Population ecology deals with the study of the structure and subtleties of a population which comprises of a group of interacting organisms of the same specie that occupies a given area. The demographic structure of a population is a key factor which is characterized by the number of is growing, shrinking or remain constant in terms of its size. individual members (population size) present at each developmental stage of their cycle to identify whether the population of a specific specie Keywords: Population size; Population density; Gene pool; Life tables Introduction of random genetic drift therefore variation is easily sustained Population ecology deals with the study of the structure in large populations than in smaller ones [10]. Natural selection and subtleties of a population which comprises of a group of selects the most favorable phenotypes suited for an organism interacting organisms of the same specie that occupies a given survival thereby reducing variation within populations [11]. area [1]. Populations can be characterized as local which is a Population structure determines the arrays of demographic group of less number of individuals occupying a small area or variation such as mode of reproduction, age, reproduction met which is a group of local populations linked by disbanding frequency, offspring counts, gender ratio of newborns etc within/ members [2]. -
4 Genetics of Small Populations: the Case of the Laysan Finch
Case Studies in Ecology and Evolution DRAFT 4 Genetics of Small Populations: the case of the Laysan Finch In 1903, rabbits were introduced to a tiny island in the Hawaiian archipelago called Laysan Island. That island is only 187 ha in size, in the middle of the Pacific Ocean about 1000 km northeast of Hawaii. Despite the benign intentions for having rabbits on the island, the released rabbits quickly multiplied and devoured most of the vegetation. Oceanic islands are often home to unique or endemic species that have evolved in isolation. Laysan was no exception. Well-known examples of island endemics include the finches on the Galapagos Islands and the dodo that was only known from the islands of Mauritius. On Laysan there were several species of birds and plants that were known only from that single island. The introduced rabbits on the island destroyed the food supply for various species of land birds. Several endemic species of plants and animals were driven extinct, including the Laysan rail, the Laysan honeycreeper, the millerbird, and plants like the Laysan fan palm. Only 4 of 26 species of plants remained on the island in 1923, 20 years after the rabbits first arrived. Populations of other species declined to very small levels. One of the two surviving endemic land birds was a small finch called the Laysan finch, Telespiza cantans. After the rabbits were finally exterminated in 1923, the population of finches recovered on Laysan Island. Over the last four decades the average population size of on Laysan Island has been about 11,000 birds. -
Community-Based Population Recovery of Overexploited Amazonian Wildlife
G Model PECON-41; No. of Pages 5 ARTICLE IN PRESS Perspectives in Ecology and Conservation xxx (2017) xxx–xxx ´ Supported by Boticario Group Foundation for Nature Protection www.perspectecolconserv.com Policy Forums Community-based population recovery of overexploited Amazonian wildlife a,∗ b c d e João Vitor Campos-Silva , Carlos A. Peres , André P. Antunes , João Valsecchi , Juarez Pezzuti a Institute of Biological and Health Sciences, Federal University of Alagoas, Av. Lourival Melo Mota, s/n, Tabuleiro do Martins, Maceió 57072-900, AL, Brazil b Centre for Ecology, Evolution and Conservation, School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich NR47TJ, UK c Wildlife Conservation Society Brasil, Federal University of Amazonas, Av. Rodrigo Otavio, 3000, Manaus 69077-000, Amazonas, Brazil d Mamiraua Sustainable Development Institute (IDSM), Estrada da Bexiga 2584, Fonte Boa, Tefé, AM, Brazil e Centre for Advanced Amazon Studies, Federal University of Para, R. Augusto Correa 01, CEP 66075-110, Belém, PA, Brazil a b s t r a c t a r t i c l e i n f o Article history: The Amazon Basin experienced a pervasive process of resource overexploitation during the 20th-century, Received 3 June 2017 which induced severe population declines of many iconic vertebrate species. In addition to biodiversity Accepted 18 August 2017 loss and the ecological consequences of defaunation, food security of local communities was relentlessly threatened because wild meat had a historically pivotal role in protein acquisition by local dwellers. Keywords: Here we discuss the urgent need to regulate subsistence hunting by Amazonian semi-subsistence local Hunting regulation communities, which are far removed from the market and information economy. -
Amphibian Cascades Frog SOC X X Mountain Meadows, Bogs, Ponds Or
