Domain Requires the Gab2 Pleckstrin Homology Negative Regulation Of
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Deregulated Gene Expression Pathways in Myelodysplastic Syndrome Hematopoietic Stem Cells
Leukemia (2010) 24, 756–764 & 2010 Macmillan Publishers Limited All rights reserved 0887-6924/10 $32.00 www.nature.com/leu ORIGINAL ARTICLE Deregulated gene expression pathways in myelodysplastic syndrome hematopoietic stem cells A Pellagatti1, M Cazzola2, A Giagounidis3, J Perry1, L Malcovati2, MG Della Porta2,MJa¨dersten4, S Killick5, A Verma6, CJ Norbury7, E Hellstro¨m-Lindberg4, JS Wainscoat1 and J Boultwood1 1LRF Molecular Haematology Unit, NDCLS, John Radcliffe Hospital, Oxford, UK; 2Department of Hematology Oncology, University of Pavia Medical School, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy; 3Medizinische Klinik II, St Johannes Hospital, Duisburg, Germany; 4Division of Hematology, Department of Medicine, Karolinska Institutet, Stockholm, Sweden; 5Department of Haematology, Royal Bournemouth Hospital, Bournemouth, UK; 6Albert Einstein College of Medicine, Bronx, NY, USA and 7Sir William Dunn School of Pathology, University of Oxford, Oxford, UK To gain insight into the molecular pathogenesis of the the World Health Organization.6,7 Patients with refractory myelodysplastic syndromes (MDS), we performed global gene anemia (RA) with or without ringed sideroblasts, according to expression profiling and pathway analysis on the hemato- poietic stem cells (HSC) of 183 MDS patients as compared with the the French–American–British classification, were subdivided HSC of 17 healthy controls. The most significantly deregulated based on the presence or absence of multilineage dysplasia. In pathways in MDS include interferon signaling, thrombopoietin addition, patients with RA with excess blasts (RAEB) were signaling and the Wnt pathways. Among the most signifi- subdivided into two categories, RAEB1 and RAEB2, based on the cantly deregulated gene pathways in early MDS are immuno- percentage of bone marrow blasts. -
The Proximal Signaling Network of the BCR-ABL1 Oncogene Shows a Modular Organization
Oncogene (2010) 29, 5895–5910 & 2010 Macmillan Publishers Limited All rights reserved 0950-9232/10 www.nature.com/onc ORIGINAL ARTICLE The proximal signaling network of the BCR-ABL1 oncogene shows a modular organization B Titz, T Low, E Komisopoulou, SS Chen, L Rubbi and TG Graeber Crump Institute for Molecular Imaging, Institute for Molecular Medicine, Jonsson Comprehensive Cancer Center, California NanoSystems Institute, Department of Molecular and Medical Pharmacology, University of California, Los Angeles, CA, USA BCR-ABL1 is a fusion tyrosine kinase, which causes signaling effects of BCR-ABL1 toward leukemic multiple types of leukemia. We used an integrated transformation. proteomic approach that includes label-free quantitative Oncogene (2010) 29, 5895–5910; doi:10.1038/onc.2010.331; protein complex and phosphorylation profiling by mass published online 9 August 2010 spectrometry to systematically characterize the proximal signaling network of this oncogenic kinase. The proximal Keywords: adaptor protein; BCR-ABL1; phospho- BCR-ABL1 signaling network shows a modular and complex; quantitative mass spectrometry; signaling layered organization with an inner core of three leukemia network; systems biology transformation-relevant adaptor protein complexes (Grb2/Gab2/Shc1 complex, CrkI complex and Dok1/ Dok2 complex). We introduced an ‘interaction direction- ality’ analysis, which annotates static protein networks Introduction with information on the directionality of phosphorylation- dependent interactions. In this analysis, the observed BCR-ABL1 is a constitutively active oncogenic fusion network structure was consistent with a step-wise kinase that arises through a chromosomal translocation phosphorylation-dependent assembly of the Grb2/Gab2/ and causes multiple types of leukemia. It is found in Shc1 and the Dok1/Dok2 complexes on the BCR-ABL1 many cases (B25%) of adult acute lymphoblastic core. -
1 Validating Predicted Biological Effects of Alzheimer's Disease
