RESEARCH ARTICLE The application of rumen simulation technique (RUSITEC) for studying dynamics of the bacterial community and metabolome in rumen fluid and the effects of a challenge with Clostridium perfringens Stefanie U. Wetzels1☯, Melanie Eger2☯, Marion Burmester2, Lothar Kreienbrock3, Amir Abdulmawjood4, Beate Pinior5, Martin Wagner1, Gerhard Breves2*, Evelyne Mann1* a1111111111 a1111111111 1 Institute for Milk Hygiene, Milk Technology and Food Science, Department for Farm Animals and Veterinary Public Health, University of Veterinary Medicine Vienna, Vienna, Austria, 2 Institute for Physiology, University a1111111111 of Veterinary Medicine Hannover, Hannover, Germany, 3 Institute for Biometry, Epidemiology and a1111111111 Information Processing, University of Veterinary Medicine Hannover, Hannover, Germany, 4 Institute for a1111111111 Food Quality and Food Safety, Research Center for Emerging Infections and Zoonoses (RIZ), University of Veterinary Medicine Hannover, Hannover, Germany, 5 Institute for Veterinary Public Health, Department for Farm Animals and Veterinary Public Health, University of Veterinary Medicine Vienna, Vienna, Austria ☯ These authors contributed equally to this work. *
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[email protected] (EM) OPEN ACCESS Citation: Wetzels SU, Eger M, Burmester M, Kreienbrock L, Abdulmawjood A, Pinior B, et al. (2018) The application of rumen simulation Abstract technique (RUSITEC) for studying dynamics of the The rumen simulation technique (RUSITEC) is a well-established semicontinuous in vitro bacterial community and metabolome in rumen fluid and the effects of a challenge with Clostridium model for investigating ruminal fermentation; however, information on the stability of the perfringens. PLoS ONE 13(2): e0192256. https:// ruminal bacterial microbiota and metabolome in the RUSITEC system is rarely available. doi.org/10.1371/journal.pone.0192256 The availability of high resolution methods, such as high-throughput sequencing and meta- Editor: Michel R.