Killi-Data News (Spring) KILLI-DATA INTERNATIONAL Killi-Data News Volume 2, Issue 1, Pages 1–21, March 2017
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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
§4-71-6.5 LIST of CONDITIONALLY APPROVED ANIMALS November
§4-71-6.5 LIST OF CONDITIONALLY APPROVED ANIMALS November 28, 2006 SCIENTIFIC NAME COMMON NAME INVERTEBRATES PHYLUM Annelida CLASS Oligochaeta ORDER Plesiopora FAMILY Tubificidae Tubifex (all species in genus) worm, tubifex PHYLUM Arthropoda CLASS Crustacea ORDER Anostraca FAMILY Artemiidae Artemia (all species in genus) shrimp, brine ORDER Cladocera FAMILY Daphnidae Daphnia (all species in genus) flea, water ORDER Decapoda FAMILY Atelecyclidae Erimacrus isenbeckii crab, horsehair FAMILY Cancridae Cancer antennarius crab, California rock Cancer anthonyi crab, yellowstone Cancer borealis crab, Jonah Cancer magister crab, dungeness Cancer productus crab, rock (red) FAMILY Geryonidae Geryon affinis crab, golden FAMILY Lithodidae Paralithodes camtschatica crab, Alaskan king FAMILY Majidae Chionocetes bairdi crab, snow Chionocetes opilio crab, snow 1 CONDITIONAL ANIMAL LIST §4-71-6.5 SCIENTIFIC NAME COMMON NAME Chionocetes tanneri crab, snow FAMILY Nephropidae Homarus (all species in genus) lobster, true FAMILY Palaemonidae Macrobrachium lar shrimp, freshwater Macrobrachium rosenbergi prawn, giant long-legged FAMILY Palinuridae Jasus (all species in genus) crayfish, saltwater; lobster Panulirus argus lobster, Atlantic spiny Panulirus longipes femoristriga crayfish, saltwater Panulirus pencillatus lobster, spiny FAMILY Portunidae Callinectes sapidus crab, blue Scylla serrata crab, Samoan; serrate, swimming FAMILY Raninidae Ranina ranina crab, spanner; red frog, Hawaiian CLASS Insecta ORDER Coleoptera FAMILY Tenebrionidae Tenebrio molitor mealworm, -
A New Genus of Miniature Cynolebiasine from the Atlantic
64 (1): 23 – 33 © Senckenberg Gesellschaft für Naturforschung, 2014. 16.5.2014 A new genus of miniature cynolebiasine from the Atlantic Forest and alternative biogeographical explanations for seasonal killifish distribution patterns in South America (Cyprinodontiformes: Rivulidae) Wilson J. E. M. Costa Laboratório de Sistemática e Evolução de Peixes Teleósteos, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Caixa Postal 68049, CEP 21944 – 970, Rio de Janeiro, Brasil; wcosta(at)acd.ufrj.br Accepted 21.ii.2014. Published online at www.senckenberg.de/vertebrate-zoology on 30.iv.2014. Abstract The analysis of 78 morphological characters for 16 species representing all the lineages of the tribe Cynopoecilini and three out-groups, indicates that the incertae sedis miniature species ‘Leptolebias’ leitaoi Cruz & Peixoto is the sister group of a clade comprising the genera Leptolebias, Campellolebias, and Cynopoecilus, consequently recognised as the only member of a new genus. Mucurilebias gen. nov. is diagnosed by seven autapomorphies: eye occupying great part of head side, low number of caudal-fin rays (21), distal portion of epural much broader than distal portion of parhypural, an oblique red bar through opercle in both sexes, isthmus bright red in males, a white stripe on the distal margin of the dorsal fin in males, and a red stripe on the distal margin of the anal fin in males.Mucurilebias leitaoi is an endangered seasonal species endemic to the Mucuri river basin. The biogeographical analysis of genera of the subfamily Cynolebiasinae using a dispersal-vicariance, event-based parsimony approach indicates that distribution of South American killifishes may be broadly shaped by dispersal events. -
Water Diversion in Brazil Threatens Biodiversit