Journal of Alzheimer’s Disease ISSN: 1387-2877 IOS Press DOI: 10.3233/JAD-2010-091711 Validating Predicted Biological Effects of Alzheimer’s Disease Associated SNPs Using CSF Biomarker Levels John S.K. Kauwea,*, Carlos Cruchagab,*, Sarah Bertelsenb, Kevin Mayob, Wayne Latua, Petra Nowotnyb, Anthony L. Hinrichsb, Anne M. Faganc, David M. Holtzmanc, Alzheimer’s Disease Neuroimaging Initiative** and Alison M. Goateb aDepartment of Biology, Brigham Young University, Provo, UT, USA bDepartment of Psychiatry, Washington University School of Medicine, St. Louis, MO, USA cDepartment of Neurology, Washington University School of Medicine, St. Louis, MO, USA *Co-first authors with equal contributions. Running Title: Validating effects of AD risk variants Handling Associate Editor: Daniela Galimberti Accepted 16 April 2010 Correspondence to: Alison M. Goate, PhD, Samuel & Mae S. Ludwig Professor, Department of Psychiatry, Washington University School of Medicine, St. Louis, Missouri 63110, USA; Tel: +1 314-362-8691, Fax: +1 314-747-2983, Email: [email protected]. 1 **Some of the data used in the preparation of this article were obtained from the Alzheimer’s Disease Neuroimaging Initiative (ADNI) database (http://www.loni.ucla.edu\ADNI). As such, the investigators within the ADNI contributed to the design and implementation of ADNI and/or provided data but did not participate in analysis or writing of this report. ADNI investigators include (complete listing available at http://www.loni.ucla.edu/ADNI/About/About_Investigators.shtml). 2 ABSTRACT Recent large-scale genetic studies of late-onset Alzheimer’s disease have identified risk variants in CALHM1, GAB2, and SORL1. The mechanisms by which these genes might modulate risk are not definitively known. -
Time Resolved Quantitative Phosphoproteomics Reveals Distinct Patterns of SHP2
bioRxiv preprint doi: https://doi.org/10.1101/598664; this version posted April 12, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Time resolved quantitative phosphoproteomics reveals distinct patterns of SHP2 dependence in EGFR signaling Vidyasiri Vemulapalli1,2, Lily Chylek3, Alison Erickson4, Jonathan LaRochelle1,2, Kartik Subramanian3, Morvarid Mohseni5, Matthew LaMarche5, Michael G. Acker5, Peter K. Sorger3, Steven P. Gygi4, and Stephen C. Blacklow1,2* 1Department of Cancer Biology, Dana-Farber Cancer Institute Boston, MA 02115, USA 2Department of Biological Chemistry & Molecular Pharmacology, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA 3Laboratory of Systems Pharmacology, Harvard Medical School, Boston, MA 02115, USA 4Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA 5Novartis Institutes for Biomedical Research, Cambridge, MA, 02139, USA *To whom correspondence should be addressed: [email protected] bioRxiv preprint doi: https://doi.org/10.1101/598664; this version posted April 12, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract SHP2 is a protein tyrosine phosphatase that normally potentiates intracellular signaling by growth factors, antigen receptors, and some cytokines; it is frequently mutated in childhood leukemias and other cancers. Here, we examine the role of SHP2 in the responses of breast cancer cells to EGF by monitoring phosphoproteome dynamics when SHP2 is allosterically inhibited by the small molecule SHP099. -
Structure and Function of Gab2 and Its Role in Cancer (Review)
MOLECULAR MEDICINE REPORTS 12: 4007-4014, 2015 Structure and function of Gab2 and its role in cancer (Review) CHEN-BO DING1, WEI-NA YU1, JI-HONG FENG2 and JUN-MIN LUO1 1Department of Immunology and Immunology Innovation Base for Postgraduate Education in Guizhou Province, Zunyi Medical University; 2Department of Oncology, Affiliated Hospital of Zunyi Medical University, Zunyi, Guizhou 563099, P.R. China Received September 11, 2014; Accepted May 19, 2015 DOI: 10.3892/mmr.2015.3951 Abstract. The docking proteins of the Grb-associated binder 1. Introduction (Gab) family transduce cellular signals between receptors and intracellular downstream effectors, and provide a platform Gab2 belongs to the Grb-associated binder (Gab) family of for protein-protein interactions. Gab2, a key member of the docking proteins, which also includes mammalian Gab1, Gab family of proteins, is involved in the amplification and Gab3 and Gab4, Drosophila daughter of sevenless, and integration of signal transduction, evoked by a variety of Caenorhabditis elegans suppressor of Clr-1 (1). Gab2 is extracellular stimuli, including growth factors, cytokines reported to contain a pleckstrin homology (PH) domain at and antigen receptors. Gab2 protein lacks intrinsic catalytic the N-terminus, several proline-rich motifs (PXXP) and activity; however, when phosphorylated by protein-tyrosine multiple tyrosine residues, which couple with SH2-containing kinases (PTKs), Gab2 recruits several Src homology-2 (SH2) molecules in a phosphorylation-dependent manner (1,2). The domain-containing proteins, including the SH2-containing Gab2 PH domain preferentially combines phosphatidylino- protein tyrosine phosphatase 2 (SHP2), the p85 subunit of sitol 3,4,5-P3 (PIP3) (3). In Gab2, two of the proline-rich motifs phosphoinositide-3 kinase (PI3K), phospholipase C-γ (PLCγ)1, are Grb2-Src homology (SH3) domain binding sites (4), which Crk, and GC-GAP. -
