Viral Envelope Are Controlled by the Helper Virus Used to Activate The
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Chapitre Quatre La Spécificité D'hôtes Des Virophages Sputnik
AIX-MARSEILLE UNIVERSITE FACULTE DE MEDECINE DE MARSEILLE ECOLE DOCTORALE DES SCIENCES DE LA VIE ET DE LA SANTE THESE DE DOCTORAT Présentée par Morgan GAÏA Né le 24 Octobre 1987 à Aubagne, France Pour obtenir le grade de DOCTEUR de l’UNIVERSITE AIX -MARSEILLE SPECIALITE : Pathologie Humaine, Maladies Infectieuses Les virophages de Mimiviridae The Mimiviridae virophages Présentée et publiquement soutenue devant la FACULTE DE MEDECINE de MARSEILLE le 10 décembre 2013 Membres du jury de la thèse : Pr. Bernard La Scola Directeur de thèse Pr. Jean -Marc Rolain Président du jury Pr. Bruno Pozzetto Rapporteur Dr. Hervé Lecoq Rapporteur Faculté de Médecine, 13385 Marseille Cedex 05, France URMITE, UM63, CNRS 7278, IRD 198, Inserm 1095 Directeur : Pr. Didier RAOULT Avant-propos Le format de présentation de cette thèse correspond à une recommandation de la spécialité Maladies Infectieuses et Microbiologie, à l’intérieur du Master des Sciences de la Vie et de la Santé qui dépend de l’Ecole Doctorale des Sciences de la Vie de Marseille. Le candidat est amené à respecter des règles qui lui sont imposées et qui comportent un format de thèse utilisé dans le Nord de l’Europe permettant un meilleur rangement que les thèses traditionnelles. Par ailleurs, la partie introduction et bibliographie est remplacée par une revue envoyée dans un journal afin de permettre une évaluation extérieure de la qualité de la revue et de permettre à l’étudiant de commencer le plus tôt possible une bibliographie exhaustive sur le domaine de cette thèse. Par ailleurs, la thèse est présentée sur article publié, accepté ou soumis associé d’un bref commentaire donnant le sens général du travail. -
Replication-Defective Chimeric Helper Proviruses and Factors Affecting Generation of Competent Virus
MOLECULAR AND CELLULAR BIOLOGY, May 1987, p. 1797-1806 Vol. 7, No. 5 0270-7306/87/051797-10$02.00/0 Copyright © 1987, American Society for Microbiology Replication-Defective Chimeric Helper Proviruses and Factors Affecting Generation of Competent Virus: Expression of Moloney Murine Leukemia Virus Structural Genes via the Metallothionein Promoter ROBERT A. BOSSELMAN,* ROU-YIN HSU, JOAN BRUSZEWSKI, SYLVIA HU, FRANK MARTIN, AND MARGERY NICOLSON Amgen, Thousand Oaks, California 91320 Received 15 October 1986/Accepted 28 January 1987 Two chimeric helper proviruses were derived from the provirus of the ecotropic Moloney murine leukemia virus by replacing the 5' long terminal repeat and adjacent proviral sequences with the mouse metallothionein I promoter. One of these chimeric proviruses was designed to express the gag-pol genes of the virus, whereas the other was designed to express only the env gene. When transfected into NIH 3T3 cells, these helper proviruses failed to generate competent virus but did express Zn2 -inducible trans-acting viral functions needed to assemble infectious vectors. One helper cell line (clone 32) supported vector assembly at levels comparable to those supported by the Psi-2 and PA317 cell lines transfected with the same vector. Defective proviruses which carry the neomycin phosphotransferase gene and which lack overlapping sequence homology with the 5' end of the chimeric helper proviruses could be transfected into the helper cell line without generation of replication-competent virus. Mass cultures of transfected helper cells produced titers of about 104 G418r CFU/ml, whereas individual clones produced titers between 0 and 2.6 x 104 CFU/ml. -
Virus Entry: What Has Ph Got to Do with It?
