The Secreted MSP Domain of C. Elegans VAPB Homolog VPR-1 Patterns the Adult Striated Muscle Mitochondrial Reticulum Via SMN-1
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Dynamin Functions and Ligands: Classical Mechanisms Behind
1521-0111/91/2/123–134$25.00 http://dx.doi.org/10.1124/mol.116.105064 MOLECULAR PHARMACOLOGY Mol Pharmacol 91:123–134, February 2017 Copyright ª 2017 by The American Society for Pharmacology and Experimental Therapeutics MINIREVIEW Dynamin Functions and Ligands: Classical Mechanisms Behind Mahaveer Singh, Hemant R. Jadhav, and Tanya Bhatt Department of Pharmacy, Birla Institute of Technology and Sciences Pilani, Pilani Campus, Rajasthan, India Received May 5, 2016; accepted November 17, 2016 Downloaded from ABSTRACT Dynamin is a GTPase that plays a vital role in clathrin-dependent pathophysiology of various disorders, such as Alzheimer’s disease, endocytosis and other vesicular trafficking processes by acting Parkinson’s disease, Huntington’s disease, Charcot-Marie-Tooth as a pair of molecular scissors for newly formed vesicles originating disease, heart failure, schizophrenia, epilepsy, cancer, dominant ’ from the plasma membrane. Dynamins and related proteins are optic atrophy, osteoporosis, and Down s syndrome. This review is molpharm.aspetjournals.org important components for the cleavage of clathrin-coated vesicles, an attempt to illustrate the dynamin-related mechanisms involved phagosomes, and mitochondria. These proteins help in organelle in the above-mentioned disorders and to help medicinal chemists division, viral resistance, and mitochondrial fusion/fission. Dys- to design novel dynamin ligands, which could be useful in the function and mutations in dynamin have been implicated in the treatment of dynamin-related disorders. Introduction GTP hydrolysis–dependent conformational change of GTPase dynamin assists in membrane fission, leading to the generation Dynamins were originally discovered in the brain and identi- of endocytic vesicles (Praefcke and McMahon, 2004; Ferguson at ASPET Journals on September 23, 2021 fied as microtubule binding partners. -
How Microtubules Control Focal Adhesion Dynamics
JCB: Review Targeting and transport: How microtubules control focal adhesion dynamics Samantha Stehbens and Torsten Wittmann Department of Cell and Tissue Biology, University of California, San Francisco, San Francisco, CA 94143 Directional cell migration requires force generation that of integrin-mediated, nascent adhesions near the cell’s leading relies on the coordinated remodeling of interactions with edge, which either rapidly turn over or connect to the actin cytoskeleton (Parsons et al., 2010). Actomyosin-mediated the extracellular matrix (ECM), which is mediated by pulling forces allow a subset of these nascent FAs to grow integrin-based focal adhesions (FAs). Normal FA turn- and mature, and provide forward traction forces. However, in over requires dynamic microtubules, and three members order for cells to productively move forward, FAs also have to of the diverse group of microtubule plus-end-tracking release and disassemble underneath the cell body and in the proteins are principally involved in mediating micro- rear of the cell. Spatial and temporal control of turnover of tubule interactions with FAs. Microtubules also alter these mature FAs is important, as they provide a counterbalance to forward traction forces, and regulated FA disassembly is the assembly state of FAs by modulating Rho GTPase required for forward translocation of the cell body. An important signaling, and recent evidence suggests that microtubule- question that we are only beginning to understand is how FA mediated clathrin-dependent and -independent endo turnover is spatially and temporally regulated to allow cells cytosis regulates FA dynamics. In addition, FA-associated to appropriately respond to extracellular signals, allowing for microtubules may provide a polarized microtubule track for coordinated and productive movement. -
Defining the Kv2.1–Syntaxin Molecular Interaction Identifies a First-In-Class Small Molecule Neuroprotectant