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/332470352 Water diversion in Brazil threatens biodiversity Article in AMBIO A Journal of the Human Environment · April 2019 DOI: 10.1007/s13280-019-01189-8 CITATIONS READS 0 992 12 authors, including: Vanessa Daga Valter Monteiro de Azevedo-Santos Universidade Federal do Paraná 34 PUBLICATIONS 374 CITATIONS 17 PUBLICATIONS 248 CITATIONS SEE PROFILE SEE PROFILE Fernando Pelicice Philip Fearnside Universidade Federal de Tocantins Instituto Nacional de Pesquisas da Amazônia 68 PUBLICATIONS 2,890 CITATIONS 612 PUBLICATIONS 20,906 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Freshwater microscrustaceans from continental Ecuador and Galápagos Islands: Integrative taxonomy and ecology View project Conservation policy View project All content following this page was uploaded by Philip Fearnside on 11 May 2019. The user has requested enhancement of the downloaded file. The text that follows is a PREPRINT. O texto que segue é um PREPRINT. Please cite as: Favor citar como: Daga, Vanessa S.; Valter M. Azevedo- Santos, Fernando M. Pelicice, Philip M. Fearnside, Gilmar Perbiche-Neves, Lucas R. P. Paschoal, Daniel C. Cavallari, José Erickson, Ana M. C. Ruocco, Igor Oliveira, André A. Padial & Jean R. S. Vitule. 2019. Water diversion in Brazil threatens biodiversity: Potential problems and alternatives. Ambio https://doi.org/10.1007/s13280-019- 01189-8 . (online version published 27 April 2019) ISSN: 0044-7447 (print version) ISSN: 1654-7209 (electronic version) Copyright: Royal Swedish Academy of Sciences & Springer Science+Business Media B.V. -
The Evolution of the Placenta Drives a Shift in Sexual Selection in Livebearing Fish
LETTER doi:10.1038/nature13451 The evolution of the placenta drives a shift in sexual selection in livebearing fish B. J. A. Pollux1,2, R. W. Meredith1,3, M. S. Springer1, T. Garland1 & D. N. Reznick1 The evolution of the placenta from a non-placental ancestor causes a species produce large, ‘costly’ (that is, fully provisioned) eggs5,6, gaining shift of maternal investment from pre- to post-fertilization, creating most reproductive benefits by carefully selecting suitable mates based a venue for parent–offspring conflicts during pregnancy1–4. Theory on phenotype or behaviour2. These females, however, run the risk of mat- predicts that the rise of these conflicts should drive a shift from a ing with genetically inferior (for example, closely related or dishonestly reliance on pre-copulatory female mate choice to polyandry in conjunc- signalling) males, because genetically incompatible males are generally tion with post-zygotic mechanisms of sexual selection2. This hypoth- not discernable at the phenotypic level10. Placental females may reduce esis has not yet been empirically tested. Here we apply comparative these risks by producing tiny, inexpensive eggs and creating large mixed- methods to test a key prediction of this hypothesis, which is that the paternity litters by mating with multiple males. They may then rely on evolution of placentation is associated with reduced pre-copulatory the expression of the paternal genomes to induce differential patterns of female mate choice. We exploit a unique quality of the livebearing fish post-zygotic maternal investment among the embryos and, in extreme family Poeciliidae: placentas have repeatedly evolved or been lost, cases, divert resources from genetically defective (incompatible) to viable creating diversity among closely related lineages in the presence or embryos1–4,6,11. -
Deterministic Shifts in Molecular Evolution Correlate with Convergence to Annualism in Killifishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.08.09.455723; this version posted August 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Deterministic shifts in molecular evolution correlate with convergence to annualism in killifishes Andrew W. Thompson1,2, Amanda C. Black3, Yu Huang4,5,6 Qiong Shi4,5 Andrew I. Furness7, Ingo, Braasch1,2, Federico G. Hoffmann3, and Guillermo Ortí6 1Department of Integrative Biology, Michigan State University, East Lansing, Michigan 48823, USA. 2Ecology, Evolution & Behavior Program, Michigan State University, East Lansing, MI, USA. 3Department of Biochemistry, Molecular Biology, Entomology, & Plant Pathology, Mississippi State University, Starkville, MS 39759, USA. 4Shenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, BGI Marine, Shenzhen 518083, China. 