The Rangtp Gradient – a GPS for the Mitotic Spindle
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Plant Rangaps Are Localized at the Nuclear Envelope in Interphase and Associated with Microtubules in Mitotic Cells
The Plant Journal (2002) 30(6), 699±709 Plant RanGAPs are localized at the nuclear envelope in interphase and associated with microtubules in mitotic cells Aniko Pay1, Katja Resch2, Hanns Frohnmeyer2, Erzsebet Fejes1, Ferenc Nagy1 and Peter Nick2,* 1Plant Biology Institute, Biological Research Center, H-6701 Szeged, PO Box 521, Hungary, and 2Institut fuÈr Biologie II/Botanik, SchaÈnzlestrasse 1, UniversitaÈt Freiburg, D-79104 Freiburg, Germany Received 17 December 2001; revised 7 March 2002; accepted 15 March 2002. *For correspondence (fax +49 761 203 2612; e-mail [email protected]). Summary In animals and yeast, the small GTP-binding protein Ran has multiple functions ± it is involved in mediating (i) the directional passage of proteins and RNA through the nuclear pores in interphase cells; and (ii) the formation of spindle asters, the polymerization of microtubules, and the re-assembly of the nuclear envelope in mitotic cells. Nucleotide binding of Ran is modulated by a series of accessory proteins. For instance, the hydrolysis of RanGTP requires stimulation by the RanGTPase protein RanGAP. Here we report the complementation of the yeast RanGAP mutant rna1 with Medicago sativa and Arabidopsis thaliana cDNAs encoding RanGAP-like proteins. Confocal laser microscopy of Arabidopsis plants overexpressing chimeric constructs of GFP with AtRanGAP1 and 2 demonstrated that the fusion protein is localized to patchy areas at the nuclear envelope of interphase cells. In contrast, the cellular distribution of RanGAPs in synchronized tobacco cells undergoing mitosis is characteristically different. Double-immuno¯uorescence shows that RanGAPs are co-localized with spindle microtubules during anaphase, with the microtubular phragmoplast and the surface of the daughter nuclei during telophase. -
Supporting Information
Supporting Information Goh et al. 10.1073/pnas.1304046110 SI Materials and Methods signal amplification kit was used to amplify the GFP signal Immunofluorescence. For immunofluorescence studies, liver tissue (Perkin-Elmer). was fixed in 4% (vol/vol) paraformaldehyde for 2 h, transferred to a 30% sucrose solution (vol/vol) overnight at 4°C, and sub- ALT and Necrotic Area Quantification. Serum alanine aminotrans- sequently frozen in optimal cutting temperature (OCT) medium. ferase (ALT) levels were measured using an ALT-SL kit (Genzyme To stain for GFP, frozen tissue sections (5 μm) were fixed in Diagnostics). To quantify necrotic cell area, liver sections were 4% paraformaldehyde (vol/vol), permeabilized, and then stained stained with H&E, and 10 random fields from each animal with anti-GFP antibody (1:1,000, Novus Biologicals). A tyramide were analyzed, using ImageJ software. Fig. S1. Immune cell repertoire of regenerating livers. (A and B) Liver regeneration after partial hepatectomy (PH) or toxin-induced injury [carbon tetra- chloride (CCl4)] is associated with recruitment of innate immune cells. Infiltration by innate immune cells was analyzed 2 d after PH or CCl4-mediated injury (n = 4 mice per group). (C and D) The percentages of adaptive immune cells were analyzed 2 d after PH and CCl4-mediated injury in wild-type (WT) BALB/cJ mice (n = 4 mice per group). (E and F) Expression of eotaxin-1 (Ccl11) after PH and/or CCl4-mediated injury (n = 3–8 mice per group and time). *P < 0.05, as de- termined by Student t test. All data are presented as mean ± SEM. -
Ran-GTP Is Non-Essential to Activate Numa for Spindle Pole Focusing, but Dynamically Polarizes HURP to Control Mitotic Spindle
