Conidial Morphology Changes in Four <I>Phyllosticta</I>
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Lignocellulolytic Capability of Endophytic Phyllosticta Sp
Open Access Journal of Bacteriology and Mycology Research Article Lignocellulolytic Capability of Endophytic Phyllosticta sp. Wikee S1, Chumnunti P2,3, Kanghae A2, Chukeatirote E2, Lumyong S1 and Faulds CB4* Abstract 1Department of Biology, Faculty of Science, Chiang Mai The Dothideomycetes represent the largest fungal class of Ascomycota. It is University, Thailand an ubiquitous class of fungi whose members span a wide spectrum of lifestyles 2School of Science, Mae Fah Luang University, Chiang and host interactions. The endophytic fungus Phyllosticta is one members of the Rai, Thailand Dothideomycetes, causing disease in economic crops. Phyllosticta was screened 3Institute of Excellence in Fungal Research, School of for the degradation of lignocellulosic biomass of commercial relevance, such as Science, Mae Fah Luang University, Chiang Rai, Thailand rice straw, rice husk, sorghum, wheat straw, miscanthus, lavender flower, and 4Aix Marseille Universite’, INRA, Biodiversité et lavender straw. The highest degrading strains were identified from an initial screen Biotechnologie Fongiques (BBF), Marseille, France and further analyzed for the secretion of lignocellulosic enzymes during growth *Corresponding author: Faulds CB, Aix Marseille on the different biomasses. With Phyllosticta capitalensis (MFLUCC14-0233), Universite’, INRA, Biodiversité et Biotechnologie maximum activity of arabinase (944.18 U/ml culture), cellulase (27.10 U/ml), Fongiques (BBF), Marseille, France xylanase (10.85 U/ml), pectinase (465.47 U/ml), and laccase (35.68 U/ml) activities could be detected in the secretome during growth on lavender flowers Received: February 16, 2017; Accepted: March 22, and lavender straw. Phyllosticta capitalensis is thus an interesting new strain for 2017; Published: March 28, 2017 the production of lignocellulosic enzymes during growth on cheap agro-industrial biomass. -
Two New Endophytic Species of Phyllosticta (Phyllostictaceae, Botryosphaeriales) from Southern China Article
Mycosphere 8(2): 1273–1288 (2017) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/8/2/11 Copyright © Guizhou Academy of Agricultural Sciences Two new endophytic species of Phyllosticta (Phyllostictaceae, Botryosphaeriales) from Southern China Lin S1, 2, Sun X3, He W1, Zhang Y2 1 Beijing Key Laboratory for Forest Pest Control, Beijing Forestry University, Beijing 100083, PR China 2 Institute of Microbiology, P.O. Box 61, Beijing Forestry University, Beijing 100083, PR China 3 State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China Lin S, Sun X, He W, Zhang Y 2017 – Two new endophytic species of Phyllosticta (Phyllostictaceae, Botryosphaeriales) from Southern China. Mycosphere 8(2), 1273–1288, Doi 10.5943/mycosphere/8/2/11 Abstract Phyllosticta is an important genus known to cause various leaf spots and fruit diseases worldwide on a large range of hosts. Two new endophytic species of Phyllosticta (P. dendrobii and P. illicii) are described and illustrated from Dendrobium nobile and Illicium verum in China. Phylogenetic analysis based on combined ITS, LSU, tef1-a, ACT and GPDH loci supported their separation from other species of Phyllosticta. Morphologically, P. dendrobii is most comparable with P. aplectri, while the large-sized pycnidia of P. dendrobii differentiate it from P. aplectri. Members of Phyllosticta are first reported from Dendrobium and Illicium. Key words – Asia – Botryosphaeriales – leaf spots – Multilocus phylogeny Introduction Phyllosticta Pers. was introduced by Persoon (1818) and typified by P. convallariae Pers. Many species of Phyllosticta cause leaf and fruit spots on various host plants, such as P. -
Redisposition of Species from the Guignardia Sexual State of Phyllosticta Wulandari NF1, 2*, Bhat DJ3, and To-Anun C1*