TURNING POINTS Virus entry: What has pH got to do with it? Ari Helenius After several years of working on membrane For almost two years, the virus entry path- Over the following months, we validated proteins using the Semliki Forest virus (SFV) as way and mechanism of host penetration con- all the predictions of our pH hypothesis. For a model, I decided in 1976 to focus my research tinued to elude us. However, in the spring example, we could demonstrate a membrane on the mechanisms by which animal viruses of 1978, I had the chance to participate in a fusion reaction in vitro by simply mixing such as SFV enter and infect their host cells. Dahlem Conference in Berlin called ‘Transport liposomes and SFV, and briefly dropping the pH I had just moved from Finland with the lab of of Macromolecules in Cellular Systems’. It was to 6 or below. Moreover, when we added acidic Kai Simons to the newly founded European an opportune time for a meeting on this topic: medium to cells, we could ‘fool’ surface-bound Molecular Biology Laboratory (EMBL) in pathways of vesicle transport were being dis- viruses into fusing with the plasma membrane; Heidelberg, Germany. I was eager to tackle a covered, receptor-mediated trafficking pro- the entry block caused by weak bases was challenging problem — and one that did not cesses were beginning to be described, and the bypassed and the cells became infected. require work with detergents. important role of clathrin-coated vesicles was Joined by Judy White, Mark Marsh and Relying almost exclusively on electron finally properly appreciated. -
Formation of Influenza Virus Particles Lacking Hemagglutinin on the Viral Envelope Asit K
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Papers in Veterinary and Biomedical Science Veterinary and Biomedical Sciences, Department of 1986 Formation of Influenza Virus Particles Lacking Hemagglutinin on the Viral Envelope Asit K. Pattnaik University of Nebraska-Lincoln, [email protected] Donald J. Brown University of California at Los Angeles Debi P. Nayak University of California at Los Angeles Follow this and additional works at: http://digitalcommons.unl.edu/vetscipapers Part of the Biochemistry, Biophysics, and Structural Biology Commons, Cell and Developmental Biology Commons, Immunology and Infectious Disease Commons, Medical Sciences Commons, Veterinary Microbiology and Immunobiology Commons, and the Veterinary Pathology and Pathobiology Commons Pattnaik, Asit K.; Brown, Donald J.; and Nayak, Debi P., "Formation of Influenza Virus Particles Lacking Hemagglutinin on the Viral Envelope" (1986). Papers in Veterinary and Biomedical Science. 198. http://digitalcommons.unl.edu/vetscipapers/198 This Article is brought to you for free and open access by the Veterinary and Biomedical Sciences, Department of at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Papers in Veterinary and Biomedical Science by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. JOURNAL OF VIROLOGY, Dec. 1986, p. 994-1001 Vol. 60, No.3 0022-S38X1861120994-08 $02.00/0 Copyright © 1986, American Society for Microbiology Formation of Influenza Virus Particles -
How Influenza Virus Uses Host Cell Pathways During Uncoating
cells Review How Influenza Virus Uses Host Cell Pathways during Uncoating Etori Aguiar Moreira 1 , Yohei Yamauchi 2 and Patrick Matthias 1,3,* 1 Friedrich Miescher Institute for Biomedical Research, 4058 Basel, Switzerland; [email protected] 2 Faculty of Life Sciences, School of Cellular and Molecular Medicine, University of Bristol, Bristol BS8 1TD, UK; [email protected] 3 Faculty of Sciences, University of Basel, 4031 Basel, Switzerland * Correspondence: [email protected] Abstract: Influenza is a zoonotic respiratory disease of major public health interest due to its pan- demic potential, and a threat to animals and the human population. The influenza A virus genome consists of eight single-stranded RNA segments sequestered within a protein capsid and a lipid bilayer envelope. During host cell entry, cellular cues contribute to viral conformational changes that promote critical events such as fusion with late endosomes, capsid