Digital Gene Expression Profiling of Primary Acute Lymphoblastic
Leukemia (2012) 26, 1218 --1227 & 2012 Macmillan Publishers Limited All rights reserved 0887-6924/12 www.nature.com/leu ORIGINAL ARTICLE Digital gene expression profiling of primary acute lymphoblastic leukemia cells J Nordlund1, A Kiialainen1,9, O Karlberg1, EC Berglund1,HGo¨ ransson-Kultima2, M Sønderkær3, KL Nielsen3, MG Gustafsson2, M Behrendtz4, E Forestier5, M Perkkio¨ 6,SSo¨ derha¨ll7,GLo¨ nnerholm8 and A-C Syva¨nen1 We determined the genome-wide digital gene expression (DGE) profiles of primary acute lymphoblastic leukemia (ALL) cells from 21 patients taking advantage of ‘second-generation’ sequencing technology. Patients included in this study represent four cytogenetically distinct subtypes of B-cell precursor (BCP) ALL and T-cell lineage ALL (T-ALL). The robustness of DGE combined with supervised classification by nearest shrunken centroids (NSC) was validated experimentally and by comparison with published expression data for large sets of ALL samples. Genes that were differentially expressed between BCP ALL subtypes were enriched to distinct signaling pathways with dic(9;20) enriched to TP53 signaling, t(9;22) to interferon signaling, as well as high hyperdiploidy and t(12;21) to apoptosis signaling. We also observed antisense tags expressed from the non-coding strand of B50% of annotated genes, many of which were expressed in a subtype-specific pattern. Antisense tags from 17 gene regions unambiguously discriminated between the BCP ALL and T-ALL subtypes, and antisense tags from 76 gene regions discriminated between the 4 BCP subtypes. We observed a significant overlap of gene regions with alternative polyadenylation and antisense transcription (Po1 Â 10À15). Our study using DGE profiling provided new insights into the RNA expression patterns in ALL cells. -
The Proto-Oncogene C-Cbl Is a Positive Regulator of Met-Induced MAP Kinase Activation: a Role for the Adaptor Protein Crk
Oncogene (2000) 19, 4058 ± 4065 ã 2000 Macmillan Publishers Ltd All rights reserved 0950 ± 9232/00 $15.00 www.nature.com/onc SHORT REPORT The proto-oncogene c-Cbl is a positive regulator of Met-induced MAP kinase activation: a role for the adaptor protein Crk Miguel Garcia-Guzman1, Elise Larsen1 and Kristiina Vuori*,1 1Cancer Research Center, The Burnham Institute, 10901 North Torrey Pines Road, La Jolla, California, CA 92037, USA Hepatocyte growth factor triggers a complex biological (Cooper et al., 1984; Park et al., 1986; Rodrigues and program leading to invasive cell growth by activating the Park, 1993). c-Met receptor tyrosine kinase. Following activation, The cytoplasmic domain of Met contains two Met signaling is elicited via its interactions with SH2- autophosphorylation tyrosine residues, tyrosines 1349 containing proteins, or via the phosphorylation of the and 1356, which form a multi-substrate binding site for docking protein Gab1, and the subsequent interaction of several SH2-domain-containing cytoplasmic eectors Gab1 with additional SH2-containing eector molecules. and are thought to be crucial for Met-induced We have previously shown that the interaction between biological signaling (Ponzetto et al., 1994; Weidner et phosphorylated Gab1 and the adaptor protein Crk al., 1995; Zhu et al., 1994). In addition to the mediates activation of the JNK pathway downstream numerous SH2-containing molecules, the 110-kDa of Met. We report here that c-Cbl, which is a Gab1-like docking protein Gab1 also interacts with the activated docking protein, also becomes tyrosine-phosphorylated in Met receptor, either directly or indirectly via the response to Met activation and serves as a docking adaptor protein Grb2 (Fixman et al., 1997; Nguyen molecule for various SH2-containing molecules, includ- et al., 1997; Weidner et al., 1996). -