Plant Pathology & Quarantine 4 (1): 45–85 (2014) ISSN 2229-2217 www.ppqjournal.org Article PPQ Copyright © 2014 Online Edition Doi 10.5943/ppq/4/1/6 Redisposition of species from the Guignardia sexual state of Phyllosticta Wulandari NF1, 2*, Bhat DJ3, and To-anun C1* 1Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai, Thailand. 2Microbiology Division, Research Centre for Biology, Indonesian Institute of Sciences (LIPI), Cibinong Science Centre, Cibinong, Indonesia. 3Formerly, Department of Botany, Goa University, Goa-403 206, India Wulandari NF, Bhat DJ and To-anun C. 2014 – Redisposition of species from the Guignardia sexual state of Phyllosticta. Plant Pathology & Quarantine 4(1), 45-85, Doi 10.5943/ppq/4/1/6. Abstract Several species named in the genus “Guignardia” have been transferred to other genera before the commencement of this study. Two families and genera to which species are transferred are Botryosphaeriaceae (Botryosphaeria, Vestergrenia, Neodeightonia) and Hyphonectriaceae (Hyponectria). In this paper, new combinations reported include Botryosphaeria cocöes (Petch) Wulandari, comb. nov., Vestergrenia atropurpurea (Chardón) Wulandari, comb. nov., V. dinochloae (Rehm) Wulandari, comb. nov., V. tetrazygiae (Stevens) Wulandari, comb. nov., while six taxa are synonymized with known species of Phyllosticta, viz. Phyllosticta effusa (Rehm) Sacc.[(= Botryosphaeria obtusae (Schw.) Shoemaker], Phyllosticta sophorae Kantshaveli [= Botryosphaeria ribis Grossenbacher & Duggar], Phyllosticta haydenii (Berk. & M.A. Kurtis) Arx & E. Müller [= Botryosphaeria zeae (Stout) von Arx & E. Müller], Phyllosticta justiciae F. Stevens [= Vestergrenia justiciae (F. Stevens) Petr.], Phyllosticta manokwaria K.D. Hyde [= Neodeightonia palmicola J.K Liu, R. Phookamsak & K. D. Hyde] and Phyllosticta rhamnii Reusser [= Hyponectria cf. -
Phyllosticta Citricarpa
Rodrigues et al. BMC Genomics (2019) 20:554 https://doi.org/10.1186/s12864-019-5911-y RESEARCHARTICLE Open Access Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host Carolina Munari Rodrigues1†, Marco Aurélio Takita1†, Nicholas Vinicius Silva2, Marcelo Ribeiro-Alves3 and Marcos Antonio Machado1* Abstract Background: Citrus are among the most important crops in the world. However, there are many diseases that affect Citrus caused by different pathogens. Citrus also hosts many symbiotic microorganisms in a relationship that may be advantageous for both organisms. The fungi Phyllosticta citricarpa, responsible for citrus black spot, and Phyllosticta capitalensis, an endophytic species, are examples of closely related species with different behavior in citrus. Both species are always biologically associated and are morphologically very similar, and comparing their genomes could help understanding the different lifestyles. In this study, a comparison was carried to identify genetic differences that could help us to understand the biology of P. citricarpa and P. capitalensis. Results: Drafts genomes were assembled with sizes close to 33 Mb for both fungi, carrying 15,206 and 14,797 coding sequences for P. citricarpa and P. capitalensis, respectively. Even though the functional categories of these coding sequences is similar, enrichment analysis showed that the pathogenic species presents growth and development genes that may be necessary for the pathogenicity of P. citricarpa. On the other hand, family expansion analyses showed the plasticity of the genome of these species. Particular families are expanded in the genome of an ancestor of P. capitalensis and a recent expansion can also be detected among this species. -
Taxonomia E Filogenia Molecular De Botryosphaeriales Fitopatogênicos No Brasil, Com Ênfase Na Avaliação De Regiões Gênicas De Cópia Única Para Estudos Filogenéticos
