Therapeutic Strategies Targeting DUX4 in FSHD
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DUX4, a Zygotic Genome Activator, Is Involved in Oncogenesis and Genetic Diseases Anna Karpukhina, Yegor Vassetzky
DUX4, a Zygotic Genome Activator, Is Involved in Oncogenesis and Genetic Diseases Anna Karpukhina, Yegor Vassetzky To cite this version: Anna Karpukhina, Yegor Vassetzky. DUX4, a Zygotic Genome Activator, Is Involved in Onco- genesis and Genetic Diseases. Ontogenez / Russian Journal of Developmental Biology, MAIK Nauka/Interperiodica, 2020, 51 (3), pp.176-182. 10.1134/S1062360420030078. hal-02988675 HAL Id: hal-02988675 https://hal.archives-ouvertes.fr/hal-02988675 Submitted on 17 Nov 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. ISSN 1062-3604, Russian Journal of Developmental Biology, 2020, Vol. 51, No. 3, pp. 176–182. © Pleiades Publishing, Inc., 2020. Published in Russian in Ontogenez, 2020, Vol. 51, No. 3, pp. 210–217. REVIEWS DUX4, a Zygotic Genome Activator, Is Involved in Oncogenesis and Genetic Diseases Anna Karpukhinaa, b, c, d and Yegor Vassetzkya, b, * aCNRS UMR9018, Université Paris-Sud Paris-Saclay, Institut Gustave Roussy, Villejuif, F-94805 France bKoltzov Institute of Developmental Biology of the Russian Academy of Sciences, -
Neuromuscular Disease Journal Article on IRC 2019
Available online at www.sciencedirect.com Neuromuscular Disorders 29 (2019) 811–817 www.elsevier.com/locate/nmd Research conference report 26th Annual Facioscapulohumeral Dystrophy International Research Congress Marseille, France, 19–20 June 2019 a b, ∗ c June Kinoshita , Frédérique Magdinier , George W. Padberg a FSHD Society, 450 Bedford Street, Lexington, MA, USA b Aix Marseille Univ, INSERM, MMG, Marseille Medical Genetics, Marseille, France c Radboud UMC, Nijmegen, The Netherlands Received 2 August 2019 1. Introduction In the welcome session, Mark Stone, CEO of the FSHD Society, summarized the international patient advocacy group Research in Facioscapulohumeral Muscular Dystrophy meeting that was held on the previous day (June 18), which (FSHD) has reached the stage where we are seeing the gathered representatives of patients associations from six first drug trials aiming at reduction of its pathological gene European countries as well as Brazil, China, Israel, Japan, product DUX4. Driven by this development and by increased and the United States. international collaboration on translational research and trial preparedness, the FSHD Society has decided to hold its 2. Plenary and keynote lectures annual International Research Conference (IRC) alternating between the USA and in Europe, beginning this year with the The meeting opened with a plenary session aimed at 26th IRC held in Marseille, France. The meeting occurred on presenting the condition from the point of view of affected 19–20 June, 2019, at the Palais du Pharo, a historical palace individuals. A 10-min video gave an intimate look into the built in the second half of the 19th century by Napoleon III life of Pierre Laurian. -
2021 IRC Abstract Book