Taxa Species Species SMU/ESU/D Federal State BM CP CR EC KM NR WC WV NS Special needs Limiting factors Data gaps Conservation actions Key reference or plan, if available Common Scientific PS/Group Listing listing Name Name Status status Amphibian Cascades SOC X X Mountain meadows, bogs, ponds or potholes Montane species vulnerable to genetic Habitat requirements and how they may vary by Maintain connectivity of habitat. Monitor effects of fish http://www.fs.fed.us/psw/publications/documents/ frog above 2,400 feet elevation. Requires access isolation. Experiencing substantial elevation within the species' range. Habitat stocking and water quality on populations. Carefully manage psw_gtr244/psw_gtr244.pdf to permanent water. Lays eggs in shallow reductions in southern parts of range characteristics that could enhance migration livestock grazing in occupied wet meadows. Use prescribed sunny edges of ponds, or on low vegetation (e.g., CA). Potentially sensitive to and gene flow. Feeding habits. Effects of burning or hand-felling of trees periodically to set plant near ponds where warm sunlight speeds egg waterborne pathogens. pathogens airborne environmental pollution. succession. If reintroductions are warranted, use individuals development. Larvae may “school” in large Feasibility studies on reintroduction at historic from nearby populations and consult results of feasibility masses. sites. studies. Conservation actions in Oregon are particularly valuable given reductions in other parts of range. Amphibian Cascade X X Cold, fast-flowing, clear, permanent headwater Larvae take several years to reach sexual Basic inventory, abundance and population Maintain stream buffers to maintain cool water Howell, B.L. and N. M. Maggiulli. 2011. -
Carrying Capacity
CarryingCapacity_Sayre.indd Page 54 12/22/11 7:31 PM user-f494 /203/BER00002/Enc82404_disk1of1/933782404/Enc82404_pagefiles Carrying Capacity Carrying capacity has been used to assess the limits of into a single defi nition probably would be “the maximum a wide variety of things, environments, and systems to or optimal amount of a substance or organism (X ) that convey or sustain other things, organisms, or popula- can or should be conveyed or supported by some encom- tions. Four major types of carrying capacity can be dis- passing thing or environment (Y ).” But the extraordinary tinguished; all but one have proved empirically and breadth of the concept so defi ned renders it extremely theoretically fl awed because the embedded assump- vague. As the repetitive use of the word or suggests, car- tions of carrying capacity limit its usefulness to rying capacity can be applied to almost any relationship, bounded, relatively small-scale systems with high at almost any scale; it can be a maximum or an optimum, degrees of human control. a normative or a positive concept, inductively or deduc- tively derived. Better, then, to examine its historical ori- gins and various uses, which can be organized into four he concept of carrying capacity predates and in many principal types: (1) shipping and engineering, beginning T ways prefi gures the concept of sustainability. It has in the 1840s; (2) livestock and game management, begin- been used in a wide variety of disciplines and applica- ning in the 1870s; (3) population biology, beginning in tions, although it is now most strongly associated with the 1950s; and (4) debates about human population and issues of global human population. -
Understanding the Ecology of Extinction: Are We Close to the Critical Threshold?
Ann. Zool. Fennici 40: 71–80 ISSN 0003-455X Helsinki 30 April 2003 © Finnish Zoological and Botanical Publishing Board 2003 Understanding the ecology of extinction: are we close to the critical threshold? Tim G. Benton Institute of Biological Sciences, University of Stirling, FK9 4LA, UK (e-mail: [email protected]) Received 25 Nov. 2002, revised version received 20 Jan. 2003, accepted 21 Jan. 2003 Benton, T. G. 2003: Understanding the ecology of extinction: are we close to the critical threshold? — Ann. Zool. Fennici 40: 71–80. How much do we understand about the ecology of extinction? A review of recent lit- erature, and a recent conference in Helsinki gives a snapshot of the “state of the art”*. This “snapshot” is important as it highlights what we currently know, the tools avail- able for studying the process of extinction, its ecological correlates, and the theory concerning extinction thresholds. It also highlights that insight into the ecology of extinction can come from areas as diverse as the study of culture, the fossil record and epidemiology. Furthermore, it indicates where the gaps in knowledge and understand- ing exist. Of particular note is the need either to generate experimental data, or to make use of existing empirical data — perhaps through meta-analyses, to test general theory and guide its future development. Introduction IUCNʼs 2002 Red List, a total of 11 167 species are currently known to be threatened (http:// Few would argue that managing natural popu- www.redlist.org/info/tables/table1.html), though lations and their habitats is one of the greatest this is a gross underestimate of the true value, as, challenges for humans in the 21st century. -
Forecasting Extinctions: Uncertainties and Limitations