5BGI Education Center, University of Chinese Academy of Sciences, Shenzhen 518083, China. 6Department of Biological Sciences, The George Washington University, Washington, DC 20052, USA. 7Department of Biological and Marine Sciences, University of Hull, UK. Corresponding author: Andrew W. Thompson, [email protected] bioRxiv preprint doi: https://doi.org/10.1101/2021.08.09.455723; this version posted August 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract: The repeated evolution of novel life histories correlating with ecological variables offer opportunities to test scenarios of convergence and determinism in genetic, developmental, and metabolic features. Here we leverage the diversity of aplocheiloid killifishes, a clade of teleost fishes that contains over 750 species on three continents. -
Fundulus Grandis): Subtitle Charles Alexander Brown Louisiana State University and Agricultural and Mechanical College, [email protected]
Louisiana State University LSU Digital Commons LSU Master's Theses Graduate School 2011 Developmental responses to abiotic conditions during aquatic and air incubatoin of the Gulf killifish (Fundulus grandis): subtitle Charles Alexander Brown Louisiana State University and Agricultural and Mechanical College, [email protected] Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_theses Part of the Environmental Sciences Commons Recommended Citation Brown, Charles Alexander, "Developmental responses to abiotic conditions during aquatic and air incubatoin of the Gulf killifish (Fundulus grandis): subtitle" (2011). LSU Master's Theses. 2848. https://digitalcommons.lsu.edu/gradschool_theses/2848 This Thesis is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Master's Theses by an authorized graduate school editor of LSU Digital Commons. For more information, please contact [email protected]. DEVELOPMENTAL RESPONSES TO ABIOTIC CONDITIONS DURING AQUATIC AND AIR INCUBATION OF THE GULF KILLIFISH (FUNDULUS GRANDIS) A Thesis Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Master of Science in The School of Renewable Natural Resources By Charles A. Brown B.S., Augusta State University, 2008 May 2011 ACKNOWLEDGMENTS I thank Dr. Christopher Green for serving as my major advisor. His dedication to my improvement as a student and professional is greatly appreciated. I thank my committee members, Dr. C. Greg Lutz, Dr. Michael D. Kaller, Dr. D. Allen Rutherford, and Dr. Fernando Galvez for their assistance and patience with my project. -
Amphibious Fishes: Terrestrial Locomotion, Performance, Orientation, and Behaviors from an Applied Perspective by Noah R
AMPHIBIOUS FISHES: TERRESTRIAL LOCOMOTION, PERFORMANCE, ORIENTATION, AND BEHAVIORS FROM AN APPLIED PERSPECTIVE BY NOAH R. BRESSMAN A Dissertation Submitted to the Graduate Faculty of WAKE FOREST UNIVESITY GRADUATE SCHOOL OF ARTS AND SCIENCES in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY Biology May 2020 Winston-Salem, North Carolina Approved By: Miriam A. Ashley-Ross, Ph.D., Advisor Alice C. Gibb, Ph.D., Chair T. Michael Anderson, Ph.D. Bill Conner, Ph.D. Glen Mars, Ph.D. ACKNOWLEDGEMENTS I would like to thank my adviser Dr. Miriam Ashley-Ross for mentoring me and providing all of her support throughout my doctoral program. I would also like to thank the rest of my committee – Drs. T. Michael Anderson, Glen Marrs, Alice Gibb, and Bill Conner – for teaching me new skills and supporting me along the way. My dissertation research would not have been possible without the help of my collaborators, Drs. Jeff Hill, Joe Love, and Ben Perlman. Additionally, I am very appreciative of the many undergraduate and high school students who helped me collect and analyze data – Mark Simms, Tyler King, Caroline Horne, John Crumpler, John S. Gallen, Emily Lovern, Samir Lalani, Rob Sheppard, Cal Morrison, Imoh Udoh, Harrison McCamy, Laura Miron, and Amaya Pitts. I would like to thank my fellow graduate student labmates – Francesca Giammona, Dan O’Donnell, MC Regan, and Christine Vega – for their support and helping me flesh out ideas. I am appreciative of Dr. Ryan Earley, Dr. Bruce Turner, Allison Durland Donahou, Mary Groves, Tim Groves, Maryland Department of Natural Resources, UF Tropical Aquaculture Lab for providing fish, animal care, and lab space throughout my doctoral research. -