ABSTRACT BOOK THANK YOU TO OUR SPONSORS S = session; P = poster; author in bold = presenting author Page | 2 SPEAKER PRESENTATIONS DAY 1 – THURSDAY, JUNE 24, 2021 . Discovery Research S1.100 Transient DUX4 expression provokes long-lasting cellular and molecular muscle alterations Darko Bosnakovski, Ahmed Shams, Madison Douglas, Natalie Xu, Christian Palumbo, David Oyler, Elizabeth Ener, Daniel Chi, Erik Toso, Michael Kyba S1.101 Identification of the first endogenous inhibitor of DUX4 in FSHD muscular dystrophy Paola Ghezzi, Valeria Runfola, Maria Pannese, Claudia Caronni, Roberto Giambruno, Annapaola Andolfo, Davide Gabellini S1.102 Use of snRNA-seq to characterize the skeletal muscle microenvironment during pathogenesis in FSHD Anugraha Raman, Anthony Accorsi, Michelle Mellion, Bobby Riehle, Lucienne Ronco, L. Alejandro Rojas, Christopher Moxham . Genetics & Epigenetics S2.200 Identification of a druggable epigenetic target required for DUX4 expression and DUX4-mediated toxicity in FSHD muscular dystrophy Emanuele Mocciaro, Roberto Giambruno, Stefano Micheloni, Cristina Consonni, Maria Pannese, Valeria Runfola, Giulia Ferri, Davide Gabellini S2.201 Accessing D4Z4 (epi)genetics with long-read sequencing Quentin Gouil, Ayush Semwal, Frédérique Magdinier, Marnie Blewitt . Pathology & Disease Mechanisms S3.300 System biology approach links muscle weakening to alteration of the contractile apparatus in FSHD Camille Laberthonnière, Megane Delourme, Raphael Chevalier, Elva-Maria Novoa-del-Toro, Emmanuelle Salort Campana, Shahram Attarian, -
FSHD Region Gene 1 (FRG1) Is Crucial for Angiogenesis Linking FRG1 to Facioscapulohumeral Muscular Dystrophy-Associated Vasculopathy
University of Massachusetts Medical School eScholarship@UMMS Peter Jones Lab Publications Cell and Developmental Biology Laboratories 2009-05-01 FSHD region gene 1 (FRG1) is crucial for angiogenesis linking FRG1 to facioscapulohumeral muscular dystrophy-associated vasculopathy Ryan Wuebbles University of Illinois at Urbana-Champaign Et al. Let us know how access to this document benefits ou.y Follow this and additional works at: https://escholarship.umassmed.edu/peterjones Part of the Cell Biology Commons, Developmental Biology Commons, Molecular Biology Commons, Molecular Genetics Commons, Musculoskeletal Diseases Commons, and the Nervous System Diseases Commons Repository Citation Wuebbles R, Hanel ML, Jones PL. (2009). FSHD region gene 1 (FRG1) is crucial for angiogenesis linking FRG1 to facioscapulohumeral muscular dystrophy-associated vasculopathy. Peter Jones Lab Publications. https://doi.org/10.1242/dmm.002261. Retrieved from https://escholarship.umassmed.edu/ peterjones/11 Creative Commons License This work is licensed under a Creative Commons Attribution 3.0 License. This material is brought to you by eScholarship@UMMS. It has been accepted for inclusion in Peter Jones Lab Publications by an authorized administrator of eScholarship@UMMS. For more information, please contact [email protected]. Disease Models & Mechanisms 2, 267-274 (2009) doi:10.1242/dmm.002261 RESEARCH ARTICLE FSHD region gene 1 (FRG1) is crucial for angiogenesis linking FRG1 to facioscapulohumeral muscular dystrophy-associated vasculopathy Ryan D. Wuebbles1,*, Meredith L. Hanel1,* and Peter L. Jones1,‡ SUMMARY The genetic lesion that is diagnostic for facioscapulohumeral muscular dystrophy (FSHD) results in an epigenetic misregulation of gene expression, which ultimately leads to the disease pathology. FRG1 (FSHD region gene 1) is a leading candidate for a gene whose misexpression might lead to FSHD. -
Gene Expression During Normal and FSHD Myogenesis Tsumagari Et Al