ALEXANDRE REIS MACHADO TAXONOMIA E FILOGENIA MOLECULAR DE BOTRYOSPHAERIALES FITOPATOGÊNICOS NO BRASIL, COM ÊNFASE NA AVALIAÇÃO DE REGIÕES GÊNICAS DE CÓPIA ÚNICA PARA ESTUDOS FILOGENÉTICOS Tese apresentada à Universidade Federal de Viçosa, como parte das exigências do Programa de Pós-Graduação em Fitopatologia, para obtenção do título de Doctor Scientiae. VIÇOSA MINAS GERAIS – BRASIL 2015 Ficha catalográfica preparada pela Biblioteca Central da Universidade Federal de Viçosa - Câmpus Viçosa T Machado, Alexandre Reis, 1986- M149t Taxonomia e filogenia molecular de Botryosphaeriales 2015 fitopatogênicos no Brasil, com ênfase na avaliação de regiões gênicas de cópia única para estudos filogenéticos / Alexandre Reis Machado. – Viçosa, MG, 2015. viii, 101f. : il. (algumas color.) ; 29 cm. Orientador: Olinto Liparini Pereira. Tese (doutorado) - Universidade Federal de Viçosa. Inclui bibliografia. 1. Fungos fitopatogênicos. 2. Filogenia. 3. Lasiodiplodia. 4. Macrophomina. 5. Biologia - Classificação. I. Universidade Federal de Viçosa. Departamento de Fitopatologia. Programa de Pós-graduação em Fitopatologia. II. Título. CDD 22. ed. 632.4 ALEXANDRE REIS MACHADO TAXONOMIA E FILOGENIA MOLECULAR DE BOTRYOSPHAERIALES FITOPATOGÊNICOS NO BRASIL, COM ÊNFASE NA AVALIAÇÃO DE REGIÕES GÊNICAS DE CÓPIA ÚNICA PARA ESTUDOS FILOGENÉTICOS Tese apresentada à Universidade Federal de Viçosa, como parte das exigências do Programa de Pós-Graduação em Fitopatologia, para obtenção do título de Doctor Scientiae. APROVADA: 23 de outubro de 2015. _____________________________ _____________________________ Danilo Batista Pinho Davi Mesquita de Macedo _____________________________ _____________________________ Gleiber Quintão Furtado Tiago de Souza Leite (Coorientador) _____________________________ Olinto Liparini Pereira (Orientador) AGRADECIMENTOS Primeiramente agradeço à Deus pela saúde, pelas oportunidades que surgiram na minha vida, pelas conquistas, por nunca ter me abandonado nas horas difíceis e por ter colocado as pessoas certas no meu caminho. -
First Report of Phyllosticta Citricarpa and Description of Two New Species, P
available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 87: 161–185 (2017). First report of Phyllosticta citricarpa and description of two new species, P. paracapitalensis and P. paracitricarpa, from citrus in Europe V. Guarnaccia1*, J.Z. Groenewald1,H.Li2, C. Glienke3, E. Carstens4,5, V. Hattingh4,6, P.H. Fourie4,5, and P.W. Crous1,7* 1Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT, Utrecht, the Netherlands; 2Institute of Biotechnology, Zhejiang University, Hangzhou, 310058, China; 3Federal University of Parana, Department of Genetics, Curitiba, Parana, Brazil; 4Citrus Research International, P.O. Box 28, Nelspruit, 1200, South Africa; 5Department of Plant Pathology, Stellenbosch University, P. Bag X1, Stellenbosch, 7602, South Africa; 6Department of Horticultural Science, Stellenbosch University, P. Bag X1, Stellenbosch, 7602, South Africa; 7Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, P. Bag X20, Pretoria 0028, South Africa *Correspondence: Vladimiro Guarnaccia, [email protected]; Pedro W. Crous, [email protected] Abstract: The genus Phyllosticta occurs worldwide, and contains numerous plant pathogenic, endophytic and saprobic species. Phyllosticta citricarpa is the causal agent of Citrus Black Spot disease (CBS), affecting fruits and leaves of several citrus hosts (Rutaceae), and can also be isolated from asymptomatic citrus tissues. Citrus Black Spot occurs in citrus-growing regions with warm summer rainfall climates, but is absent in countries of the European Union (EU). Phyllosticta capitalensis is morphologically similar to P. citricarpa, but is a non-pathogenic endophyte, commonly isolated from citrus leaves and fruits and a wide range of other hosts, and is known to occur in Europe. -
Differentiation of Species Complexes in Phyllosticta Enables Better Species Resolution