bioRxiv preprint doi: https://doi.org/10.1101/473538; this version posted April 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Ran-GTP is non-essential to activate NuMA for spindle pole focusing, 2 but dynamically polarizes HURP to control mitotic spindle length 3 4 5 Kenta Tsuchiya1#, Hisato Hayashi1#, Momoko Nishina1#, Masako Okumura1#, 6 Yoshikatsu Sato1, Masato T. Kanemaki2,3, Gohta Goshima1, Tomomi Kiyomitsu1,2,4* 7 8 1 Division of Biological Science, Graduate School of Science, Nagoya University, 9 Chikusa-ku, Nagoya 464-8602, Japan. 10 2 Precursory Research for Embryonic Science and Technology (PRESTO) Program, 11 Japan Science and Technology Agency, 4-1-8 Honcho Kawaguchi, Saitama 332-0012, 12 Japan. 13 3 Department of Chromosome Science, National Institute of Genetics, Research 14 Organization of Information and Systems (ROIS), and Department of Genetics, 15 SOKENDAI (The Graduate University of Advanced Studies), Yata 1111, Mishima, 16 Shizuoka 411-8540, Japan. 17 4 Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, 18 Onna-son, Kunigami-gun, Okinawa 904-0495, Japan 19 20 # These authors contributed equally to this work. 21 * Corresponding author: 22 E-mail: [email protected] 23 Phone & Fax: +81-98-966-1609 24 Characters: 5,173 words 25 1 bioRxiv preprint doi: https://doi.org/10.1101/473538; this version posted April 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. -
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1 Exploring the male-induced female reproduction of Schistosoma mansoni in a novel medium Jipeng Wang1, Rui Chen1, James Collins1 1) UT Southwestern Medical Center. Schistosomiasis is a neglected tropical disease caused by schistosome parasites that infect over 200 million people. The prodigious egg output of these parasites is the sole driver of pathology due to infection. Female schistosomes rely on continuous pairing with male worms to fuel the maturation of their reproductive organs, yet our understanding of their sexual reproduction is limited because egg production is not sustained for more than a few days in vitro. Here, we explore the process of male-stimulated female maturation in our newly developed ABC169 medium and demonstrate that physical contact with a male worm, and not insemination, is sufficient to induce female development and the production of viable parthenogenetic haploid embryos. By performing an RNAi screen for genes whose expression was enriched in the female reproductive organs, we identify a single nuclear hormone receptor that is required for differentiation and maturation of germ line stem cells in female gonad. Furthermore, we screen genes in non-reproductive tissues that maybe involved in mediating cell signaling during the male-female interplay and identify a transcription factor gli1 whose knockdown prevents male worms from inducing the female sexual maturation while having no effect on male:female pairing. Using RNA-seq, we characterize the gene expression changes of male worms after gli1 knockdown as well as the female transcriptomic changes after pairing with gli1-knockdown males. We are currently exploring the downstream genes of this transcription factor that may mediate the male stimulus associated with pairing. -
(KPNA7), a Divergent Member of the Importin a Family of Nuclear Import
Kelley et al. BMC Cell Biology 2010, 11:63 http://www.biomedcentral.com/1471-2121/11/63 RESEARCH ARTICLE Open Access Karyopherin a7 (KPNA7), a divergent member of the importin a family of nuclear import receptors Joshua B Kelley1, Ashley M Talley1, Adam Spencer1, Daniel Gioeli2, Bryce M Paschal1,3* Abstract Background: Classical nuclear localization signal (NLS) dependent nuclear import is carried out by a heterodimer of importin a and importin b. NLS cargo is recognized by importin a, which is bound by importin b. Importin b mediates translocation of the complex through the central channel of the nuclear pore, and upon reaching the nucleus, RanGTP binding to importin b triggers disassembly of the complex. To date, six importin a family members, encoded by separate genes, have been described in humans. Results: We sequenced and characterized a seventh member of the importin a family of transport factors, karyopherin a 7 (KPNA7), which is most closely related to KPNA2. The domain of KPNA7 that binds Importin b (IBB) is divergent, and shows stronger binding to importin b than the IBB domains from of other importin a family members. With regard to NLS recognition, KPNA7 binds to the retinoblastoma (RB) NLS to a similar degree as KPNA2, but it fails to bind the SV40-NLS and the human nucleoplasmin (NPM) NLS. KPNA7 shows a predominantly nuclear distribution under steady state conditions, which contrasts with KPNA2 which is primarily cytoplasmic. Conclusion: KPNA7 is a novel importin a family member in humans that belongs to the importin a2 subfamily. KPNA7 shows different subcellular localization and NLS binding characteristics compared to other members of the importin a family. -
