On Some Desmids from Koshi Tappu Wildlife Reserve, Nepal
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Lateral Gene Transfer of Anion-Conducting Channelrhodopsins Between Green Algae and Giant Viruses
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.15.042127; this version posted April 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 5 Lateral gene transfer of anion-conducting channelrhodopsins between green algae and giant viruses Andrey Rozenberg 1,5, Johannes Oppermann 2,5, Jonas Wietek 2,3, Rodrigo Gaston Fernandez Lahore 2, Ruth-Anne Sandaa 4, Gunnar Bratbak 4, Peter Hegemann 2,6, and Oded 10 Béjà 1,6 1Faculty of Biology, Technion - Israel Institute of Technology, Haifa 32000, Israel. 2Institute for Biology, Experimental Biophysics, Humboldt-Universität zu Berlin, Invalidenstraße 42, Berlin 10115, Germany. 3Present address: Department of Neurobiology, Weizmann 15 Institute of Science, Rehovot 7610001, Israel. 4Department of Biological Sciences, University of Bergen, N-5020 Bergen, Norway. 5These authors contributed equally: Andrey Rozenberg, Johannes Oppermann. 6These authors jointly supervised this work: Peter Hegemann, Oded Béjà. e-mail: [email protected] ; [email protected] 20 ABSTRACT Channelrhodopsins (ChRs) are algal light-gated ion channels widely used as optogenetic tools for manipulating neuronal activity 1,2. Four ChR families are currently known. Green algal 3–5 and cryptophyte 6 cation-conducting ChRs (CCRs), cryptophyte anion-conducting ChRs (ACRs) 7, and the MerMAID ChRs 8. Here we 25 report the discovery of a new family of phylogenetically distinct ChRs encoded by marine giant viruses and acquired from their unicellular green algal prasinophyte hosts. -
Carbohydrate Release by a Subtropical Strain of Spondylosium Pygmaeum (Zygnematophyceae): Influence of Nitrate Availability and Culture Aging1
J. Phycol. 46, 477–483 (2010) Ó 2010 Phycological Society of America DOI: 10.1111/j.1529-8817.2010.00823.x CARBOHYDRATE RELEASE BY A SUBTROPICAL STRAIN OF SPONDYLOSIUM PYGMAEUM (ZYGNEMATOPHYCEAE): INFLUENCE OF NITRATE AVAILABILITY AND CULTURE AGING1 Fernanda Reinhardt Piedras Po´s-graduac¸a˜o em Oceanografia Biolo´gica, Instituto de Oceanografia, Universidade Federal de Rio Grande- FURG, Av. Italia, Km 8, Rio Grande, RS 96201-900, Brasil Paulo Roberto Martins Baisch, Maria Isabel Correˆa da Silva Machado Laborato´rio de Oceanografia Geolo´gica Instituto de Oceanografia, Universidade Federal de Rio Grande- FURG, Av. Italia, Km 8, Rio Grande, RS 96201-900, Brasil Armando Augusto Henriques Vieira Departamento de Botanica, Unversidade Federal de Sao Carlos, Via Washington Luis, Km 235, Sao Carlos, SP 13565-905, Brasil and Danilo Giroldo2 Laborato´rio de Botaˆnica Criptogaˆmica, Instituto de Cieˆncias Biolo´gicas, Universidade Federal de Rio Grande – FURG, Av. Italia, Km 8, Rio Grande, RS 96201-900, Brasil This paper describes the influence of nitrate avail- availability. EPS molecules >12 kDa were composed ability on growth and release of dissolved free and mainly of xylose, fucose, and galactose, as for other combined carbohydrates (DFCHOs and DCCHOs) desmids. However, a high N-acetyl-glucosamine con- produced by Spondylosium pygmaeum (Cooke) W. tent was found, uniquely among desmid EPSs. West (Zygnematophyceae). This strain was isolated Key index words: carbohydrate; desmid; growth; from a subtropical shallow pond, located at the nitrate; Spondylosium extreme south of Brazil (Rio Grande, RS). Experi- ments were carried out in batch culture, comparing Abbreviations: Ara, arabinose; DCCHO, dissolved two initial nitrate levels (10 ⁄ 100 lM) in the medium. -
Freshwater Algae in Britain and Ireland - Bibliography