uncoating and viral genome release into the cytosol. In this focused review, we concisely describe the virus infection cycle and highlight the recent findings of host cell pathways and cytosolic proteins that assist influenza uncoating during host cell entry. Keywords: influenza; capsid uncoating; HDAC6; ubiquitin; EPS8; TNPO1; pandemic; M1; virus– host interaction Citation: Moreira, E.A.; Yamauchi, Y.; Matthias, P. How Influenza Virus Uses Host Cell Pathways during 1. Introduction Uncoating. Cells 2021, 10, 1722. Viruses are microscopic parasites that, unable to self-replicate, subvert a host cell https://doi.org/10.3390/ for their replication and propagation. Despite their apparent simplicity, they can cause cells10071722 severe diseases and even pose pandemic threats [1–3]. -
Satellite RNA-Mediated Resistance to Turnip Crinkle Virus in Arabidopsis Lnvolves a Reduction in Virus Movement
The Plant Cell, Vol. 9, 2051-2063, November 1997 O 1997 American Society of Plant Physiologists Satellite RNA-Mediated Resistance to Turnip Crinkle Virus in Arabidopsis lnvolves a Reduction in Virus Movement Qingzhong Kong, Jianlong Wang, and Anne E. Simon’ Department of Biochemistry and Molecular Biology and Program in Molecular and Cellular Biology, University of Massachusetts, Amherst, Massachusetts O1 003-4505 Satellite RNAs (sat-RNAs) are parasites of viruses that can mediate resistance to the helper virus. We previously showed that a sat-RNA (sat-RNA C) of turnip crinkle virus (TCV), which normally intensifies symptoms of TCV, is able to attenuate symptoms when TCV contains the coat protein (CP) of cardamine chlorotic fleck virus (TCV-CPccw).We have now determined that sat-RNA C also attenuates symptoms of TCV containing an alteration in the initiating AUG of the CP open reading frame (TCV-CPm). TCV-CPm, which is able to move systemically in both the TCV-susceptible ecotype Columbia (Col-O) and the TCV-resistant ecotype Dijon (Di-O), produced a reduced level of CP and no detectable virions in infected plants. Sat-RNA C reduced the accumulation of TCV-CPm by <25% in protoplasts while reducing the level of TCV-CPm by 90 to 100% in uninoculated leaves of COLO and Di-O. Our results suggest that in the presence of a re- duced level of a possibly altered CP, sat-RNA C reduces virus long-distance movement in a manner that is independent of the salicylic acid-dependent defense pathway. INTRODUCTION Plants exhibit different types of resistance to plant viruses, on virus association for replication and spread in plants. -
Helper-Dependent Adenoviral Vectors
ndrom Sy es tic & e G n e e n G e f T o Rosewell, J Genet Syndr Gene Ther 2011, S:5 Journal of Genetic Syndromes h l e a r n a r p DOI: 10.4172/2157-7412.S5-001 u y o J & Gene Therapy ISSN: 2157-7412 Review Article Open Access Helper-Dependent Adenoviral Vectors Amanda Rosewell, Francesco Vetrini, and Philip Ng* Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, 77030 USA Abstract Helper-dependent adenoviral vectors are devoid of all viral coding sequences, possess a large cloning capacity, and can efficiently transduce a wide variety of cell types from various species independent of the cell cycle to mediate long-term transgene expression without chronic toxicity. These non-integrating vectors hold tremendous potential for a variety of gene transfer and gene therapy applications. Here, we review the production technologies, applications, obstacles to clinical translation and their potential resolutions, and the future challenges and unanswered questions regarding this promising gene transfer technology. Introduction DNA polymerase and terminal protein precursor (pTP). The E3 region, which is dispensable for virus growth in cell culture, encodes at least Helper-dependent adenoviral vectors (HDAd) are deleted of all seven proteins most of which are involved in host immune evasion. The viral coding sequences, can efficiently transduce a wide variety of cell E4 region encodes at least six proteins, some functioning to facilitate types from various species independent of the cell cycle, and can result in DNA replication, enhance late gene expression and decrease host long-term transgene expression. -
