Cell-Specific Variation in E-Selectin
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A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
Targeting Innate Immunity to Treat Cancer
cancers Editorial Targeting Innate Immunity to Treat Cancer Matthew Austin and Harriet Kluger * Yale Cancer Center, Yale School of Medicine, 333 Cedar St, WWW211B, New Haven, CT 06520, USA; [email protected] * Correspondence: [email protected] Received: 14 September 2020; Accepted: 16 September 2020; Published: 23 September 2020 In recent years, it has become clear that the immune system plays a critical role in rejecting malignant cells. Through the complex interplay between multiple cell types from both the adaptive and innate immune systems, immune cells are able to identify and destroy tumor cells. Multiple mechanisms of escape from immune surveillance have been characterized and are being harnessed for therapeutic benefit. Proposed mechanisms include, but are not limited to, alteration of surface antigens [1,2], down-regulation of necessary components for antigen presentation [3], secretion of anti-inflammatory cytokines by tumor cells or cells in the tumor micro-environment [4], and upregulation of expression of immune inhibitory molecules [5]. Drugs that target these immune-evasion mechanisms and successfully re-invigorate the immune response include inhibitors of PD-1, its ligand PDL-1, and CTLA-4, all of which have dramatically revolutionized cancer care [6–8]. Other classes of immune therapies that have been approved by the food and drug administration include CAR-T and natural killer (NK) cellular therapies [9], cytokine therapies [10], oncolytic viruses [11] and dendritic cell therapies, such as sipuleucel-T [12]. Immune checkpoint inhibitors, which are thought to primarily work by activation of cytotoxic T cells [13], are the most widely used; however, they are only active in a subset of cancer patients. -
Immune Cell Migration in Inflammation: Present and Future Therapeutic Targets
REVIEW DAMPENING INFLAMMATION Immune cell migration in inflammation: present and future therapeutic targets Andrew D Luster1, Ronen Alon2 & Ulrich H von Andrian3 The burgeoning field of leukocyte trafficking has created new and exciting opportunities in the clinic. Trafficking signals are being defined that finely control the movement of distinct subsets of immune cells into and out of specific tissues. Because the accumulation of leukocytes in tissues contributes to a wide variety of diseases, these ‘molecular codes’ have provided new targets for inhibiting tissue-specific inflammation, which have been confirmed in the clinic. However, immune cell migration is also critically important for the delivery of protective immune responses to tissues. http://www.nature.com/natureimmunology Thus, the challenge for the future will be to identify the trafficking molecules that will most specifically inhibit the key subsets of cells that drive disease processes without affecting the migration and function of leukocytes required for protective immunity. The past three decades have witnessed an explosion of knowledge in they deploy to migrate to target tissues? How do trafficking molecules immunology, which is being increasingly ‘translated’ into new thera- regulate effector cell recruitment in vessels and during subsequent trans- pies for seemingly unrelated human pathologies caused by excessive or endothelial and interstitial migration? Which trafficking molecules are misdirected inflammatory responses. Although such diseases can affect promising targets for safe and effective drug inhibition? Which migra- any part of the body, almost all inflammatory conditions are restricted tion-directed drugs might be effective in which disease(s) and why? to particular target organs or tissue components1–3. -
Down Regulation of Membrane-Bound Neu3 Constitutes a New