Freshwater algae in Britain and Ireland - Bibliography Floras, monographs, articles with records and environmental information, together with papers dealing with taxonomic/nomenclatural changes since 2003 (previous update of ‘Coded List’) as well as those helpful for identification purposes. Theses are listed only where available online and include unpublished information. Useful websites are listed at the end of the bibliography. Further links to relevant information (catalogues, websites, photocatalogues) can be found on the site managed by the British Phycological Society (http://www.brphycsoc.org/links.lasso). Abbas A, Godward MBE (1964) Cytology in relation to taxonomy in Chaetophorales. Journal of the Linnean Society, Botany 58: 499–597. Abbott J, Emsley F, Hick T, Stubbins J, Turner WB, West W (1886) Contributions to a fauna and flora of West Yorkshire: algae (exclusive of Diatomaceae). Transactions of the Leeds Naturalists' Club and Scientific Association 1: 69–78, pl.1. Acton E (1909) Coccomyxa subellipsoidea, a new member of the Palmellaceae. Annals of Botany 23: 537–573. Acton E (1916a) On the structure and origin of Cladophora-balls. New Phytologist 15: 1–10. Acton E (1916b) On a new penetrating alga. New Phytologist 15: 97–102. Acton E (1916c) Studies on the nuclear division in desmids. 1. Hyalotheca dissiliens (Smith) Bréb. Annals of Botany 30: 379–382. Adams J (1908) A synopsis of Irish algae, freshwater and marine. Proceedings of the Royal Irish Academy 27B: 11–60. Ahmadjian V (1967) A guide to the algae occurring as lichen symbionts: isolation, culture, cultural physiology and identification. Phycologia 6: 127–166 Allanson BR (1973) The fine structure of the periphyton of Chara sp. -
Tesis: Desmidiales De Algunas Localidades Del Estado De México
UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO FACULTAD DE ESTUDIOS SUPERIORES IZTACALA DESMIDIALES DE ALGUNAS LOCALIDADES DEL ESTADO DE MÉXICO T E S I S QUE PARA OBTENER EL TITULO DE: B I Ó L O G O P R E S E N T A: Gabriela Jiménez Arreola DIRECTORA DE TESIS M. EN C. GLORIA GARDUÑO SOLÓRZANO HERBARIO IZTA SECCIÓN DE FICOLOGÍA Tlalnepantla, Edo. Méx. 2005 1 UNAM – Dirección General de Bibliotecas Tesis Digitales Restricciones de uso DERECHOS RESERVADOS © PROHIBIDA SU REPRODUCCIÓN TOTAL O PARCIAL Todo el material contenido en esta tesis esta protegido por la Ley Federal del Derecho de Autor (LFDA) de los Estados Unidos Mexicanos (México). El uso de imágenes, fragmentos de videos, y demás material que sea objeto de protección de los derechos de autor, será exclusivamente para fines educativos e informativos y deberá citar la fuente donde la obtuvo mencionando el autor o autores. Cualquier uso distinto como el lucro, reproducción, edición o modificación, será perseguido y sancionado por el respectivo titular de los Derechos de Autor. Para mis Padres y Hermanas, que son mi mundo, mi felicidad y mi conciencia. 2 AGRADECIMIENTOS A DIOS porque gracias a ÉL existo. A mis Padres Gilberto Jiménez y Antonia Arreola B. por todo el apoyo emocional y económico, gracias por permitirme tomar mis propias decisiones, por sus enseñanzas, por su fuerza, por sus esperanzas, por el cariño inagotable y sobre todo por su paciencia. A mis queridas hermanas; Eva, Bety, Titi y Angi, por ser mis mejores amigas, por su preocupación y lo mas importante por creer en mi. -
Changes in Algal Species Composition of Alpine Lake Nesamovyte (Eastern Carpathians, Ukraine) from 100 Years Ago to Present †
Proceedings Changes in Algal Species Composition of Alpine Lake Nesamovyte (Eastern Carpathians, Ukraine) from 100 Years Ago to Present † Petro M. Tsarenko 1, Olena P. Bilous 2,*, Olha M. Kryvosheia-Zakharova 1, Halyna H. Lilitska 1, Yuriy Malakhov 3 and Janne Soininen 4 1 M.G. Kholodny Institute of Botany, National Academy of Sciences of Ukraine, Tereschenkivska Str. 2, 01004 Kyiv, Ukraine; [email protected] (P.M.T.); [email protected] (O.M.K-Z.); [email protected] (H.H.L.) 2 Institute of Hydrobiology, NAS of Ukraine, Geroiv Stalingrada 12, 04210 Kyiv, Ukraine 3 Ecocare Ukraine, Kyiv, Ukraine; [email protected] 4 Department of Geosciences and Geography, University of Helsinki, 00100 Helsinki, Finland; [email protected] * Correspondence: [email protected] † Presented at the 1st International Electronic Conference on Biological Diversity, Ecology and Evolution, 15– 31 March 2021; Available online: https://bdee2021.sciforum.net/. Abstract: The species diversity of algae in different