Helper Virus-Free, Optically Controllable, and Two-Plasmid-Based Production of Adeno-Associated Virus Vectors of Serotypes 1 to 6 Dirk Grimm,1 Mark A
doi:10.1016/S1525-0016(03)00095-9 METHOD Helper Virus-Free, Optically Controllable, and Two-Plasmid-Based Production of Adeno-associated Virus Vectors of Serotypes 1 to 6 Dirk Grimm,1 Mark A. Kay,1,* and Juergen A. Kleinschmidt2 1 Department of Pediatrics and Department of Genetics, Stanford University School of Medicine, 300 Pasteur Drive, Stanford, California 94305 2 Department of Applied Tumor Virology, German Cancer Research Center, Im Neuenheimer Feld 242, D-69121 Heidelberg, Germany *To whom correspondence and reprint requests should be addressed. Fax: (650) 498-6540. E-mail: [email protected]. We present a simple and safe strategy for producing high-titer adeno-associated virus (AAV) vectors derived from six different AAV serotypes (AAV-1 to AAV-6). The method, referred to as “HOT,” is helper virus free, optically controllable, and based on transfection of only two plasmids, i.e., an AAV vector construct and one of six novel AAV helper plasmids. The latter were engineered to carry AAV serotype rep and cap genes together with adenoviral helper functions, as well as unique fluorescent protein expression cassettes, allowing confirmation of successful transfection and identification of the transfected plasmid. Cross-packaging of vector DNA derived from AAV-2, -3, or -6 was up to 10-fold more efficient using our novel plasmids, compared to a conservative adenovirus-dependent method. We also identified a variety of useful antibodies, allowing detec- tion of Rep or VP proteins, or assembled capsids, of all six AAV serotypes. Finally, we describe unique cell tropisms and kinetics of transgene expression for AAV serotype vectors in primary or transformed cells from four different species. -
Structure and Dynamics of the SARS-Cov-2 Envelope Protein Monomer
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.10.434722; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Structure and dynamics of the SARS-CoV-2 envelope protein monomer Alexander Kuzmin1, Philipp Orekhov1,2, Roman Astashkin1,3, Valentin Gordeliy1,3,4,5, Ivan Gushchin1,* 1 Research Center for Molecular Mechanisms of Aging and Age-related Diseases, Moscow Institute of Physics and Technology, Dolgoprudny, Russia 2 Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow, Russia 3 Institut de Biologie Structurale (IBS), Université Grenoble Alpes, CEA, CNRS, Grenoble, France 4 Institute of Biological Information Processing (IBI-7: Structural Biochemistry), Forschungszentrum Jülich GmbH, Jülich, Germany 5 JuStruct: Jülich Center for Structural Biology, Forschungszentrum Jülich GmbH, Jülich, Germany. E-mail for correspondence: [email protected] bioRxiv preprint doi: https://doi.org/10.1101/2021.03.10.434722; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract Coronaviruses, especially SARS-CoV-2, present an ongoing threat for human wellbeing. Consequently, elucidation of molecular determinants of their function and interaction with host is an important task. Whereas some of the coronaviral proteins are extensively characterized, others remain understudied. -
A Loop Region in the N-Terminal Domain of Ebola Virus VP40 Is Important in Viral Assembly, Budding, and Egress
Viruses 2014, 6, 3837-3854; doi:10.3390/v6103837 OPEN ACCESS viruses ISSN 1999-4915 www.mdpi.com/journal/viruses Article A Loop Region in the N-Terminal Domain of Ebola Virus VP40 Is Important in Viral Assembly, Budding, and Egress Emmanuel Adu-Gyamfi 1,†,‡, Smita P. Soni 2,‡, Clara S. Jee 1, Michelle A. Digman 3,4, Enrico Gratton 3 and Robert V. Stahelin 1,2,* 1 Department of Chemistry and Biochemistry, the Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN 46556, USA; E-Mails: [email protected] (E.A.