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Publications of the IAS Fellows IJC International Journal of Cancer Down regulation of membrane-bound Neu3 constitutes a new potential marker for childhood acute lymphoblastic leukemia and induces apoptosis suppression of neoplastic cells Chandan Mandal1, Cristina Tringali2, Susmita Mondal1, Luigi Anastasia2, Sarmila Chandra3, Bruno Venerando2 and Chitra Mandal1 1 Infectious Diseases and Immunology Division, Indian Institute of Chemical Biology, A Unit of Council of Scientific and Industrial Research, Govt of India, 4, Raja S. C. Mullick Road, Kolkata 700032, India 2 Department of Medical Chemistry, Biochemistry and Biotechnology, University of Milan, and IRCCS Policlinico San Donato, San Donato, Milan, Italy 3 Department of Hematology, Kothari Medical Centre, Kolkata 700027, India Membrane-linked sialidase Neu3 is a key enzyme for the extralysosomal catabolism of gangliosides. In this respect, it regulates pivotal cell surface events, including trans-membrane signaling, and plays an essential role in carcinogenesis. In this report, we demonstrated that acute lymphoblastic leukemia (ALL), lymphoblasts (primary cells from patients and cell lines) are characterized by a marked down-regulation of Neu3 in terms of both gene expression (230 to 40%) and enzymatic activity toward ganglioside GD1a (225.6 to 30.6%), when compared with cells from healthy controls. Induced overexpression of Neu3 in the ALL-cell line, MOLT-4, led to a significant increase of ceramide (166%) and to a parallel decrease of lactosylceramide (255%). These events strongly guided lymphoblasts to apoptosis, as we assessed by the decrease in Bcl2/ Bax ratio, the accumulation of Neu3 transfected cells in the sub G0–G1 phase of the cell cycle, the enhanced annexin-V positivity, the higher cleavage of procaspase-3. -
GM2 Gangliosidoses: Clinical Features, Pathophysiological Aspects, and Current Therapies
International Journal of Molecular Sciences Review GM2 Gangliosidoses: Clinical Features, Pathophysiological Aspects, and Current Therapies Andrés Felipe Leal 1 , Eliana Benincore-Flórez 1, Daniela Solano-Galarza 1, Rafael Guillermo Garzón Jaramillo 1 , Olga Yaneth Echeverri-Peña 1, Diego A. Suarez 1,2, Carlos Javier Alméciga-Díaz 1,* and Angela Johana Espejo-Mojica 1,* 1 Institute for the Study of Inborn Errors of Metabolism, Faculty of Science, Pontificia Universidad Javeriana, Bogotá 110231, Colombia; [email protected] (A.F.L.); [email protected] (E.B.-F.); [email protected] (D.S.-G.); [email protected] (R.G.G.J.); [email protected] (O.Y.E.-P.); [email protected] (D.A.S.) 2 Faculty of Medicine, Universidad Nacional de Colombia, Bogotá 110231, Colombia * Correspondence: [email protected] (C.J.A.-D.); [email protected] (A.J.E.-M.); Tel.: +57-1-3208320 (ext. 4140) (C.J.A.-D.); +57-1-3208320 (ext. 4099) (A.J.E.-M.) Received: 6 July 2020; Accepted: 7 August 2020; Published: 27 August 2020 Abstract: GM2 gangliosidoses are a group of pathologies characterized by GM2 ganglioside accumulation into the lysosome due to mutations on the genes encoding for the β-hexosaminidases subunits or the GM2 activator protein. Three GM2 gangliosidoses have been described: Tay–Sachs disease, Sandhoff disease, and the AB variant. Central nervous system dysfunction is the main characteristic of GM2 gangliosidoses patients that include neurodevelopment alterations, neuroinflammation, and neuronal apoptosis. Currently, there is not approved therapy for GM2 gangliosidoses, but different therapeutic strategies have been studied including hematopoietic stem cell transplantation, enzyme replacement therapy, substrate reduction therapy, pharmacological chaperones, and gene therapy. -
Inflammation and Introduction to Wound Healing
Inflammation and Introduction to Wound Healing Alan D. Proia, M.D., Ph.D. February 14, 2011 Proia©/DUMC 1 Objectives Understand basic concepts of acute, chronic, and granulomatous inflammation Recognize key leukocytes participating in inflammatory responses Distinguish acute, chronic, and granulomatous inflammation Proia©/DUMC 2 What is Inflammation? Response to injury (including infection) Reaction of blood vessels leads to: » Accumulation of fluid and leukocytes in extravascular tissues Destroys, dilutes, or walls off the injurious agent Initiates the repair process Proia©/DUMC 4 What is Inflammation? Fundamentally a protective response May be potentially harmful » Hypersensitivity reactions to insect bites, drugs, contrast media in radiology » Chronic diseases: arthritis, atherosclerosis » Disfiguring scars, visceral adhesions Proia©/DUMC 5 What is Inflammation? Components of inflammatory response » Vascular reaction » Cellular reaction How: Chemical mediators » Derived from plasma proteins » Derived from cells inside and outside of blood vessels Proia©/DUMC 6 Historical Highlights Celsus, a first century A.D. Roman, listed four cardinal signs of acute inflammation: » Rubor (erythema [redness]): vasodilatation, increased blood flow » Tumor (swelling): extravascular accumulation of fluid » Calor (heat): vasodilatation, increased blood flow » Dolor (pain) Proia©/DUMC 7 Types of Inflammation Acute inflammation Chronic inflammation » Short duration » Longer duration » Edema » Lymphocytes & » Mainly neutrophils macrophages -
Salmonella Degrades the Host Glycocalyx Leading to Altered Infection and Glycan Remodeling
UC Davis UC Davis Previously Published Works Title Salmonella Degrades the Host Glycocalyx Leading to Altered Infection and Glycan Remodeling. Permalink https://escholarship.org/uc/item/0nk8n7xb Journal Scientific reports, 6(1) ISSN 2045-2322 Authors Arabyan, Narine Park, Dayoung Foutouhi, Soraya et al. Publication Date 2016-07-08 DOI 10.1038/srep29525 Peer reviewed eScholarship.org Powered by the California Digital Library University of California www.nature.com/scientificreports OPEN Salmonella Degrades the Host Glycocalyx Leading to Altered Infection and Glycan Remodeling Received: 09 February 2016 Narine Arabyan1, Dayoung Park2, Soraya Foutouhi1, Allison M. Weis1, Bihua C. Huang1, Accepted: 17 June 2016 Cynthia C. Williams2, Prerak Desai1,†, Jigna Shah1,‡, Richard Jeannotte1,3,§, Nguyet Kong1, Published: 08 July 2016 Carlito B. Lebrilla2,4 & Bart C. Weimer1 Complex glycans cover the gut epithelial surface to protect the cell from the environment. Invasive pathogens must breach the glycan layer before initiating infection. While glycan degradation is crucial for infection, this process is inadequately understood. Salmonella contains 47 glycosyl hydrolases (GHs) that may degrade the glycan. We hypothesized that keystone genes from the entire GH complement of Salmonella are required to degrade glycans to change infection. This study determined that GHs recognize the terminal monosaccharides (N-acetylneuraminic acid (Neu5Ac), galactose, mannose, and fucose) and significantly (p < 0.05) alter infection. During infection, Salmonella used its two GHs sialidase nanH and amylase malS for internalization by targeting different glycan structures. The host glycans were altered during Salmonella association via the induction of N-glycan biosynthesis pathways leading to modification of host glycans by increasing fucosylation and mannose content, while decreasing sialylation. -
Migration Dynamics in Leukocyte Transendothelial Endothelial Actin-Binding Proteins and Actin
Th eJournal of Brief Reviews Immunology Endothelial Actin-Binding Proteins and Actin Dynamics in Leukocyte Transendothelial Migration Michael Schnoor The endothelium is the first barrier that leukocytes have Ag-1 and macrophage-1 Ag or the b1-integrin very late Ag-4 to overcome during recruitment to sites of inflamed tis- on leukocytes mediate firm adhesion. Subsequently, leukocytes sues. The leukocyte extravasation cascade is a complex reach the site of transmigration by intraluminal crawling. Leu- multistep process that requires the activation of various kocytes can crawl as much as 60 mm in a macrophage-1 Ag/ adhesion molecules and signaling pathways, as well as ac- ICAM-1–dependent fashion before they transmigrate (2). tin remodeling, in both leukocytes and endothelial cells. Transmigration (also known as diapedesis) occurs either trans- Endothelial adhesion molecules, such as E-selectin or cellularly or paracellularly, with the majority of transmigration ICAM-1, are connected to the actin cytoskeleton via events being across paracellular junctions both in vivo and actin-binding proteins (ABPs). Although the contribu- in vitro (3, 4). Finally, leukocytes have to cross pericytes and tion of receptor–ligand