Defining the Kv2.1–syntaxin molecular interaction identifies a first-in-class small molecule neuroprotectant Chung-Yang Yeha,b,1, Zhaofeng Yec,d,1, Aubin Moutale, Shivani Gaura,b, Amanda M. Hentonf,g, Stylianos Kouvarosf,g, Jami L. Salomana, Karen A. Hartnett-Scotta,b, Thanos Tzounopoulosa,f,g, Rajesh Khannae, Elias Aizenmana,b,g,2, and Carlos J. Camachoc,2 aDepartment of Neurobiology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261; bPittsburgh Institute for Neurodegenerative Diseases, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261; cDepartment of Computational and Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261; dSchool of Medicine, Tsinghua University, Beijing 100871, China; eDepartment of Pharmacology, College of Medicine, University of Arizona, Tucson, AZ 85724; fDepartment of Otolaryngology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261; and gPittsburgh Hearing Research Center, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261 Edited by Lily Yeh Jan, University of California, San Francisco, CA, and approved June 19, 2019 (received for review February 27, 2019) + The neuronal cell death-promoting loss of cytoplasmic K follow- (13). The Kv2.1-dependent cell death pathway is normally initiated ing injury is mediated by an increase in Kv2.1 potassium channels in by the oxidative liberation of zinc from intracellular metal-binding the plasma membrane. This phenomenon relies on Kv2.1 binding to proteins (14), leading to the sequential phosphorylation of syntaxin 1A via 9 amino acids within the channel intrinsically disor- Kv2.1 residues Y124 and S800 by Src and p38 kinases, respectively dered C terminus. Preventing this interaction with a cell and blood- (15–17). -
Removal of Abnormal Myofilament O-Glcnacylation Restores Ca
Diabetes Volume 64, October 2015 3573 Genaro A. Ramirez-Correa,1 Junfeng Ma,2 Chad Slawson,3 Quira Zeidan,2 Nahyr S. Lugo-Fagundo,1 Mingguo Xu,1 Xiaoxu Shen,4 Wei Dong Gao,4 Viviane Caceres,5 Khalid Chakir,5 Lauren DeVine,2 Robert N. Cole,2 Luigi Marchionni,6 Nazareno Paolocci,5 Gerald W. Hart,2 and Anne M. Murphy1 Removal of Abnormal Myofilament O-GlcNAcylation Restores Ca2+ Sensitivity in Diabetic Cardiac Muscle Diabetes 2015;64:3573–3587 | DOI: 10.2337/db14-1107 Contractile dysfunction and increased deposition of In diabetic cardiomyopathy, the contractile and electro- O-linked b-N-acetyl-D-glucosamine (O-GlcNAc) in car- physiological properties of the cardiac muscle are altered diac proteins are a hallmark of the diabetic heart. How- (1). Prior studies have mainly focused on alterations in ever, whether and how this posttranslational alteration Ca2+ handling (2–4). However, these perturbations alone contributes to lower cardiac function remains unclear. unlikely account for lower force production and altered COMPLICATIONS fi b Using a re ned -elimination/Michael addition with tan- relaxation typically found in the heart of patients with dem mass tags (TMT)–labeling proteomic technique, we diabetes (5,6). Indeed, the intrinsic properties of cardiac show that CpOGA, a bacterial analog of O-GlcNAcase myofilaments appear to be altered too (7,8). More specif- (OGA) that cleaves O-GlcNAc in vivo, removes site- 2+ 2+ fi specific O-GlcNAcylation from myofilaments, restoring ically, Ca sensitivity (ECa 50), a measure of myo la- 2+ Ca2+ sensitivity in streptozotocin (STZ) diabetic cardiac ment force production at near physiological Ca levels, – muscles. -
Dynamin Autonomously Regulates Podocyte Focal Adhesion Maturation
BRIEF COMMUNICATION www.jasn.org Dynamin Autonomously Regulates Podocyte Focal Adhesion Maturation † † † Changkyu Gu,* Ha Won Lee, Garrett Garborcauskas,* Jochen Reiser, Vineet Gupta, and Sanja Sever* *Department of Medicine, Harvard Medical School, Division of Nephrology, Massachusetts General Hospital, Charlestown, Massachusetts; and †Department of Internal Medicine, Rush University Medical Center, Chicago, Illinois ABSTRACT Rho family GTPases, the prototypical members of which are Cdc42, Rac1, and RhoA, in podocytes via a parallel signaling path- are molecular switches best known for regulating the actin cytoskeleton. In addition way to RhoA. to the canonical small GTPases, the large GTPase dynamin has been implicated in To induce actin polymerization, dy- regulating the actin cytoskeleton via direct dynamin-actin interactions. The physio- naminmustformDynOLIGO.12 The logic role of dynamin in regulating the actin cytoskeleton has been linked to the availability of Bis-T-23 (Aberjona Labo- maintenance of the kidney filtration barrier. Additionally, the small molecule Bis-T- ratories, Inc., Woburn, MA) allowed us 23, which promotes actin–dependent dynamin oligomerization and thus, increases to examine whether DynOLIGO–induced actin polymerization, improved renal health in diverse models of CKD, implicating actin polymerization affects the forma- dynamin as a potential therapeutic target for the treatment of CKD. Here, we show tion of FAs and stress fibers in podocytes. that treating cultured mouse podocytes with Bis-T-23 promoted stress fiber forma- The effect of Bis-T-23 on the actin cyto- tion and focal adhesion maturation in a dynamin-dependent manner. Furthermore, skeleton in mouse podocytes (Figure 1A) Bis-T-23 induced the formation of focal adhesions and stress fibers in cells in which was examined using a fully automated the RhoA signaling pathway was downregulated by multiple experimental ap- high–throughput assay that measures proaches. -