Mycosphere 11(1): 2542–2628 (2020) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/11/1/16 Differentiation of species complexes in Phyllosticta enables better species resolution Norphanphoun C1,2,3,4, Hongsanan S5, Gentekaki E1,4, Chen YJ1,4, Kuo CH2 and Hyde KD1,3,4* 1Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 2Department of Plant Medicine, National Chiayi University, 300 Syuefu Road, Chiayi City 60004, Taiwan 3Mushroom Research Foundation, 128 M.3 Ban Pa Deng T. Pa Pae, A. Mae Taeng, Chiang Mai 50150, Thailand 4School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand 5Guangdong Provincial Key Laboratory for Plant Epigenetics, Shenzhen Key Laboratory of Microbial Genetic Engineering, College of Life Science and Oceanography, Shenzhen University, Shenzhen 518060, People’s Republic of China Norphanphoun C, Hongsanan S, Gentekaki E, Chen YJ, Kuo CH, Hyde KD 2020 – Differentiation of species complexes in Phyllosticta enables better species resolution. Mycosphere 11(1), 2542– 2628, Doi 10.5943/mycosphere/11/1/16 Abstract Phyllosticta species have worldwide distribution and are pathogens, endophytes, and saprobes. Taxa have also been isolated from leaf spots and black spots of fruits. Taxonomic identification of Phyllosticta species is challenging due to overlapping morphological traits and host associations. Herein, we have assembled a comprehensive dataset and reconstructed a phylogenetic tree. We introduce six species complexes of Phyllosticta to aid the future resolution of species. We also introduce a new species, Phyllosticta rhizophorae isolated from spotted leaves of Rhizophora stylosa in mangrove forests of Taiwan. Phylogenetic analysis based on combined sequence data of ITS, LSU, ef1α, actin and gapdh loci coupled with morphological evidence support the establishment of the new species. -
Phylogenetic Lineages in the Botryosphaeriales: a Systematic and Evolutionary Framework
available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 76: 31–49. Phylogenetic lineages in the Botryosphaeriales: a systematic and evolutionary framework B. Slippers1#*, E. Boissin1,2#, A.J.L. Phillips3, J.Z. Groenewald4, L. Lombard4, M.J. Wingfield1, A. Postma1, T. Burgess5, and P.W. Crous1,4 1Department of Genetics, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0002, South Africa; 2USR3278-Criobe-CNRS-EPHE, Laboratoire d’Excellence “CORAIL”, Université de Perpignan-CBETM, 58 rue Paul Alduy, 66860 Perpignan Cedex, France; 3Centro de Recursos Microbiológicos, Departamento de Ciências da Vida, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516, Caparica, Portugal; 4CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands; 5School of Biological Sciences and Biotechnology, Murdoch University, Perth, Australia *Correspondence: B. Slippers, [email protected] # These authors contributed equally to this paper. Abstract: The order Botryosphaeriales represents several ecologically diverse fungal families that are commonly isolated as endophytes or pathogens from various woody hosts. The taxonomy of members of this order has been strongly influenced by sequence-based phylogenetics, and the abandonment of dual nomenclature. In this study, the phylogenetic relationships of the genera known from culture are evaluated based on DNA sequence data for six loci (SSU, LSU, ITS, EF1, BT, mtSSU). The results make it possible to recognise a total of six families. Other than the Botryosphaeriaceae (17 genera), Phyllostictaceae (Phyllosticta) and Planistromellaceae (Kellermania), newly introduced families include Aplosporellaceae (Aplosporella and Bagnisiella), Melanopsaceae (Melanops), and Saccharataceae (Saccharata). Furthermore, the evolution of morphological characters in the Botryosphaeriaceae were investigated via analysis of phylogeny-trait association. -
Diversity in the Botryosphaeriales: Looking Back, Looking Forward