-G.); [email protected] (C.S.J.) 2 Department of Biochemistry and Molecular Biology, Indiana University School of Medicine-South Bend, South Bend, IN 46617, USA; E-Mail: [email protected] 3 Department of Biomedical Engineering, University of California, Irvine, CA 92697, USA; E-Mails: [email protected] (M.A.D.); [email protected] (E.G.) 4 Centre for Bioactive Discovery in Health and Ageing, School of Science and Technology, University of New England, Armidale NSW 2351, Australia † Current address: Department of Molecular Biosciences/HHMI, Northwestern University, Evanston, IL 60208, USA. ‡ These authors contributed equally to this work. * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +1-574-631-5054; Fax: +1-574-631-7821. External Editor: Jens H. Kuhn Received: 1 July 2014; in revised form: 9 October 2014 / Accepted: 11 October 2014 / Published: 17 October 2014 Abstract: Ebola virus (EBOV) causes viral hemorrhagic fever in humans and can have clinical fatality rates of ~60%. The EBOV genome consists of negative sense RNA that encodes seven proteins including viral protein 40 (VP40). -
Aavpro® Helper Free System
Cat. # 6230, 6652, 6655 For Research Use AAVpro® Helper Free System Product Manual v201503Da Cat. #6230, 6652, 6655 AAVpro® Helper Free System v201503Da Table of Contents I. Description ........................................................................................................... 4 II. Components ........................................................................................................ 6 III. Storage................................................................................................................... 9 IV. Materials Required but not Provided ........................................................ 9 V. Overview of AAV Particle Preparation .....................................................10 VI. Protocol ...............................................................................................................10 VII. Measurement of Virus Titer .........................................................................12 VIII. Reference Data .................................................................................................13 IX. References ..........................................................................................................17 X. Related Products ..............................................................................................17 2 URL:http://www.takara-bio.com Cat. #6230, 6652, 6655 AAVpro® Helper Free System v201503Da Safety & Handling of Adeno-Associated Virus Vectors The protocols in this User Manual require the handling of adeno-associated virus -
Virophages Question the Existence of Satellites
CORRESPONDENCE LINK TO ORIGINAL ARTICLE LINK TO AUTHOR’S REPLY located in front of 12 out of 21 Sputnik coding sequences and all 20 Cafeteria roenbergensis Virophages question the virus coding sequences (both promoters being associated with the late expression of genes) existence of satellites imply that virophage gene expression is gov- erned by the transcription machinery of the Christelle Desnues and Didier Raoult host virus during the late stages of infection. Another point concerns the effect of the virophage on the host virus. It has been argued In a recent Comment (Virophages or satel- genome sequences of other known viruses that the effect of Sputnik or Mavirus on the lite viruses? Nature Rev. Microbiol. 9, 762– indicates that the virophages probably belong host is similar to that observed for STNV and 763 (2011))1, Mart Krupovic and Virginija to a new viral family. This is further supported its helper virus1. However, in some cases the Cvirkaite-Krupovic argued that the recently by structural analysis of Sputnik, which infectivity of TNV is greater when inoculated described virophages, Sputnik and Mavirus, showed that MCP probably adopts a double- along with STNV (or its nucleic acid) than should be classified as satellite viruses. In a jelly-roll fold, although there is no sequence when inoculated alone, suggesting that STNV response2, to which Krupovic and Cvirkaite- similarity between the virophage MCPs and makes cells more susceptible to TNV11. Such Krupovic replied3, Matthias Fisher presented those of other members of the bacteriophage an effect has never been observed for Sputnik two points supporting the concept of the PRD1–adenovirus lineage9.