Gene expression during normal and FSHD myogenesis Tsumagari et al. Tsumagari et al. BMC Medical Genomics 2011, 4:67 http://www.biomedcentral.com/1755-8794/4/67 (27 September 2011) Tsumagari et al. BMC Medical Genomics 2011, 4:67 http://www.biomedcentral.com/1755-8794/4/67 RESEARCHARTICLE Open Access Gene expression during normal and FSHD myogenesis Koji Tsumagari1, Shao-Chi Chang1, Michelle Lacey2,3, Carl Baribault2,3, Sridar V Chittur4, Janet Sowden5, Rabi Tawil5, Gregory E Crawford6 and Melanie Ehrlich1,3* Abstract Background: Facioscapulohumeral muscular dystrophy (FSHD) is a dominant disease linked to contraction of an array of tandem 3.3-kb repeats (D4Z4) at 4q35. Within each repeat unit is a gene, DUX4, that can encode a protein containing two homeodomains. A DUX4 transcript derived from the last repeat unit in a contracted array is associated with pathogenesis but it is unclear how. Methods: Using exon-based microarrays, the expression profiles of myogenic precursor cells were determined. Both undifferentiated myoblasts and myoblasts differentiated to myotubes derived from FSHD patients and controls were studied after immunocytochemical verification of the quality of the cultures. To further our understanding of FSHD and normal myogenesis, the expression profiles obtained were compared to those of 19 non-muscle cell types analyzed by identical methods. Results: Many of the ~17,000 examined genes were differentially expressed (> 2-fold, p < 0.01) in control myoblasts or myotubes vs. non-muscle cells (2185 and 3006, respectively) or in FSHD vs. control myoblasts or myotubes (295 and 797, respectively). Surprisingly, despite the morphologically normal differentiation of FSHD myoblasts to myotubes, most of the disease-related dysregulation was seen as dampening of normal myogenesis- specific expression changes, including in genes for muscle structure, mitochondrial function, stress responses, and signal transduction. -
The Role of Long Non-Coding Rnas in the Pathogenesis of Hereditary Diseases Peter Sparber1*, Alexandra Filatova1, Mira Khantemirova2,3 and Mikhail Skoblov1,4
Sparber et al. BMC Medical Genomics 2019, 12(Suppl 2):42 https://doi.org/10.1186/s12920-019-0487-6 REVIEW Open Access The role of long non-coding RNAs in the pathogenesis of hereditary diseases Peter Sparber1*, Alexandra Filatova1, Mira Khantemirova2,3 and Mikhail Skoblov1,4 From 11th International Multiconference “Bioinformatics of Genome Regulation and Structure\Systems Biology” - BGRS\SB- 2018 Novosibirsk, Russia. 20-25 August 2018 Abstract Background: Thousands of long non-coding RNA (lncRNA) genes are annotated in the human genome. Recent studies showed the key role of lncRNAs in a variety of fundamental cellular processes. Dysregulation of lncRNAs can drive tumorigenesis and they are now considered to be a promising therapeutic target in cancer. However, how lncRNAs contribute to the development of hereditary diseases in human is still mostly unknown. Results: This review is focused on hereditary diseases in the pathogenesis of which long non-coding RNAs play an important role. Conclusions: Fundamental research in the field of molecular genetics of lncRNA is necessary for a more complete understanding of their significance. Future research will help translate this knowledge into clinical practice which will not only lead to an increase in the diagnostic rate but also in the future can help with the development of etiotropic treatments for hereditary diseases. Keywords: Long non-coding RNA, lncRNA, Hereditary disease, Gene regulation, Medical genetics Introduction The second group includes rRNAs and long non-coding In 1958, Francis Crick proposed the central dogma of mo- RNAs (lncRNAs), which to date are very poorly function- lecular biology in which he explained the flow of genetic ally annotated. -