Small Gtpase Ran and Ran-Binding Proteins
BioMol Concepts, Vol. 3 (2012), pp. 307–318 • Copyright © by Walter de Gruyter • Berlin • Boston. DOI 10.1515/bmc-2011-0068 Review Small GTPase Ran and Ran-binding proteins Masahiro Nagai 1 and Yoshihiro Yoneda 1 – 3, * highly abundant and strongly conserved GTPase encoding ∼ 1 Biomolecular Dynamics Laboratory , Department a 25 kDa protein primarily located in the nucleus (2) . On of Frontier Biosciences, Graduate School of Frontier the one hand, as revealed by a substantial body of work, Biosciences, Osaka University, 1-3 Yamada-oka, Suita, Ran has been found to have widespread functions since Osaka 565-0871 , Japan its initial discovery. Like other small GTPases, Ran func- 2 Department of Biochemistry , Graduate School of Medicine, tions as a molecular switch by binding to either GTP or Osaka University, 2-2 Yamada-oka, Suita, Osaka 565-0871 , GDP. However, Ran possesses only weak GTPase activ- Japan ity, and several well-known ‘ Ran-binding proteins ’ aid in 3 Japan Science and Technology Agency , Core Research for the regulation of the GTPase cycle. Among such partner Evolutional Science and Technology, Osaka University, 1-3 molecules, RCC1 was originally identifi ed as a regulator of Yamada-oka, Suita, Osaka 565-0871 , Japan mitosis in tsBN2, a temperature-sensitive hamster cell line (3) ; RCC1 mediates the conversion of RanGDP to RanGTP * Corresponding author in the nucleus and is mainly associated with chromatin (4) e-mail: [email protected] through its interactions with histones H2A and H2B (5) . On the other hand, the GTP hydrolysis of Ran is stimulated by the Ran GTPase-activating protein (RanGAP) (6) , in con- Abstract junction with Ran-binding protein 1 (RanBP1) and/or the large nucleoporin Ran-binding protein 2 (RanBP2, also Like many other small GTPases, Ran functions in eukaryotic known as Nup358). -
The Role of P53 in Progression of Cutaneous Squamous Cell Carcinoma
cancers Review The Role of p53 in Progression of Cutaneous Squamous Cell Carcinoma Minna Piipponen 1,2,3,† , Pilvi Riihilä 1,2,† , Liisa Nissinen 1,2 and Veli-Matti Kähäri 1,2,* 1 Department of Dermatology, University of Turku and Turku University Hospital, Hämeentie 11 TE6, FI-20520 Turku, Finland; mmpiip@utu.fi (M.P.); pimati@utu.fi (P.R.); liinis@utu.fi (L.N.) 2 FICAN West Cancer Centre Research Laboratory, University of Turku and Turku University Hospital, Kiinamyllynkatu 10, FI-20520 Turku, Finland 3 Center for Molecular Medicine, Department of Medicine Solna, Dermatology and Venereology Division, Karolinska Institute, 17176 Stockholm, Sweden * Correspondence: veli-matti.kahari@utu.fi; Tel.: +358-2-3131600 † These authors contributed equally to this work. Simple Summary: Skin cancers are the most common types of cancer worldwide, and their incidence is increasing. Epidermal keratinocyte-derived cutaneous squamous cell carcinoma (cSCC) is the most common metastatic skin cancer, and it is associated with poor prognosis in the advanced stage. The most important risk factor for cSCC is long-term exposure to solar ultraviolet radiation, which induces oncogenic mutations in epidermal keratinocytes. The most common mutations are inactivating mutations in tumor suppressor p53, which result in accumulation of additional mutations. Recently, the role of p53 in the progression and invasion of cSCC has also been elucidated. In this review we will discuss the role of p53 in development of cSCC and as a potential new therapeutic target in advanced cSCC. Citation: Piipponen, M.; Riihilä, P.; Abstract: Skin cancers are the most common types of cancer worldwide, and their incidence is Nissinen, L.; Kähäri, V.-M. -
Exploring the Conformational Landscape and Stability of Aurora a Using Ion-Mobility Mass Spectrometry and Molecular Modelling