interactions to leukocyte extrav- the basement membrane (BM) to conclude extravasation. This asation has been studied extensively, the contribution of occurs through gaps in the pericyte layer that coincide with endothelial ABPs to the regulation of leukocyte adhe- regions of the BM that contain less extracellular matrix proteins sion and transendothelial migration remains poorly un- and, therefore, pose a thinner barrier for the transmigrating derstood. This review focuses on recently published leukocyte (5, 6). All of these steps require cell movement and evidence that endothelial ABPs, such as cortactin, myo- actin cytoskeletal remodeling in both cell types involved. -
Endothelial Barrier Function and Leukocyte Transmigration in Atherosclerosis
biomedicines Review Endothelial Barrier Function and Leukocyte Transmigration in Atherosclerosis Thijs J. Sluiter 1,2 , Jaap D. van Buul 3 , Stephan Huveneers 4, Paul H. A. Quax 1,2 and Margreet R. de Vries 1,2,* 1 Department of Vascular Surgery, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands; [email protected] (T.J.S.); [email protected] (P.H.A.Q.) 2 Einthoven Laboratory for Experimental Vascular Medicine, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands 3 Sanquin Research and Landsteiner Laboratory, Leeuwenhoek Centre for Advanced Microscopy, Swammerdam Institute for Life Sciences, University of Amsterdam, 1066 CX Amsterdam, The Netherlands; [email protected] 4 Department of Medical Biochemistry, Amsterdam Cardiovascular Sciences, Amsterdam University Medical Center, Location AMC, University of Amsterdam, 1105 AZ Amsterdam, The Netherlands; [email protected] * Correspondence: [email protected]; Tel.: +31-(71)-526-5147 Abstract: The vascular endothelium is a highly specialized barrier that controls passage of fluids and migration of cells from the lumen into the vessel wall. Endothelial cells assist leukocytes to extravasate and despite the variety in the specific mechanisms utilized by different leukocytes to cross different vascular beds, there is a general principle of capture, rolling, slow rolling, arrest, crawling, and ultimately diapedesis via a paracellular or transcellular route. In atherosclerosis, the barrier function of the endothelium is impaired leading to uncontrolled leukocyte extravasation and Citation: Sluiter, T.J.; van Buul, J.D.; vascular leakage. This is also observed in the neovessels that grow into the atherosclerotic plaque Huveneers, S.; Quax, P.H.A.; de Vries, leading to intraplaque hemorrhage and plaque destabilization. -
Neuraminidase Inhibitor Zanamivir Ameliorates Collagen-Induced Arthritis
International Journal of Molecular Sciences Article Neuraminidase Inhibitor Zanamivir Ameliorates Collagen-Induced Arthritis Bettina Sehnert 1,*, Juliane Mietz 1, Rita Rzepka 1, Stefanie Buchholz 1, Andrea Maul-Pavicic 1, Sandra Schaffer 1, Falk Nimmerjahn 2 and Reinhard E. Voll 1,* 1 Department of Rheumatology and Clinical Immunology, Medical Center–University of Freiburg, Faculty of Medicine, University of Freiburg, 79106 Freiburg, Germany; [email protected] (J.M.); [email protected] (R.R.); [email protected] (S.B.); [email protected] (A.M.-P.); [email protected] (S.S.) 2 Department of Biology, Institute of Genetics, Friedrich-Alexander University Erlangen-Nürnberg (FAU), 91058 Erlangen, Germany; [email protected] * Correspondence: [email protected] (B.S.); [email protected] (R.E.V.); Tel.: +49-761-270-71021 (B.S.); +49-761-270-34490 (R.E.V.) Abstract: Altered sialylation patterns play a role in chronic autoimmune diseases such as rheumatoid arthritis (RA). Recent studies have shown the pro-inflammatory activities of immunoglobulins (Igs) with desialylated sugar moieties. The role of neuraminidases (NEUs), enzymes which are responsible for the cleavage of terminal sialic acids (SA) from sialoglycoconjugates, is not fully understood in RA. We investigated the impact of zanamivir, an inhibitor of the influenza virus neuraminidase, and mammalian NEU2/3 on clinical outcomes in experimental arthritides studies. The severity of arthritis was monitored and IgG titers were measured by ELISA. (2,6)-linked SA was determined on IgG by ELISA and on cell surfaces by flow cytometry. Zanamivir at a dose of 100 mg/kg (zana- Citation: Sehnert, B.; Mietz, J.; 100) significantly ameliorated collagen-induced arthritis (CIA), whereas zana-100 was ineffective Rzepka, R.; Buchholz, S.; in serum transfer-induced arthritis. -