SNF2 Chromatin Remodeler-Family Proteins FRG1 and -2 Are Required for RNA-Directed DNA Methylation
SNF2 chromatin remodeler-family proteins FRG1 and -2 are required for RNA-directed DNA methylation Martin Grotha, Hume Strouda,1, Suhua Fenga,b,c, Maxim V. C. Greenberga,2, Ajay A. Vashishtd, James A. Wohlschlegeld, Steven E. Jacobsena,b,c,3, and Israel Ausine,3 aDepartment of Molecular, Cell, and Developmental Biology, bEli & Edythe Broad Center of Regenerative Medicine & Stem Cell Research, dDepartment of Biological Chemistry, David Geffen School of Medicine, cHoward Hughes Medical Institute, University of California, Los Angeles, CA 90095; and eBasic Forestry and Biotechnology Center, Fujian Agriculture and Forestry University, Fujian, Fuzhou 350002, China Contributed by Steven E. Jacobsen, October 29, 2014 (sent for review August 2, 2014) DNA methylation in Arabidopsis thaliana is maintained by at least four (6, 7). Recruitment of Pol V is mediated by methyl-CG–binding different enzymes: DNA METHYLTRANSFERASE1 (MET1), CHROMO- noncatalytic Su(var)3-9 histone methyltransferase homologs METHYLASE3 (CMT3), DOMAINS REARRANGED METHYLTRANSFER- SUVH2 and SUVH9, and a putative chromatin remodeling ASE2 (DRM2), and CHROMOMETHYLASE2 (CMT2). However, DNA complex called the DRD1-DMS3-RDM1 complex (8, 9). In ad- methylation is established exclusively by the enzyme DRM2, which dition to SUVH2 and SUVH9, SUVR2 from the same family of acts in the RNA-directed DNA methylation (RdDM) pathway. Some SET-domain proteins was also identified as an RdDM factor by RdDM components belong to gene families and have partially redun- a systematic analysis of DNA methylation defects in mutants of dant functions, such as the endoribonucleases DICER-LIKE 2, 3,and4, Su(var)3-9 homologs (10). However, the precise molecular function and INVOLVED IN DE NOVO2 (IDN2) interactors IDN2-LIKE 1 and 2. -
CIC-DUX4 Induces Small Round Cell Sarcomas Distinct from Ewing Sarcoma
Author Manuscript Published OnlineFirst on April 12, 2017; DOI: 10.1158/0008-5472.CAN-16-3351 Author manuscripts have been peer reviewed and accepted for publication but have not yet been edited. CIC-DUX4 induces small round cell sarcomas distinct from Ewing sarcoma Toyoki Yoshimoto 1, 2, Miwa Tanaka1, Mizuki Homme1, Yukari Yamazaki1, Yutaka Takazawa3, Cristina R Antonescu4, and Takuro Nakamura1 1Division of Carcinogenesis, The Cancer Institute, Japanese Foundation for Cancer Research, Tokyo, Japan. 2Department of Pathology, Toranomon Hospital, Tokyo Japan. 3Division of Pathology, The Cancer Institute, Japanese Foundation for Cancer Research, Tokyo Japan. 4Department of Pathology, Memorial Sloan-Kettering Cancer Center, New York, New York. Running title: Mouse model for CIC-DUX4 sarcoma Keywords: CIC-DUX4, sarcoma model, Ccnd2, Muc5ac, biomarker The abbreviations used are: CDS, CIC-DUX4 sarcoma; ES, Ewing sarcoma; eMC, embryonic mesenchymal cell; SS, synovial sarcoma; RS, rhabdomyosarcoma; EMCS, extraskeletal myxoid chondrosarcoma; GSEA, gene set enrichment analysis; ECM, extracellular matrix; MSC, mesenchymal stem cell. Grant Support: The study was supported by Grants-in-Aid for Scientific Research from Japan Society for the Promotion of Science (no. 26250029 to T. Nakamura), and Cancer Center Support grants (P50 CA140146 and P30-CA008747 to C. R. Antonescu) from the U.S. National Institute of Health. Corresponding Author: Takuro Nakamura, Division of Carcinogenesis, The Cancer Institute, Japanese Foundation for Cancer Research, 3-8-31 Ariake, Koto-ku, Tokyo 135-8550, Japan. Phone: 81-3-3570-0462; E-mail: [email protected] T. Yoshimoto and M. Tanaka contributed equally to this article. The manuscript includes 3,775 words, five figures and two tables. -