ecotopes of the alpine lake Nesamovyte was studied. In total, 233 species were identified comprising globally and regionally rare species. We also documented a temporal change in species composition from the first investigations conducted 100 years ago to present. An increase in the species diversity of Bacillariophyta and Chlorophyta, the constancy of the number of Euglenophyta and Cyanoprocaryota species, a decrease in the composition Citation: Tsarenko, P.M.; Bilous, of Charophyta and the disappearance of Dinophyta species were revealed. We further documented O.P.; Kryvosheia-Zakharova, O.M.; Lilitska, H.H.; Malakhov, Y.; Soin- some changes in the most abundant species and indicator species for certain limnological condi- inen, J. -
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Cryptogamie,Algol., 2009, 30 (4): 343-345 © 2009 Adac. Tous droits réservés Book reviews PHANG S-M, LEWMANOMENT K & LIM P-E. 2008 — Taxonomy of South- east Asian Seaweeds . Edited by Siew-Moi Phang,Khanjanapaj Lewmanomont and Phaik-Eem Lim. Institute of Ocean and Earth Sciences (IOES),University of Malaya, Monograph Series 2. 197 p., soft- or hardcover [http://ioes.um.edu.my; ISBN: 978-967-5148-13-2; Price: RM 80 (soft cover), RM 100 (hard cover)]. The central Indo-Pacific harbours one of the most diverse seaweed floras on Earth, yet the taxonomy of marine macro-algae in these tropical to subtropical waters has remained relatively poorly studied. With this volume, three leading algal systematists in the region,Siew-Moi Phang,Khanjanapaj Lewmanomont and Phaik-Eem Lim, are providing an important outlet for taxonomic knowledge of Southeast Asian seaweeds. The book represents the proceedings of the First Taxonomy of Southeast Asian Seaweed Workshop held at the University of Malaya, Kuala Lumpur in 2008. This workshop, the first in a series to come, brought together phycologists from different countries and was intended to “keep the science of taxonomy and systematics flourishing and ensure the existence of a next generation of seaweed taxonomists in the Southeast Asian region”. The present volume contains a collection of twelve scientific contribu- tions from a long list of authors, all active researchers in seaweed biology in Southeast Asia. In particular seaweeds of Thailand, Malaysia, Indonesia, and to a lesser extent Vietnam and the South China Sea, are represented in this volume. Somewhat surprisingly, the Philippines, a country with a rich seaweed flora and a long history of phycology is only poorly represented. -
Notulae Algarum No. 111 (21 August 2019) ISSN 2009-8987 1
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Botswana), a Subtropical Flood-Pulsed Wetland
Biodiversity and Biomass of Algae in the Okavango Delta (Botswana), a Subtropical Flood-Pulsed Wetland Thesis submitted for the degree of Doctor of Philosophy by LUCA MARAZZI University College London Department of Geography University College London December 2014 I, LUCA MARAZZI, confirm that the work presented in this thesis is my own. Where information has been derived from other sources, I confirm that this has been indicated in the thesis. LUCA MARAZZI 2 ABSTRACT In freshwater bodies algae provide key ecosystem services such as food and water purification. This is the first systematic assessment of biodiversity, biomass and distribution patterns of these aquatic primary producers in the Okavango Delta (Botswana), a subtropical flood-pulsed wetland in semiarid Southern Africa. This study delivers the first estimate of algal species and genera richness at the Delta scale; 496 species and 173 genera were observed in 132 samples. A new variety of desmid (Chlorophyta) was discovered, Cosmarium pseudosulcatum var. okavangicum, and species richness estimators suggest that a further few hundred unidentified species likely live in this wetland. Rare species represent 81% of species richness and 30% of total algal biovolume. Species composition is most similar within habitat types, thus varying more significantly at the Delta scale. In seasonally inundated floodplains, algal species / genera richness and diversity are significantly higher than in permanently flooded open water habitats. The annual flood pulse has historically allowed more diverse algal communities to develop and persist in these shallower and warmer environments with higher mean nutrient levels and more substrata and more heterogenous habitats for benthic taxa. These results support the Intermediate Disturbance Hypothesis, Species-Energy Theory and Habitat Heterogeneity Diversity hypotheses. -