Diversity 2009, 1, 133-150; doi:10.3390/d1020133 OPEN ACCESS diversity ISSN 2071-1050 www.mdpi.com/journal/diversity Review Forecasting Extinctions: Uncertainties and Limitations Richard J. Ladle 1,2 1 School of Geography and the Environment, Oxford University, South Parks Road, Oxford, UK; E-Mail: [email protected]; Tel.: +55-31-3899 1902; Fax: +55-31-3899-2735 2 Department of Agricultural and Environmental Engineering, Federal University of Viçosa, Viçosa, Brazil Received: 13 October 2009 / Accepted: 14 November 2009 / Published: 26 November 2009 Abstract: Extinction forecasting is one of the most important and challenging areas of conservation biology. Overestimates of extinction rates or the extinction risk of a particular species instigate accusations of hype and overblown conservation rhetoric. Conversely, underestimates may result in limited resources being allocated to other species/habitats perceived as being at greater risk. In this paper I review extinction models and identify the key sources of uncertainty for each. All reviewed methods which claim to estimate extinction probabilities have severe limitations, independent of if they are based on ecological theory or on rather subjective expert judgments. Keywords: extinction; uncertainty; forecasting; local extinction; viability 1. Introduction ―Prediction is very difficult, especially about the future‖ Nils Bohr, Nobel Prize winning physicist Preventing the extinction of species is probably the most emblematic objective of the global conservation movement. To fulfill this aim effectively requires that decision makers and environmental managers are provided with accurate information on: (1) the identities of specific species/populations with a high probability of going extinct without further interventions; (2) the predicted rates of extinction among a range of taxa in different geographic areas and biomes under various ecological scenarios. -
Evaluating the Small Population Paradigm for Rare Large-Bodied Woodpeckers, with Implications for the Ivory-Billed Woodpecker
Copyright © 2008 by the author(s). Published here under license by the Resilience Alliance. Mattsson, B. J., R. S. Mordecai, M. J. Conroy, J. T. Peterson, R. J. Cooper, and H. Christensen. 2008. Evaluating the small population paradigm for rare large-bodied woodpeckers, with implications for the Ivory-billed Woodpecker. Avian Conservation and Ecology - Écologie et conservation des oiseaux 3(2): 5. [online] URL: http://www.ace-eco.org/vol3/iss2/art5/ Research Papers Evaluating the Small Population Paradigm for Rare Large-Bodied Woodpeckers, with Implications for the Ivory-billed Woodpecker Évaluation du paradigme des petites populations pour les pics de grande taille et implications pour le Pic à bec ivoire Brady J. Mattsson 1, Rua S. Mordecai 1, Michael J. Conroy 1, James T. Peterson 1, Robert J. Cooper 1, and Hans Christensen 2 ABSTRACT. Six large-bodied, ≥ 120 g, woodpecker species are listed as near-threatened to critically endangered by the International Union for Conservation of Nature (IUCN). The small population paradigm assumes that these populations are likely to become extinct without an increase in numbers, but the combined influences of initial population size and demographic rates, i.e., annual adult survival and fecundity, may drive population persistence for these species. We applied a stochastic, stage-based single-population model to available demographic rates for Dryocopus and Campephilus woodpeckers. In particular, we determined the change in predicted extinction rate, i.e., proportion of simulated populations that went extinct within 100 yr, to concomitant changes in six input parameters. To our knowledge, this is the first study to evaluate the combined importance of initial population size and demographic rates for the persistence of large- bodied woodpeckers. -
Genome Size and the Extinction of Small Populations
bioRxiv preprint doi: https://doi.org/10.1101/173690; this version posted August 8, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Genome size and the extinction of small populations Thomas LaBar1;2;3, Christoph Adami1;2;3;4 1 Department of Microbiology & Molecular Genetics 2 BEACON Center for the Study of Evolution in Action 3 Program in Ecology, Evolutionary Biology, and Behavior 4 Department of Physics and Astronomy Michigan State University, East Lansing, MI 48824 Abstract Species extinction is ubiquitous throughout the history of life. Understanding the factors that cause some species to go extinct while others survive will help us manage Earth's present-day biodiversity. Most studies of extinction focus on inferring causal factors from past extinction events, but these studies are constrained by our inability to observe extinction events as they occur. Here, we use digital experimental evolution to avoid these constraints and study \extinction in action". Previous digital evolution experiments have shown that strong genetic drift in small populations led to larger genomes, greater phenotypic complexity, and high extinction rates. Here we show that this elevated extinction rate is a consequence of genome expansions and a con- current increase in the genomic mutation rate. High genomic mutation rates increase the lethal mutation rate, leading to an increase the likelihood of a mutational melt- down. Genome expansions contribute to this lethal mutational load because genome expansions increase the likelihood of lethal mutations.