Signal Peptide Peptidase‐Like 2C Impairs Vesicular Transport And
Article Signal peptide peptidase-like 2c impairs vesicular transport and cleaves SNARE proteins Alkmini A Papadopoulou1, Stephan A Müller2, Torben Mentrup3, Merav D Shmueli2,4,5, Johannes Niemeyer3, Martina Haug-Kröper1, Julia von Blume6, Artur Mayerhofer7, Regina Feederle2,8,9 , Bernd Schröder3,10 , Stefan F Lichtenthaler2,5,9 & Regina Fluhrer1,2,* Abstract Introduction Members of the GxGD-type intramembrane aspartyl proteases The high degree of compartmentalization in eukaryotic cells creates have emerged as key players not only in fundamental cellular a need for specific and precise protein trafficking. To meet this need, processes such as B-cell development or protein glycosylation, but cells have developed a complex system of vesicle transport that also in development of pathologies, such as Alzheimer’s disease or ensures safe sorting of cargo proteins, in particular between the dif- hepatitis virus infections. However, one member of this protease ferent compartments of the secretory pathway [1–3]. Vesicles origi- family, signal peptide peptidase-like 2c (SPPL2c), remains orphan nate from a donor membrane, translocate in a targeted manner, and and its capability of proteolysis as well as its physiological function get specifically tethered to the target membrane, before fusing with is still enigmatic. Here, we demonstrate that SPPL2c is catalytically it. Soluble N-ethylmaleimide-sensitive factor attachment protein active and identify a variety of SPPL2c candidate substrates using receptor (SNARE) proteins are known since three decades to medi- proteomics. The majority of the SPPL2c candidate substrates clus- ate specific membrane fusion [4,5]. So far, 38 SNARE proteins have ter to the biological process of vesicular trafficking. -
Profiling of the Muscle-Specific Dystroglycan Interactome Reveals the Role of Hippo Signaling in Muscular Dystrophy and Age-Dependent Muscle Atrophy Andriy S
Yatsenko et al. BMC Medicine (2020) 18:8 https://doi.org/10.1186/s12916-019-1478-3 RESEARCH ARTICLE Open Access Profiling of the muscle-specific dystroglycan interactome reveals the role of Hippo signaling in muscular dystrophy and age-dependent muscle atrophy Andriy S. Yatsenko1†, Mariya M. Kucherenko2,3,4†, Yuanbin Xie2,5†, Dina Aweida6, Henning Urlaub7,8, Renate J. Scheibe1, Shenhav Cohen6 and Halyna R. Shcherbata1,2* Abstract Background: Dystroglycanopathies are a group of inherited disorders characterized by vast clinical and genetic heterogeneity and caused by abnormal functioning of the ECM receptor dystroglycan (Dg). Remarkably, among many cases of diagnosed dystroglycanopathies, only a small fraction can be linked directly to mutations in Dg or its regulatory enzymes, implying the involvement of other, not-yet-characterized, Dg-regulating factors. To advance disease diagnostics and develop new treatment strategies, new approaches to find dystroglycanopathy-related factors should be considered. The Dg complex is highly evolutionarily conserved; therefore, model genetic organisms provide excellent systems to address this challenge. In particular, Drosophila is amenable to experiments not feasible in any other system, allowing original insights about the functional interactors of the Dg complex. Methods: To identify new players contributing to dystroglycanopathies, we used Drosophila as a genetic muscular dystrophy model. Using mass spectrometry, we searched for muscle-specific Dg interactors. Next, in silico analyses allowed us to determine their association with diseases and pathological conditions in humans. Using immunohistochemical, biochemical, and genetic interaction approaches followed by the detailed analysis of the muscle tissue architecture, we verified Dg interaction with some of the discovered factors. -
Incredibly Close—A Newly Identified Peroxisome–ER Contact Site in Humans