fungal biology 121 (2017) 307e321 journal homepage: www.elsevier.com/locate/funbio Review Diversity in the Botryosphaeriales: Looking back, looking forward Bernard SLIPPERSa,*, Pedro Willem CROUSb,c, Fahimeh JAMIb, Johannes Zacharias GROENEWALDc, Michael John WINGFIELDa aDepartment of Genetics, Forestry & Agricultural Biotechnology Institute, University of Pretoria, Pretoria, South Africa bDepartment of Microbiology & Plant Pathology, Forestry & Agricultural Biotechnology Institute, University of Pretoria, Pretoria, South Africa cWesterdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands article info abstract Article history: The Botryosphaeriales are amongst the most widespread, common and important fungal Received 6 January 2017 pathogens of woody plants. Many are also known to exist as endophytes in healthy plant Received in revised form tissues. This special issue highlights a number of key themes in the study of this group of 23 February 2017 fungi. In particular, there have been dramatic taxonomic changes over the past decade; Accepted 24 February 2017 from one family to nine (including two in this special issue) and from 10 to 33 genera Available online 27 February 2017 known from culture. It is also clear from many studies that neither morphology nor single Corresponding Editor: locus sequence data are sufficient to define taxa. This problem is exacerbated by the in- Pedro W. Crous creasing recognition of cryptic species and hybrids (as highlighted for the first time in this special issue). It is futile that management strategies, including quarantine, continue Keywords: to rely on outdated taxonomic definitions and identification tools. This is especially true in Dothideomycetes light of growing evidence that many species continue to be moved globally as endophytes Endophyte in plants and plant products. -
Evaluating Species in <I> Botryosphaeriales</I>
Persoonia 46, 2021: 63–115 ISSN (Online) 1878-9080 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE https://doi.org/10.3767/persoonia.2021.46.03 Evaluating species in Botryosphaeriales W. Zhang1, J.Z. Groenewald2, L. Lombard2, R.K. Schumacher 3, A.J.L. Phillips4, P.W. Crous2,5,* Key words Abstract The Botryosphaeriales (Dothideomycetes) includes numerous endophytic, saprobic, and plant pathogenic species associated with a wide range of symptoms, most commonly on woody plants. In a recent phylogenetic canker and leaf spot pathogens treatment of 499 isolates in the culture collection (CBS) of the Westerdijk Institute, we evaluated the families and Multi-Locus Sequence Typing (MLST) genera accommodated in this order of important fungi. The present study presents multigene phylogenetic analyses new taxa for an additional 230 isolates, using ITS, tef1, tub2, LSU and rpb2 loci, in combination with morphological data. systematics Based on these data, 58 species are reduced to synonymy, and eight novel species are described. They include Diplodia afrocarpi (Afrocarpus, South Africa), Dothiorella diospyricola (Diospyros, South Africa), Lasiodiplodia acaciae (Acacia, Indonesia), Neofusicoccum podocarpi (Podocarpus, South Africa), N. rapaneae (Rapanea, South Africa), Phaeobotryon ulmi (Ulmus, Germany), Saccharata grevilleae (Grevillea, Australia) and S. hakeiphila (Hakea, Australia). The results have clarified the identity of numerous isolates that lacked Latin binomials or had been deposited under incorrect names in the CBS collection in the past. They also provide a solid foundation for more in-depth future studies on taxa in the order. Sequences of the tef1, tub2 and rpb2 genes proved to be the most reliable markers. At the species level, results showed that the most informative genes were inconsistent, but that a combination of four candidate barcodes (ITS, tef1, tub2 and rpb2) provided reliable resolution. -
Phylogenetic Lineages in the Botryosphaeriales: a Systematic and Evolutionary Framework