Characterization of the G Protein-Coupled Receptor Family
www.nature.com/scientificreports OPEN Characterization of the G protein‑coupled receptor family SREB across fsh evolution Timothy S. Breton1*, William G. B. Sampson1, Benjamin Cliford2, Anyssa M. Phaneuf1, Ilze Smidt3, Tamera True1, Andrew R. Wilcox1, Taylor Lipscomb4,5, Casey Murray4 & Matthew A. DiMaggio4 The SREB (Super‑conserved Receptors Expressed in Brain) family of G protein‑coupled receptors is highly conserved across vertebrates and consists of three members: SREB1 (orphan receptor GPR27), SREB2 (GPR85), and SREB3 (GPR173). Ligands for these receptors are largely unknown or only recently identifed, and functions for all three are still beginning to be understood, including roles in glucose homeostasis, neurogenesis, and hypothalamic control of reproduction. In addition to the brain, all three are expressed in gonads, but relatively few studies have focused on this, especially in non‑mammalian models or in an integrated approach across the entire receptor family. The purpose of this study was to more fully characterize sreb genes in fsh, using comparative genomics and gonadal expression analyses in fve diverse ray‑fnned (Actinopterygii) species across evolution. Several unique characteristics were identifed in fsh, including: (1) a novel, fourth euteleost‑specifc gene (sreb3b or gpr173b) that likely emerged from a copy of sreb3 in a separate event after the teleost whole genome duplication, (2) sreb3a gene loss in Order Cyprinodontiformes, and (3) expression diferences between a gar species and teleosts. Overall, gonadal patterns suggested an important role for all sreb genes in teleost testicular development, while gar were characterized by greater ovarian expression that may refect similar roles to mammals. The novel sreb3b gene was also characterized by several unique features, including divergent but highly conserved amino acid positions, and elevated brain expression in pufer (Dichotomyctere nigroviridis) that more closely matched sreb2, not sreb3a. -
Endangered Species
FEATURE: ENDANGERED SPECIES Conservation Status of Imperiled North American Freshwater and Diadromous Fishes ABSTRACT: This is the third compilation of imperiled (i.e., endangered, threatened, vulnerable) plus extinct freshwater and diadromous fishes of North America prepared by the American Fisheries Society’s Endangered Species Committee. Since the last revision in 1989, imperilment of inland fishes has increased substantially. This list includes 700 extant taxa representing 133 genera and 36 families, a 92% increase over the 364 listed in 1989. The increase reflects the addition of distinct populations, previously non-imperiled fishes, and recently described or discovered taxa. Approximately 39% of described fish species of the continent are imperiled. There are 230 vulnerable, 190 threatened, and 280 endangered extant taxa, and 61 taxa presumed extinct or extirpated from nature. Of those that were imperiled in 1989, most (89%) are the same or worse in conservation status; only 6% have improved in status, and 5% were delisted for various reasons. Habitat degradation and nonindigenous species are the main threats to at-risk fishes, many of which are restricted to small ranges. Documenting the diversity and status of rare fishes is a critical step in identifying and implementing appropriate actions necessary for their protection and management. Howard L. Jelks, Frank McCormick, Stephen J. Walsh, Joseph S. Nelson, Noel M. Burkhead, Steven P. Platania, Salvador Contreras-Balderas, Brady A. Porter, Edmundo Díaz-Pardo, Claude B. Renaud, Dean A. Hendrickson, Juan Jacobo Schmitter-Soto, John Lyons, Eric B. Taylor, and Nicholas E. Mandrak, Melvin L. Warren, Jr. Jelks, Walsh, and Burkhead are research McCormick is a biologist with the biologists with the U.S. -