JCB: Spotlight Incredibly close—A newly identified peroxisome–ER contact site in humans Maya Schuldiner and Einat Zalckvar Department of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel Peroxisomes are tiny organelles that control important residents of contact sites and to mediate membrane association and diverse metabolic processes via their interplay with through their major sperm protein (MSP) domain (Wyles and Ridgway, 2004), they were exciting candidates for tethers. The other organelles, including the endoplasmic reticulum MSP domain of VAPs interacts with proteins that contain two (ER). In this issue, Costello et al. (2017. J. Cell Biol. phenylalanines (FF) in an acidic tract (FFAT) motif. When the https://doi.org/10.1083/jcb.201607055) and Hua et MSP and FFAT motifs are located in proteins that are anchored al. (2017. J. Cell Biol. https://doi.org/10.1083/jcb to opposing organelle membranes, the MSP–FFAT interac- tion zippers up the contact. Hua et al. (2017) looked among .201608128) identify a peroxisome–ER contact site in their PEX16-binding candidates for proteins with a FFAT do- human cells held together by a tethering complex of main and identified ACBD5. The observation that peroxisomal VAPA/B (vesicle-associated membrane protein–associated ACBD5 contained a FFAT domain and could be found in the same protein complex as the ER tethering proteins VAPA and proteins A/B) and ACBD5 (acyl Co-A binding protein 5). VAPB led both groups to investigate whether or not these pro- teins play a role in peroxisome–ER tethering. Peroxisomes are organelles enclosed by a single membrane We have recently put in place a suggestion to term a pro- that exist in most eukaryotic organisms and cells and are in- tein a tether only if it abides by three criteria (Eisenberg-Bord volved in various metabolic, as well as nonmetabolic, cellular et al., 2016). -
CANDIDATE GENES in the FIELD of EXERCISE GENOMICS Abstract
EXERCISE AND QUALITY OF LIFE Review article Volume 3, No. 1, 2011, 23-29 575.113:612.74 UDC CANDIDATE GENES IN THE FIELD OF EXERCISE GENOMICS ã Vladimir Gali Department of Physiology Medical faculty Novi Sad Abstract Skeletal muscle is extremely adaptable to various stresses which can be placed upon it. In spite of importance of skeletal muscles, little is known about genetic factors which demonstrate high influence to muscle size, function, strength and adaptation to various environmental factors. Because endurance performance is a multifactorial trait, the list of candidate genes which could account for human variation in related phenotypes is extensive. One of the first characterized and most frequently studied genetic variant is a polymorphism in the angiotensin converting enzyme I gene. The ACTN3 gene is the first structural skeletal muscle gene with a relation between its ’ performance. N genotype and elite sprinter evertheless, current genetic testing cannot provide an extra advantage over existing testing methods in determining sports selection in young athletes. The main challenge still remains to identify other, complex polygenetic variants and their interactions with environmental factors which could provide benefit in the sports selection and existing talent identification. Keywords: exercise genomics, genetic polymorphism, muscle tissue Introduction Muscle tissue constitutes approximately 30% of body mass, it is metabolically very active with high turnover of energy and is capable of efficient response to different environmental stimuli. Skeletal muscle is extremely adaptable to various stresses which can be placed upon it. These adaptations can be either positive, such as tissue growth, extreme athletic performance or reparation of an injury, or negative, such as decline in mass and function over the ’s years of disuse or disease. -
Myosin 1E Interacts with Synaptojanin-1 and Dynamin and Is Involved in Endocytosis
FEBS Letters 581 (2007) 644–650 Myosin 1E interacts with synaptojanin-1 and dynamin and is involved in endocytosis Mira Krendela,*, Emily K. Osterweila, Mark S. Moosekera,b,c a Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06511, USA b Department of Cell Biology, Yale University, New Haven, CT 06511, USA c Department of Pathology, Yale University, New Haven, CT 06511, USA Received 21 November 2006; revised 8 January 2007; accepted 11 January 2007 Available online 18 January 2007 Edited by Felix Wieland Myo1 isoforms (Myo3p and Myo5p) leads to defects in endo- Abstract Myosin 1E is one of two ‘‘long-tailed’’ human Class I myosins that contain an SH3 domain within the tail region. SH3 cytosis [3].InAcanthamoeba, various Myo1 isoforms are domains of yeast and amoeboid myosins I interact with activa- found in association with intracellular vesicles [10].InDictyos- tors of the Arp2/3 complex, an important regulator of actin poly- telium, long-tailed Myo1s (myo B, C, and D) are required for merization. No binding partners for the SH3 domains of myosins fluid-phase endocytosis [11]. I have been identified in higher eukaryotes. In the current study, Myo1e, the mouse homolog of the human long-tailed myo- we show that two proteins with prominent functions in endocyto- sin, Myo1E (formerly referred to as Myo1C under the old myo- sis, synaptojanin-1 and dynamin, bind to the SH3 domain of sin nomenclature [12]), has been previously localized to human Myo1E. Myosin 1E co-localizes with clathrin- and dyn- phagocytic structures [13]. In this study, we report that Myo1E amin-containing puncta at the plasma membrane and this co- binds to two proline-rich proteins, synaptojanin-1 and dyn- localization requires an intact SH3 domain. -