Diversity of Desmids in Three Thai Peat Swamps*
Biologia 63/6: 901—906, 2008 Section Botany DOI: 10.2478/s11756-008-0140-x Diversity of desmids in three Thai peat swamps* Neti Ngearnpat1, Peter F.M. Coesel2 &YuwadeePeerapornpisal1 1Department of Biology, Faculty of Science, Chiang Mai University,Chiang Mai 50200, Thailand; e-mail: [email protected], [email protected] 2Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Kruislaan 318,NL-1098 SM Amsterdam, The Netherlands; e-mail: [email protected] Abstract: Three peat swamps situated in the southern part of Thailand were investigated for their desmid flora in relation to a number of physical and chemical habitat parameters. Altogether, 99 species were encountered belonging to 22 genera. 30 species are new records for the Thai desmid flora. Laempagarung peat swamp showed the highest diversity (45 species), followed by Maikhao peat swamp (32 species) and Jud peat swamp (25 species). Despite its relatively low species richness, Jud swamp appeared to house a number of rare taxa, e.g., Micrasterias subdenticulata var. ornata, M. suboblonga var. tecta and M. tetraptera var. siamensis which can be considered Indo-Malaysian endemics. Differences in composition of the desmid flora between the three peat swamps are discussed in relation to environmental conditions. Key words: desmids; ecology; peat swamps; Indo-Malaysian region; Thailand Introduction The desmid flora of Thailand has been investigated by foreign scientists for over a hundred years. The first records of desmids were published by West & West (1901). After that there were reports by Hirano (1967, 1975, 1992), Yamagishi & Kanetsuna (1987), Coesel (2000) and Kanetsuna (2002). The checklist of algae in Thailand (Wongrat 1995) mentions 296 desmid species plus varieties, belonging to 22 different genera. -
Taxonomy and Nomenclature of the Conjugatophyceae (= Zygnematophyceae)
Review Algae 2013, 28(1): 1-29 http://dx.doi.org/10.4490/algae.2013.28.1.001 Open Access Taxonomy and nomenclature of the Conjugatophyceae (= Zygnematophyceae) Michael D. Guiry1,* 1AlgaeBase and Irish Seaweed Research Group, Ryan Institute, National University of Ireland, Galway, Ireland The conjugating algae, an almost exclusively freshwater and extraordinarily diverse group of streptophyte green algae, are referred to a class generally known as the Conjugatophyceae in Central Europe and the Zygnematophyceae elsewhere in the world. Conjugatophyceae is widely considered to be a descriptive name and Zygnematophyceae (‘Zygnemophyce- ae’) a typified name. However, both are typified names and Conjugatophyceae Engler (‘Conjugatae’) is the earlier name. Additionally, Zygnemophyceae Round is currently an invalid name and is validated here as Zygnematophyceae Round ex Guiry. The names of orders, families and genera for conjugating green algae are reviewed. For many years these algae were included in the ‘Conjugatae’, initially used as the equivalent of an order. The earliest use of the name Zygnematales appears to be by the American phycologist Charles Edwin Bessey (1845-1915), and it was he who first formally redistrib- uted all conjugating algae from the ‘Conjugatae’ to the orders Zygnematales and the Desmidiales. The family Closte- riaceae Bessey, currently encompassing Closterium and Spinoclosterium, is illegitimate as it was superfluous when first proposed, and its legitimization is herein proposed by nomenclatural conservation to facilitate use of the name. The ge- nus Debarya Wittrock, 1872 is shown to be illegitimate as it is a later homonym of Debarya Schulzer, 1866 (Ascomycota), and the substitute genus name Transeauina Guiry is proposed together with appropriate combinations for 13 species currently assigned to the genus Debarya Wittrock. -