The DNA Sequence and Comparative Analysis of Human Chromosome 20
articles The DNA sequence and comparative analysis of human chromosome 20 P. Deloukas, L. H. Matthews, J. Ashurst, J. Burton, J. G. R. Gilbert, M. Jones, G. Stavrides, J. P. Almeida, A. K. Babbage, C. L. Bagguley, J. Bailey, K. F. Barlow, K. N. Bates, L. M. Beard, D. M. Beare, O. P. Beasley, C. P. Bird, S. E. Blakey, A. M. Bridgeman, A. J. Brown, D. Buck, W. Burrill, A. P. Butler, C. Carder, N. P. Carter, J. C. Chapman, M. Clamp, G. Clark, L. N. Clark, S. Y. Clark, C. M. Clee, S. Clegg, V. E. Cobley, R. E. Collier, R. Connor, N. R. Corby, A. Coulson, G. J. Coville, R. Deadman, P. Dhami, M. Dunn, A. G. Ellington, J. A. Frankland, A. Fraser, L. French, P. Garner, D. V. Grafham, C. Grif®ths, M. N. D. Grif®ths, R. Gwilliam, R. E. Hall, S. Hammond, J. L. Harley, P. D. Heath, S. Ho, J. L. Holden, P. J. Howden, E. Huckle, A. R. Hunt, S. E. Hunt, K. Jekosch, C. M. Johnson, D. Johnson, M. P. Kay, A. M. Kimberley, A. King, A. Knights, G. K. Laird, S. Lawlor, M. H. Lehvaslaiho, M. Leversha, C. Lloyd, D. M. Lloyd, J. D. Lovell, V. L. Marsh, S. L. Martin, L. J. McConnachie, K. McLay, A. A. McMurray, S. Milne, D. Mistry, M. J. F. Moore, J. C. Mullikin, T. Nickerson, K. Oliver, A. Parker, R. Patel, T. A. V. Pearce, A. I. Peck, B. J. C. T. Phillimore, S. R. Prathalingam, R. W. Plumb, H. Ramsay, C. M. -
The DUX4 Homeodomains Mediate Inhibition of Myogenesis and Are Functionally Exchangeable with the Pax7 Homeodomain Darko Bosnakovski1,2, Erik A
© 2017. Published by The Company of Biologists Ltd | Journal of Cell Science (2017) 130, 3685-3697 doi:10.1242/jcs.205427 RESEARCH ARTICLE The DUX4 homeodomains mediate inhibition of myogenesis and are functionally exchangeable with the Pax7 homeodomain Darko Bosnakovski1,2, Erik A. Toso2, Lynn M. Hartweck2, Alessandro Magli3, Heather A. Lee2, Eliza R. Thompson2, Abhijit Dandapat2, Rita C. R. Perlingeiro3 and Michael Kyba2,* ABSTRACT downstream target genes, compared with controls (Celegato et al., Facioscapulohumeral muscular dystrophy (FSHD) is caused by 2006; Krom et al., 2012; Rahimov et al., 2012; Tassin et al., 2012; inappropriate expression of the double homeodomain protein DUX4. Tsumagari et al., 2011; Winokur et al., 2003a,b). In our previous work, DUX4 DUX4 has bimodal effects, inhibiting myogenic differentiation and we demonstrated that ,whenexpressedatlowlevelsinC2C12 blocking MyoD at low levels of expression, and killing myoblasts at myoblasts, recapitulates aspects of this FSHD myoblast phenotype, high levels. Pax3 and Pax7, which contain related homeodomains, namely that it sensitizes cells to oxidative stress and severely reduces MyoD antagonize the cell death phenotype of DUX4 in C2C12 cells, mRNA and protein levels (Bosnakovski et al., 2008b). High DUX4 suggesting some type of competitive interaction. Here, we show that levels of expression caused cell death (Bosnakovski et al., the effects of DUX4 on differentiation and MyoD expression require the 2008b). In addition to these effects, myoblasts expressing low levels of DUX4 homeodomains but do not require the C-terminal activation domain of had diminished differentiation potential, presumably caused DUX4. We tested the set of equally related homeodomain proteins by dysregulation of myogenic regulatory factors (MRFs), including (Pax6, Pitx2c, OTX1, Rax, Hesx1, MIXL1 and Tbx1) and found MyoD (Bosnakovski et al., 2008b). -