Hypertrophic Cardiomyopathy- Associated Mutations in Genes That Encode Calcium-Handling Proteins
Current Molecular Medicine 2012, 12, 507-518 507 Beyond the Cardiac Myofilament: Hypertrophic Cardiomyopathy- Associated Mutations in Genes that Encode Calcium-Handling Proteins A.P. Landstrom and M.J. Ackerman* Departments of Medicine, Pediatrics, and Molecular Pharmacology & Experimental Therapeutics, Divisions of Cardiovascular Diseases and Pediatric Cardiology, and the Windland Smith Rice Sudden Death Genomics Laboratory, Mayo Clinic, Rochester, Minnesota, USA Abstract: Traditionally regarded as a genetic disease of the cardiac sarcomere, hypertrophic cardiomyopathy (HCM) is the most common inherited cardiovascular disease and a significant cause of sudden cardiac death. While the most common etiologies of this phenotypically diverse disease lie in a handful of genes encoding critical contractile myofilament proteins, approximately 50% of patients diagnosed with HCM worldwide do not host sarcomeric gene mutations. Recently, mutations in genes encoding calcium-sensitive and calcium- handling proteins have been implicated in the pathogenesis of HCM. Among these are mutations in TNNC1- encoded cardiac troponin C, PLN-encoded phospholamban, and JPH2-encoded junctophilin 2 which have each been associated with HCM in multiple studies. In addition, mutations in RYR2-encoded ryanodine receptor 2, CASQ2-encoded calsequestrin 2, CALR3-encoded calreticulin 3, and SRI-encoded sorcin have been associated with HCM, although more studies are required to validate initial findings. While a relatively uncommon cause of HCM, mutations in genes that encode calcium-handling proteins represent an emerging genetic subset of HCM. Furthermore, these naturally occurring disease-associated mutations have provided useful molecular tools for uncovering novel mechanisms of disease pathogenesis, increasing our understanding of basic cardiac physiology, and dissecting important structure-function relationships within these proteins. -
Myofilament Dynamics Modulate Cellular Drivers of Arrhythmogenesis in Human Cardiac Disease
MYOFILAMENT DYNAMICS MODULATE CELLULAR DRIVERS OF ARRHYTHMOGENESIS IN HUMAN CARDIAC DISEASE by Melanie Anne Zile A dissertation submitted to Johns Hopkins University in conformity with the requirements for the degree of Doctor of Philosophy Baltimore, Maryland October, 2017 © Melanie Anne Zile 2017 All rights reserved Abstract Cardiac arrhythmia is common in cardiac disease, but our understanding of the cellular mechanisms underlying arrhythmia is incomplete. Alternans, the beat-to-beat alteration in cardiac electrical or mechanical signals, has been linked to susceptibility to lethal arrhythmias in human heart failure (HF) as well as in human chronic atrial fibrillation (cAF). In addition, early afterdepolarizations (EADs), a type of aberrant cellular behavior that causes spontaneous slowing or reversal of normal repolarization, have been implicated as an arrhythmogenic trigger in human hypertrophic cardiomyopathy (HCM). Abnormal myofilament dynamics has been observed in human HF, HCM, and cAF, but whether this aberrant behavior alters the formation of alternans or EADs remains unknown. To address this gap in understanding, a computational modeling approach was taken. Three mechanistically-based bidirectionally coupled human electromechanical myocyte models were constructed, under the conditions of HF, HCM, or cAF. Our goal was to elucidate whether aberrant myofilament dynamics modulate the cellular drivers of arrhythmogenesis in human cardiac disease. In simulations with our human HF ventricular myocyte model, we found that the magnitudes of force, calcium, and action potential voltage alternans were modulated by heart failure induced-remodeling of mechanical parameters and sarcomere length due to the presence of myofilament feedback (MEF) at clinically-relevant pacing rates. In simulations with our human HCM ventricular myocyte model, we found that incorporating MEF diminished the degree of repolarization reserve reduction necessary for EADs to emerge and increased the frequency of EAD occurrence, especially at faster pacing rates.