bioRxiv preprint doi: https://doi.org/10.1101/2021.08.30.458190; this version posted August 31, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Exploring the conformational landscape and stability of Aurora A using ion-mobility mass spectrometry and molecular modelling Lauren J. Tomlinson1, 2, Matthew Batchelor3, Joscelyn Sarsby1, Dominic P. Byrne2, Philip Brown- ridge1, Richard Bayliss3, Patrick A. Eyers2 and Claire E. Eyers1, 2*. 1 Centre for Proteome Research, Department of Biochemistry & Systems Biology, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool, L69 7ZB, U.K. 2 Department of Biochemistry & Systems Biology, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, U.K. 3 Astbury Centre for Structural Molecular Biology, School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, U.K. *Correspondence: Claire E. Eyers ([email protected]) ABSTRACT: Protein kinase inhibitors are proving highly effective in helping treat a number of non- communicable diseases driven by aberrant kinase signaling. They are also extremely valuable as chemical tools to help delineate cellular roles of kinase signaling complexes. The binding of small molecule inhibitors induces conformational effects on kinase dynamics; evaluating the effect of such interactions can assist in developing specific inhibitors and is deemed imperative to under- stand both inhibition and resistance mechanisms. Using gas-phase ion mobility-mass spectrome- try (IM-MS) we characterized changes in the conformational landscape and stability of the protein kinase Aurora A (Aur A) driven by binding of the physiological activator TPX2 or small molecule inhibition. -
Kif15 Cooperates with Eg5 to Promote Bipolar Spindle Assembly
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Current Biology 19, 1703–1711, November 3, 2009 ª2009 Elsevier Ltd All rights reserved DOI 10.1016/j.cub.2009.08.027 Article Kif15 Cooperates with Eg5 to Promote Bipolar Spindle Assembly Marvin E. Tanenbaum,1 Libor Macu˚ rek,1 Aniek Janssen,1 Eg5 activity does not appear to be required in mammalian cells Erica F. Geers,1 Mo´ nica Alvarez-Ferna´ndez,1 for the maintenance of a bipolar spindle in metaphase [11]. and Rene´ H. Medema1,* Together, these results indicate that additional motors might 1Department of Medical Oncology and Cancer Genomics cooperate with Eg5 to promote bipolar spindle assembly. Centre, University Medical Center Utrecht, Universiteitsweg One motor that has been implicated in spindle bipolarity is 100, 3584 CG Utrecht, The Netherlands the kinesin-12 motor Xklp2: addition of a dominant-negative construct of Xklp2 to Xenopus egg extracts resulted in the formation of monopolar spindles [12]. However, subsequent Summary experiments using protein depletion showed that normal bipolar spindles form after removal of >98% of Xklp2 from Background: The formation of a bipolar spindle is an essential egg extracts [13], strongly suggesting that Xklp2 is in fact step during cell division. Bipolar spindle assembly is driven by not essential for spindle bipolarity. Similarly, depletion of the highly conserved microtubule motor Eg5 (kinesin-5), which Xklp2 does not inhibit bipolar spindle assembly around chro- can slide antiparallel microtubules apart to drive centrosome matin beads [14], and RNA interference (RNAi)-mediated separation. -
Human Rangtpase-Activating Protein Rangapi Is a Homologue of Yeast Rnalp Involved in Mrna Processing and Transport (TC4/Rccl/Fi*Gl/Nucleocytoplasmic Transport) F
Proc. Natl. Acad. Sci. USA Vol. 92, pp. 1749-1753, February 1995 Biochemistry Human RanGTPase-activating protein RanGAPi is a homologue of yeast Rnalp involved in mRNA processing and transport (TC4/RCCl/fi*gl/nucleocytoplasmic transport) F. RALF BISCHOFF, HEIKE KREBBER, TORE KEMPF, INGRID HERMES, AND HERWIG PONSTINGL Division for Molecular Biology of Mitosis, German Cancer Research Center, POB 101949, D-69009 Heidelberg, Germany Communicated by Hans Neurath, University of Washington, Seattle, WA, November 22, 1994 ABSTRACT RanGAPI is the GTPase activator for the parallel to our work on human RanGAP1 we have purified the nuclear Ras-related regulatory protein Ran, converting it to major RanGAP activity from Sc. pombe cells and identified it the putatively inactive GDP-bound state. Here, we report the to be Rnalp. amino acid sequence of RanGAPI, derived from cDNA and peptide sequences. We found it to be homologous to murine Fugl, implicated in early embryonic development, and to MATERIALS AND METHODS Rnalp from Saccharomyces cerevisiae and Schizosaccharomyces Purification of Rnalp from Sc. pombe. The Sc. pombe strain pombe. Mutations of budding yeast RNA] are known to result 972h-, provided by Jorg D. Hoheisel (German Cancer Re- in defects in RNA processing and nucleocytoplasmic mRNA search Center, Heidelberg), was grown to a density of OD6wi transport. Concurrently, we have isolated Rnalp as the major = 1 in M9 minimal medium (18). The cells were collected by RanGAP activity from Sc. pombe. Both this protein and re- 10-min centrifugation at 5000 x g, and spheroblasts were combinant Rnalp were found to stimulate RanGTPase activ- prepared as described by Melchior et al. -