Fulcrum WMS DUX4 FSHD Poster
Targeting DUX4 Expression, the Root Cause of FSHD: Identification of a Drug Target and Development Candidate Owen B. Wallace, Anthony Accorsi, Richard Barnes, Angela Cacace, Diego Cadavid, Aaron Chang, David Eyerman, Robert Gould, Steven Kazmirski, Joseph Maglio, Michelle Mellion, Peter Rahl, Alan Robertson, Alejandro Rojas, Lucienne Ronco, Ning Shen, Lorin A. Thompson and Erin Valentine Fulcrum Therapeutics. 26 Landsdowne Street, Cambridge, Massachusetts, USA. Abstract 4. Losmapimod reduces DUX4 activation and its downstream consequences • FSHD is caused by the loss of repression at the D4Z4 locus leading to aberrant DUX4 expression A. 150 in skeletal muscle, activation of its early embryo transcriptional program and muscle fiber death. 125 100 • While some progress toward understanding the signals driving DUX4 expression has been made, 75 the factors and pathways involved in the transcriptional activation of this gene remain largely 50 unknown. 25 (% of nuclei in MHC mask) MHC in nuclei of (% % of DMSO% of control 0 • Using optimized myotube culture conditions, we identified p38 MAPK as a key regulator of DUX4 0.001 0.01 0.1 1 expression. [Losmapimod] µM • We observed that treatment with the p38α/β inhibitor losmapimod results in reduction of DUX4 B. C. expression, activity and cell death in FSHD patient-derived myotubes with minimal impact on WT FSHD myogenesis. 125 MBD3L2 mRNA 100 • RNA-seq studies revealed that only a small number of genes were differentially expressed after Active Caspase-3 treatment with losmapimod, ~90% of these are targets of DUX4. 75 50 • Fulcrum Therapeutics has selected losmapimod, a specific p38α/β inhibitor, for clinical 25 development in FSHD. -
Human Proteins That Interact with RNA/DNA Hybrids
Downloaded from genome.cshlp.org on October 4, 2021 - Published by Cold Spring Harbor Laboratory Press Resource Human proteins that interact with RNA/DNA hybrids Isabel X. Wang,1,2 Christopher Grunseich,3 Jennifer Fox,1,2 Joshua Burdick,1,2 Zhengwei Zhu,2,4 Niema Ravazian,1 Markus Hafner,5 and Vivian G. Cheung1,2,4 1Howard Hughes Medical Institute, Chevy Chase, Maryland 20815, USA; 2Life Sciences Institute, University of Michigan, Ann Arbor, Michigan 48109, USA; 3Neurogenetics Branch, National Institute of Neurological Disorders and Stroke, NIH, Bethesda, Maryland 20892, USA; 4Department of Pediatrics, University of Michigan, Ann Arbor, Michigan 48109, USA; 5Laboratory of Muscle Stem Cells and Gene Regulation, National Institute of Arthritis and Musculoskeletal and Skin Diseases, Bethesda, Maryland 20892, USA RNA/DNA hybrids form when RNA hybridizes with its template DNA generating a three-stranded structure known as the R-loop. Knowledge of how they form and resolve, as well as their functional roles, is limited. Here, by pull-down assays followed by mass spectrometry, we identified 803 proteins that bind to RNA/DNA hybrids. Because these proteins were identified using in vitro assays, we confirmed that they bind to R-loops in vivo. They include proteins that are involved in a variety of functions, including most steps of RNA processing. The proteins are enriched for K homology (KH) and helicase domains. Among them, more than 300 proteins preferred binding to hybrids than double-stranded DNA. These proteins serve as starting points for mechanistic studies to elucidate what RNA/DNA hybrids regulate and how they are regulated.