Review Article Potential Peripheral Biomarkers for the Diagnosis of Alzheimer’S Disease
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Crossref SAGE-Hindawi Access to Research International Journal of Alzheimer’s Disease Volume 2011, Article ID 572495, 9 pages doi:10.4061/2011/572495 Review Article Potential Peripheral Biomarkers for the Diagnosis of Alzheimer’s Disease Seema Patel, Raj J. Shah, Paul Coleman, and Marwan Sabbagh Banner Sun Health Research Institute, Sun City, AZ 85351, USA Correspondence should be addressed to Marwan Sabbagh, [email protected] Received 10 January 2011; Revised 17 August 2011; Accepted 25 August 2011 Academic Editor: Holly Soares Copyright © 2011 Seema Patel et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Advances in the discovery of a peripheral biomarker for the diagnosis of Alzheimer’s would provide a way to better detect the onset of this debilitating disease in a manner that is both noninvasive and universally available. This paper examines the current approaches that are being used to discover potential biomarker candidates available in the periphery. The search for a peripheral biomarker that could be utilized diagnostically has resulted in an extensive amount of studies that employ several biological approaches, including the assessment of tissues, genomics, proteomics, epigenetics, and metabolomics. Although a definitive biomarker has yet to be confirmed, advances in the understanding of the mechanisms of the disease and major susceptibility factors have been uncovered and reveal promising possibilities for the future discovery of a useful biomarker. -
Allostery Mediates Ligand Binding to Grb2 Adaptor in a Mutually Exclusive Manner Caleb B
Research Article Received: 20 August 2012, Revised: 01 October 2012, Accepted: 12 November 2012, Published online in Wiley Online Library: 2012 (wileyonlinelibrary.com) DOI: 10.1002/jmr.2256 Allostery mediates ligand binding to Grb2 adaptor in a mutually exclusive manner Caleb B. McDonald, Jimmy El Hokayem, Nawal Zafar, Jordan E. Balke, Vikas Bhat, David C. Mikles, Brian J. Deegan, Kenneth L. Seldeen and Amjad Farooq* Allostery plays a key role in dictating the stoichiometry and thermodynamics of multi-protein complexes driving a plethora of cellular processes central to health and disease. Herein, using various biophysical tools, we demonstrate that although Sos1 nucleotide exchange factor and Gab1 docking protein recognize two non-overlapping sites within the Grb2 adaptor, allostery promotes the formation of two distinct pools of Grb2–Sos1 and Grb2–Gab1 binary signaling complexes in concert in lieu of a composite Sos1–Grb2–Gab1 ternary complex. Of particular interest is the observation that the binding of Sos1 to the nSH3 domain within Grb2 sterically blocks the binding of Gab1 to the cSH3 domain and vice versa in a mutually exclusive manner. Importantly, the formation of both the Grb2–Sos1 and Grb2–Gab1 binary complexes is governed by a stoichiometry of 2:1, whereby the respective SH3 domains within Grb2 homodimer bind to Sos1 and Gab1 via multivalent interactions. Collectively, our study sheds new light on the role of allostery in mediating cellular signaling machinery. Copyright © 2013 John Wiley & Sons, Ltd. Keywords: Multivalent -
FGFR1 (Phospho-Tyr654) Antibody
Product Datasheet FGFR1 (Phospho-Tyr654) Antibody Catalog No: #12014 Package Size: #12014-1 50ul #12014-2 100ul Orders: [email protected] Support: [email protected] Description Product Name FGFR1 (Phospho-Tyr654) Antibody Host Species Rabbit Clonality Polyclonal Purification Antibodies were produced by immunizing rabbits with synthetic phosphopeptide and KLH conjugates. Antibodies were purified by affinity-chromatography using epitope-specific phosphopeptide. Non-phospho specific antibodies were removed by chromatogramphy using non-phosphopeptide. Applications WB Species Reactivity Hu Ms Rt Specificity The antibody detects endogenous level of FGFR1 only when phosphorylated at Tyrosine 654. Immunogen Type Peptide-KLH Immunogen Description Peptide sequence around phosphorylation site of Tyrosine 654 (D-Y-Y(p)-K-K) derived from Human FGFR1. Target Name FGFR1 Modification Phospho Other Names CEK, FLG, HH2, OGD, FLT2 Accession No. Swiss-Prot#: P11362; NCBI Gene#: 2260; NCBI Protein#: NP_001167534.1 SDS-PAGE MW 120kd Concentration 1.0mg/ml Formulation Supplied at 1.0mg/mL in phosphate buffered saline (without Mg2+ and Ca2+), pH 7.4, 150mM NaCl, 0.02% sodium azide and 50% glycerol. Storage Store at -20°C/1 year Application Details Predicted MW: 120kd Western blotting: 1:500~1:1000 Images Western blot analysis of extracts from 293 cells treated with insulin using FGFR1 (Phospho-Tyr654) Antibody #12014.The lane on the right is treated with the antigen-specific peptide. Address: 8400 Baltimore Ave., Suite 302, College Park, MD 20740, USA http://www.sabbiotech.com 1 Background Tyrosine-protein kinase that acts as cell-surface receptor for fibroblast growth factors and plays an essential role in the regulation of embryonic development, cell proliferation, differentiation and migration. -
Gab2 and Src Co-Operate in Human Mammary Epithelial Cells to Promote Growth Factor Independence and Disruption of Acinar Morphogenesis
Oncogene (2008) 27, 2693–2704 & 2008 Nature Publishing Group All rights reserved 0950-9232/08 $30.00 www.nature.com/onc ORIGINAL ARTICLE Gab2 and Src co-operate in human mammary epithelial cells to promote growth factor independence and disruption of acinar morphogenesis HL Bennett1, T Brummer1, A Jeanes2, AS Yap2 and RJ Daly1 1Cancer Research Program, Garvan Institute of Medical Research, Sydney, NSW, Australia and 2Institute for Molecular Bioscience, Queensland Bioscience Precinct, University of Queensland, Queensland, Australia The Gab2 docking protein is a target of several oncogenic Introduction protein tyrosine kinases and potentiates activation of the Ras/extracellular signal regulated kinase and phosphati- The docking protein Grb2-associated binder (Gab)2 is dylinositol 3-kinase (PI3-kinase) pathways. Since Gab2 is recruited and tyrosine phosphorylated following activa- phosphorylated by c-Src, and both proteins are over- tion of diverse receptor types, including specific receptor expressed in breast cancers, we have determined the tyrosine kinases (RTKs), B- and T-cell antigen receptors, biological consequences of their co-expression in the RANK and b1-integrin (Nishida et al., 1999; Yu et al., immortalized human mammary epithelial cell line MCF- 2002; Wada et al., 2005). Once phosphorylated, Gab2 10A. While overexpression of c-Src did not affect acinar binds several effectors, including the protein tyrosine morphogenesis or growth factor dependence in three- phosphatase Shp2 and the p85 subunit of phosphatidy- dimensional culture, c-Src co-operated with Gab2 to linositol 3-kinase (PI3-kinase). Association with the latter promote epidermal growth factor (EGF)-independent two proteins potentiates Ras/extracellular signal regu- acinar growth. -
Review Article Gab Adapter Proteins As Therapeutic Targets for Hematologic Disease
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Crossref Hindawi Publishing Corporation Advances in Hematology Volume 2012, Article ID 380635, 10 pages doi:10.1155/2012/380635 Review Article Gab Adapter Proteins as Therapeutic Targets for Hematologic Disease Sheetal Verma,1 Tamisha Vaughan,1 and Kevin D. Bunting1, 2 1 Aflac Cancer Center of Children’s Healthcare of Atlanta, Department of Pediatrics, Emory University, Atlanta, GA 30322, USA 2 Aflac Cancer Center and Blood Disorders Service, Division of Hematology-Oncology, Department of Pediatrics, Emory University School of Medicine, 2015 Uppergate Drive NE, ECC 444, Atlanta, GA 30322, USA Correspondence should be addressed to Kevin D. Bunting, [email protected] Received 14 June 2011; Revised 30 August 2011; Accepted 6 September 2011 Academic Editor: Cheng-Kui Qu Copyright © 2012 Sheetal Verma et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The Grb-2 associated binder (Gab) family of scaffolding/adaptor/docking proteins is a group of three molecules with significant roles in cytokine receptor signaling. Gabs possess structural motifs for phosphorylation-dependent receptor recruitment, Grb2 binding, and activation of downstream signaling pathways through p85 and SHP-2. In addition, Gabs participate in hematopoiesis and regulation of immune response which can be aberrantly activated in cancer and inflammation. The multifunctionality of Gab adapters might suggest that they would be too difficult to consider as candidates for “targeted” therapy. However, the one drug/one target approach is giving way to the concept of one drug/multiple target approach since few cancers are addicted to a single signaling molecule for survival and combination drug therapies can be problematic.