Allosteric Modulation of a Human Protein Kinase with Monobodies
Allosteric modulation of a human protein kinase with monobodies Adelajda Zorbaa,b,1,2, Vy Nguyena,b,1,3, Akiko Koidec,d, Marc Hoembergera,b,2, Yuejiao Zhenga,b,4, Steffen Kuttera,b,5, Chansik Kima,b, Shohei Koidec,e,6, and Dorothee Kerna,b,6 aDepartment of Biochemistry, Brandeis University, Waltham, MA 02454; bHoward Hughes Medical Institute, Brandeis University, Waltham, MA 02454; cPerlmutter Cancer Center, New York University Langone Health, New York, NY 10016; dDepartment of Medicine, New York University School of Medicine, New York, NY 10016; and eDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY 10016 Edited by Joseph Puglisi, Stanford University School of Medicine, Stanford, CA, and approved June 5, 2019 (received for review April 10, 2019) Despite being the subject of intense effort and scrutiny, kinases as binders with high specificity and affinity to diverse targets have have proven to be consistently challenging targets in inhibitor been developed, some of which employ quite small interaction drug design. A key obstacle has been promiscuity and consequent epitopes (14, 15). We select a series of monobodies that bind adverse effects of drugs targeting the ATP binding site. Here we tightly to the naturally occurring allosteric activation pocket of introduce an approach to controlling kinase activity by using AurA, and importantly, elicit a range of kinase activity from monobodies that bind to the highly specific regulatory allosteric strong inhibition to strong activation. Quantitative character- pocket of the oncoprotein Aurora A (AurA) kinase, thereby offer- ization of the monobody–AurA interactions and enzyme activity ing the potential for more specific kinase modulators. -
Nucleocytoplasmic Transport: Regulatory Mechanisms and the Implications in Neurodegeneration
International Journal of Molecular Sciences Review Nucleocytoplasmic Transport: Regulatory Mechanisms and the Implications in Neurodegeneration Baojin Ding * and Masood Sepehrimanesh Department of Biology, University of Louisiana at Lafayette, 410 East Saint Mary Boulevard, Lafayette, LA 70503, USA; [email protected] * Correspondence: [email protected] Abstract: Nucleocytoplasmic transport (NCT) across the nuclear envelope is precisely regulated in eukaryotic cells, and it plays critical roles in maintenance of cellular homeostasis. Accumulating evidence has demonstrated that dysregulations of NCT are implicated in aging and age-related neurodegenerative diseases, including amyotrophic lateral sclerosis (ALS), frontotemporal dementia (FTD), Alzheimer’s disease (AD), and Huntington disease (HD). This is an emerging research field. The molecular mechanisms underlying impaired NCT and the pathogenesis leading to neurodegener- ation are not clear. In this review, we comprehensively described the components of NCT machinery, including nuclear envelope (NE), nuclear pore complex (NPC), importins and exportins, RanGTPase and its regulators, and the regulatory mechanisms of nuclear transport of both protein and transcript cargos. Additionally, we discussed the possible molecular mechanisms of impaired NCT underlying aging and neurodegenerative diseases, such as ALS/FTD, HD, and AD. Keywords: Alzheimer’s disease; amyotrophic lateral sclerosis; Huntington disease; neurodegenera- tive diseases; nuclear pore complex; nucleocytoplasmic transport; Ran GTPase Citation: Ding, B.; Sepehrimanesh, M. Nucleocytoplasmic Transport: Regulatory Mechanisms and the Implications in Neurodegeneration. 1. Introduction Int. J. Mol. Sci. 2021, 22, 4165. As a hallmark of eukaryotic cells, the genetic materials are separated from the cyto- https://doi.org/10.3390/ijms plasmic contents by a highly regulated membrane, called nuclear envelope (NE), which 22084165 has two concentric bilayer membranes, the inner nuclear membrane (INM), and outer nuclear membrane (ONM).