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J. Bio. & Env. Sci. 2020 Journal of Biodiversity and Environmental Sciences (JBES) ISSN: 2220-6663 (Print) 2222-3045 (Online) Vol. 17, No. 4, p. 10-20, 2020 http://www.innspub.net RESEARCH PAPER OPEN ACCESS Preliminary checklist of desmids from Kokrajhar District, Assam, India Raju Das* BLiSS Laboratory (DBT-GoI), Govt. HS & MP School, Kokrajhar, Assam, India Article published on October 30, 2020 Key words: Desmid, Chlorophyta, Kokrajhar, Assam Abstract This paper presents a precursor in the investigation of the desmids of Kokrajhar District, Assam, India. The present study deals with the diversity of desmids from different freshwater habitats of the district. For this study samples were collected randomly from 12 different habitat around the district during January 2018 to April 2019. Seventy one species were observed comprising eleven genera: Actinotaenium (1), Arthrodesmus (3), Bambusina (1), Closterium (12), Cosmarium (16), Desmidium (4), Euastrum (6), Gonatozygon (1), Hyalotheca (1), Micrasterias (6), Netrium (1), Onychonema (1), Penium (1), Pleuroteanium (5), Spirotaenia (1), Staurastrum (6), Triplocerus (1) and Xanthidium (4). Among the observed taxa some appeared to be the new records for the state of Assam, India. *Corresponding Author: Raju Das [email protected] 10 | Das J. Bio. & Env. Sci. 2020 Introduction desmid flora. For example, in a study of desmids from Desmids are unicellular micro-organisms belonging Eastern Himalaya, Das D & Keshri JP (2012, 2013, to the division Chlorophyta and order Zygnematales 2016) reported 272 taxa under 27 genera. Thus, this (Kadiri, 2002). These are considered as the closest study aims to documents the diversity of Desmids in living relatives of land plants (Timme et al., 2012, Kokrajhar Distrct of Assam, India. -
Sexual Reproduction in Cylindrocystis Brebissonii (Ralfs) De Bary Was Observed for the First Time in Anatural Population from Sikkim, Eastern Himalayas
Cryptogamie, Algologie, 2017, 38 (1): 47-51 © 2017 Adac. Tous droits réservés Sexual reproduction in Cylindrocystisbrebissonii (Ralfs) De Bary (Charophyta: Conjugatophyceae: Desmidiaceae) in nature Debjyoti DAS a &Jai Prakash KESHRI b* aCentral National Herbarium, Botanical Survey of India, AJCB Indian Botanic Garden, Shibpur,Howrah-711109, West Bengal, India bPhycology Laboratory,UGC Center for Advance Study,Department of Botany, The University of Burdwan, Golapbag, Burdwan, West Bengal-713104, India Abstract − Complete sequence of sexual reproduction in Cylindrocystis brebissonii (Ralfs) De Bary was observed for the first time in anatural population from Sikkim, Eastern Himalayas. The observations are supported by microphotographs. Conjugation /Desmid /eastern himalaya INTRODUCTION Sexual reproduction in Conjugatophyceae occurs by the process of conjugation and it is frequently observed in certain genera of zygnemataceaelike Spirogyra, zygnema, Mougeotia, Sirogonium (Fritsch, 1935; Smith, 1950; Graham et al.,2009), in the members of Mesotaeniaceae like Cylindrocystis, Mesotaenium (Brook, 1981) and in the members of Desmidiaceae like Cosmarium, Closterium etc. Although its occurrenceintemperate countries (Brook, 1981; Wehr et al.,2015) has not been observed very frequently in nature, the condition is reverse in tropical countries like India (Turner,1892; Bharati, 1971; Hegde, 1981, 1984, 1987; Hegde &Bharati, 1980, 1983; Panikkar &Krishnan, 2005, 2006, 2007). The Indian workers observed zygospore formation in nature in genera like Cosmarium, Bambusina, Hyalotheca, Micrasterias, Xanthidium and have been induced by many workers all over the globe (Cook, 1963; Biebel, 1964, 1975; Brandhan, 1964; Biebel &Reid, 1965; Teixeira, 1974; Dubois-Tylski, 1972, 1973; Dubois-Tylski &Lacoste,1970; Lippert, 1967; Pickett-Heaps &Fowke, 1971; Blackburn &Tyler,1980, 1981, 1987; Tijlickjan &Rayburn, 1985).