RT² Profiler PCR Array (Rotor-Gene® Format) Human Glycosylation
RT² Profiler PCR Array (Rotor-Gene® Format) Human Glycosylation Cat. no. 330231 PAHS-046ZR For pathway expression analysis Format For use with the following real-time cyclers RT² Profiler PCR Array, Rotor-Gene Q, other Rotor-Gene cyclers Format R Description The Human Glycosylation RT² Profiler PCR Array profiles the expression of 84 key genes encoding enzymes that post-translationally add and remove sugar residues to and from proteoglycans and glycoproteins. The process of generating and altering mature N-linked and O-linked glycans essential for proteoglycan and glycoprotein function requires not only glycosyltransferase activity for de novo oligosaccharide synthesis, but also both glycosidase and glycosyltransferase activity for remodeling. Increased expression of cell surface and secreted proteins, whether by stimulation of cells to differentiate or proliferate or by exogenous over-expression, requires more glycosyltransferase and glycosidase activity, contributed at least in part by their own increased gene expression. This array includes glycosyltransferase and glycosidase genes for several important sugars: galactose, glucose, mannose, N-acetylgalactosamine, N-acetylglucosamine, fucose, and sialic acid. Some of the represented enzymes also act on glycosphingolipids. Using real-time PCR, you can easily and reliably analyze the expression of a focused panel of genes involved in protein glycosylation with this array. For further details, consult the RT² Profiler PCR Array Handbook. Shipping and storage RT² Profiler PCR Arrays in the Rotor-Gene format are shipped at ambient temperature, on dry ice, or blue ice packs depending on destination and accompanying products. For long term storage, keep plates at –20°C. Note: Ensure that you have the correct RT² Profiler PCR Array format for your real-time cycler (see table above). -
An Intrinsic Mechanism of Secreted Protein Aging and Turnover
An intrinsic mechanism of secreted protein aging and turnover Won Ho Yanga,b, Peter V. Aziza,b, Douglas M. Heithoffc, Michael J. Mahanc, Jeffrey W. Smithb, and Jamey D. Martha,b,c,1 aCenter for Nanomedicine, University of California, Santa Barbara, CA 93106; bSanford–Burnham–Prebys Medical Discovery Institute, La Jolla, CA 92037; and cDepartment of Molecular, Cellular, and Developmental Biology, University of California, Santa Barbara, CA 93106 Edited by Kevin P. Campbell, University of Iowa Carver College of Medicine, Iowa City, IA, and approved September 23, 2015 (received for review August 4, 2015) The composition and functions of the secreted proteome are con- activity levels that change in disease (9). We investigated whether trolled by the life spans of different proteins. However, unlike the normal activities of circulating glycosidases may hydrolyze intracellular protein fate, intrinsic factors determining secreted pro- N-glycan linkages attached to secreted proteins, thereby generat- tein aging and turnover have not been identified and characterized. ing multivalent ligands of endocytic lectin receptors in contribut- Almost all secreted proteins are posttranslationally modified with the ing to a mechanism of secreted protein aging and turnover. covalent attachment of N-glycans. We have discovered an intrinsic Results mechanism of secreted protein aging and turnover linked to the stepwise elimination of saccharides attached to the termini of N-Glycan Remodeling in the Aging of Secreted Proteins. Most se- N-glycans. Endogenous glycosidases, including neuraminidase 1 (Neu1), creted proteins are modified with N-glycans before entry into cir- neuraminidase 3 (Neu3), beta-galactosidase 1 (Glb1), and hexosamini- culatory systems. We isolated secreted proteins among platelet-poor dase B (HexB), possess hydrolytic activities that temporally remodel plasma following i.v.