available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 76: 31–49. Phylogenetic lineages in the Botryosphaeriales: a systematic and evolutionary framework B. Slippers1#*, E. Boissin1,2#, A.J.L. Phillips3, J.Z. Groenewald4, L. Lombard4, M.J. Wingfield1, A. Postma1, T. Burgess5, and P.W. Crous1,4 1Department of Genetics, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0002, South Africa; 2USR3278-Criobe-CNRS-EPHE, Laboratoire d’Excellence “CORAIL”, Université de Perpignan-CBETM, 58 rue Paul Alduy, 66860 Perpignan Cedex, France; 3Centro de Recursos Microbiológicos, Departamento de Ciências da Vida, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516, Caparica, Portugal; 4CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands; 5School of Biological Sciences and Biotechnology, Murdoch University, Perth, Australia *Correspondence: B. Slippers, [email protected] # These authors contributed equally to this paper. Abstract: The order Botryosphaeriales represents several ecologically diverse fungal families that are commonly isolated as endophytes or pathogens from various woody hosts. The taxonomy of members of this order has been strongly influenced by sequence-based phylogenetics, and the abandonment of dual nomenclature. In this study, the phylogenetic relationships of the genera known from culture are evaluated based on DNA sequence data for six loci (SSU, LSU, ITS, EF1, BT, mtSSU). The results make it possible to recognise a total of six families. Other than the Botryosphaeriaceae (17 genera), Phyllostictaceae (Phyllosticta) and Planistromellaceae (Kellermania), newly introduced families include Aplosporellaceae (Aplosporella and Bagnisiella), Melanopsaceae (Melanops), and Saccharataceae (Saccharata). Furthermore, the evolution of morphological characters in the Botryosphaeriaceae were investigated via analysis of phylogeny-trait association. -
Phyllosticta Citricarpa (Mcalpine) Van Der Aa 1973
-- CALIFORNIA D EPAUMENT OF cdfa FOOD & AGRICULTURE ~ California Pest Rating Proposal for Phyllosticta citricarpa (McAlpine) Van der Aa 1973 (teleomorph Guignardia citricarpa Kiely 1948) Citrus black spot Current Pest Rating: None Proposed Pest Rating: A Kingdom Fungi, Phylum: Ascomycota, Subphylum: Pezizomycotina, Class: Dothideomycetes, Order: Botryosphaeriales, Family: Phyllostictaceae Comment Period: 05/19/2021 through 07/03/2021 Initiating Event: This pathogen has not been through the pest rating process. The risk to California from citrus black spot (CBS) caused by Phyllosticta citricarpa is described herein and a permanent pest rating is proposed. History & Status: Background: Citrus black spot disease was first described in Australia by Kiely in 1950. By the late 1970s it was established in Southern Africa and described by Kotze (1981) as an “epidemic and a major crop destroyer” in the humid coastal regions of the Southern Hemisphere. He predicted that should the disease become established in the United States, Florida would be vulnerable to similar epidemics because of its climate. While the entire plant can be asymptomatically infected, symptom development primarily occurs on the fruit. Infected fruit develops unsightly dark lesions on the rind, which reduce the fresh market crop value. Severe infection may cause fruit drop, but rarely does it cause internal post-harvest decay, even if the rind becomes necrotized. Fruit can asymptomatic at harvest, but latent infections may cause rind symptoms to appear during transport or storage (Kotzé, 2000). The majority of commercially grown citrus such as lemons, grapefruit, and oranges are susceptible to citrus black spot. International spread -- CALIFORNIA D EPAUMENT OF cdfa FOOD & AGRICULTURE ~ is assumed to have taken place mainly through the movement of infected plants for planting, rather than with infected fruit (Baayen et al., 2009).