Monophyly and Taxonomy of the Neotropical Seasonal Killifish Genus Leptolebias (Teleostei: Aplocheiloidei: Rivulidae), with the Description of a New Genus
Zoological Journal of the Linnean Society, 2008, 153, 147–160. With 11 figures Monophyly and taxonomy of the Neotropical seasonal killifish genus Leptolebias (Teleostei: Aplocheiloidei: Rivulidae), with the description of a new genus WILSON J. E. M. COSTA* Downloaded from https://academic.oup.com/zoolinnean/article/153/1/147/2606377 by guest on 23 November 2020 Laboratório de Ictiologia Geral e Aplicada, Departamento de Zoologia, Universidade Federal do Rio de Janeiro, Caixa Postal 68049, CEP 21944-970, Rio de Janeiro, Brazil Received 30 March 2007; accepted for publication 4 July 2007 A phylogenetic analysis based on morphological characters indicates that Leptolebias Myers, 1952, a genus of small killifishes highly threatened with extinction, from Brazil, is paraphyletic. As a consequence, Leptolebias is restricted in this study to a well-supported clade that includes Leptolebias marmoratus (Ladiges, 1934), Leptolebias splendens (Myers, 1942), Leptolebias opalescens (Myers, 1942), and Leptolebias citrinipinnis (Costa, Lacerda & Tanizaki, 1988), from the coastal plains of Rio de Janeiro, and Leptolebias aureoguttatus (Cruz, 1974) (herein redescribed, and for which a lectotype is designated) and Leptolebias itanhaensis sp. nov., from the coastal plains of São Paulo and Paraná, in southern Brazil. Leptolebias is diagnosed by three synapomorphies: a caudal fin that is longer than deep, a single anterior supraorbital neuromast, and dark pigmentation that does not extend to the distal portion of the dorsal fin in males. A key is provided for the identification of species of Leptolebias. Three species formerly placed in Leptolebias, Leptolebias minimus (Myers, 1942), Leptolebias fractifasciatus (Costa, 1988), and Leptolebias cruzi (Costa, 1988), are transferred to Notholebias gen. -
The Neotropical Genus Austrolebias: an Emerging Model of Annual Killifishes Nibia Berois1, Maria J
lopmen ve ta e l B D io & l l o l g e y C Cell & Developmental Biology Berois, et al., Cell Dev Biol 2014, 3:2 ISSN: 2168-9296 DOI: 10.4172/2168-9296.1000136 Review Article Open Access The Neotropical Genus Austrolebias: An Emerging Model of Annual Killifishes Nibia Berois1, Maria J. Arezo1 and Rafael O. de Sá2* 1Departamento de Biologia Celular y Molecular, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay 2Department of Biology, University of Richmond, Richmond, Virginia, USA *Corresponding author: Rafael O. de Sá, Department of Biology, University of Richmond, Richmond, Virginia, USA, Tel: 804-2898542; Fax: 804-289-8233; E-mail: [email protected] Rec date: Apr 17, 2014; Acc date: May 24, 2014; Pub date: May 27, 2014 Copyright: © 2014 Rafael O. de Sá, et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Abstract Annual fishes are found in both Africa and South America occupying ephemeral ponds that dried seasonally. Neotropical annual fishes are members of the family Rivulidae that consist of both annual and non-annual fishes. Annual species are characterized by a prolonged embryonic development and a relatively short adult life. Males and females show striking sexual dimorphisms, complex courtship, and mating behaviors. The prolonged embryonic stage has several traits including embryos that are resistant to desiccation and undergo up to three reversible developmental arrests until hatching. These unique developmental adaptations are closely related to the annual fish life cycle and are the key to the survival of the species.