Ircinia Strobilina (Black-Ball Sponge)
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Appendix: Some Important Early Collections of West Indian Type Specimens, with Historical Notes
Appendix: Some important early collections of West Indian type specimens, with historical notes Duchassaing & Michelotti, 1864 between 1841 and 1864, we gain additional information concerning the sponge memoir, starting with the letter dated 8 May 1855. Jacob Gysbert Samuel van Breda A biography of Placide Duchassaing de Fonbressin was (1788-1867) was professor of botany in Franeker (Hol published by his friend Sagot (1873). Although an aristo land), of botany and zoology in Gent (Belgium), and crat by birth, as we learn from Michelotti's last extant then of zoology and geology in Leyden. Later he went to letter to van Breda, Duchassaing did not add de Fon Haarlem, where he was secretary of the Hollandsche bressin to his name until 1864. Duchassaing was born Maatschappij der Wetenschappen, curator of its cabinet around 1819 on Guadeloupe, in a French-Creole family of natural history, and director of Teyler's Museum of of planters. He was sent to school in Paris, first to the minerals, fossils and physical instruments. Van Breda Lycee Louis-le-Grand, then to University. He finished traveled extensively in Europe collecting fossils, especial his studies in 1844 with a doctorate in medicine and two ly in Italy. Michelotti exchanged collections of fossils additional theses in geology and zoology. He then settled with him over a long period of time, and was received as on Guadeloupe as physician. Because of social unrest foreign member of the Hollandsche Maatschappij der after the freeing of native labor, he left Guadeloupe W etenschappen in 1842. The two chief papers of Miche around 1848, and visited several islands of the Antilles lotti on fossils were published by the Hollandsche Maat (notably Nevis, Sint Eustatius, St. -
Supplementary Materials: Patterns of Sponge Biodiversity in the Pilbara, Northwestern Australia
Diversity 2016, 8, 21; doi:10.3390/d8040021 S1 of S3 9 Supplementary Materials: Patterns of Sponge Biodiversity in the Pilbara, Northwestern Australia Jane Fromont, Muhammad Azmi Abdul Wahab, Oliver Gomez, Merrick Ekins, Monique Grol and John Norman Ashby Hooper 1. Materials and Methods 1.1. Collation of Sponge Occurrence Data Data of sponge occurrences were collated from databases of the Western Australian Museum (WAM) and Atlas of Living Australia (ALA) [1]. Pilbara sponge data on ALA had been captured in a northern Australian sponge report [2], but with the WAM data, provides a far more comprehensive dataset, in both geographic and taxonomic composition of sponges. Quality control procedures were undertaken to remove obvious duplicate records and those with insufficient or ambiguous species data. Due to differing naming conventions of OTUs by institutions contributing to the two databases and the lack of resources for physical comparison of all OTU specimens, a maximum error of ± 13.5% total species counts was determined for the dataset, to account for potentially unique (differently named OTUs are unique) or overlapping OTUs (differently named OTUs are the same) (157 potential instances identified out of 1164 total OTUs). The amalgamation of these two databases produced a complete occurrence dataset (presence/absence) of all currently described sponge species and OTUs from the region (see Table S1). The dataset follows the new taxonomic classification proposed by [3] and implemented by [4]. The latter source was used to confirm present validities and taxon authorities for known species names. The dataset consists of records identified as (1) described (Linnean) species, (2) records with “cf.” in front of species names which indicates the specimens have some characters of a described species but also differences, which require comparisons with type material, and (3) records as “operational taxonomy units” (OTUs) which are considered to be unique species although further assessments are required to establish their taxonomic status. -
Caribbean Sponge Recruitment and Growth on Coral Reef and Mangro E Sites in Belize
)ORULGD6WDWH8QLYHUVLW\/LEUDULHV 2019 Caribbean sponge recruitment and growth on coral reef and mangrove sites in Belize Connor Daniel O'Halloran Follow this and additional works at DigiNole: FSU's Digital Repository. For more information, please contact [email protected] THE FLORIDA STATE UNIVERSITY COLLEGE OF ARTS & SCIENCES CARIBBEAN SPONGE RECRUITMENT AND GROWTH ON CORAL REEF AND MANGROVE SITES IN BELIZE By CONNOR O’HALLORAN A Thesis submitted to the Department of Biological Sciences in partial fulfillment of the requirements for graduation with Honors in the Major Degree Awarded: Spring 2019 2 The members of the Defense Committee approve the thesis of Connor O’Halloran defended on April 25, 2019. Dr. Janie Wulff Thesis Director Dr. Sven Kranz Outside Committee Member Dr. Andrew Rassweiler Committee Member 3 Abstract: Sponges play important roles in supporting coastal marine ecosystem health and have been shown to have particularly important ecological significance in both mangrove and reef ecosystems where they are found abundantly. This study aims to compare how recruitment differs between these habitats by observing recruitment rate, species composition, and community dynamics on recruitment surfaces placed in each location over 3 years. This study also aims to analyze the growth rates of individuals of 4 of the most common species of Caribbean reef sponges. This was done by measuring the same individuals of the 4 species at least annually over 5 years, while leaving them undisturbed in the field. This thesis was based on a dataset previously collected which included community composition data and size distribution data of sponges. Over 3 years, a total of 20 species and 13 species were identified on the recruitment substrata that were supplied in the reef site and the mangrove site respectively. -
Florida Keys Species List
FKNMS Species List A B C D E F G H I J K L M N O P Q R S T 1 Marine and Terrestrial Species of the Florida Keys 2 Phylum Subphylum Class Subclass Order Suborder Infraorder Superfamily Family Scientific Name Common Name Notes 3 1 Porifera (Sponges) Demospongia Dictyoceratida Spongiidae Euryspongia rosea species from G.P. Schmahl, BNP survey 4 2 Fasciospongia cerebriformis species from G.P. Schmahl, BNP survey 5 3 Hippospongia gossypina Velvet sponge 6 4 Hippospongia lachne Sheepswool sponge 7 5 Oligoceras violacea Tortugas survey, Wheaton list 8 6 Spongia barbara Yellow sponge 9 7 Spongia graminea Glove sponge 10 8 Spongia obscura Grass sponge 11 9 Spongia sterea Wire sponge 12 10 Irciniidae Ircinia campana Vase sponge 13 11 Ircinia felix Stinker sponge 14 12 Ircinia cf. Ramosa species from G.P. Schmahl, BNP survey 15 13 Ircinia strobilina Black-ball sponge 16 14 Smenospongia aurea species from G.P. Schmahl, BNP survey, Tortugas survey, Wheaton list 17 15 Thorecta horridus recorded from Keys by Wiedenmayer 18 16 Dendroceratida Dysideidae Dysidea etheria species from G.P. Schmahl, BNP survey; Tortugas survey, Wheaton list 19 17 Dysidea fragilis species from G.P. Schmahl, BNP survey; Tortugas survey, Wheaton list 20 18 Dysidea janiae species from G.P. Schmahl, BNP survey; Tortugas survey, Wheaton list 21 19 Dysidea variabilis species from G.P. Schmahl, BNP survey 22 20 Verongida Druinellidae Pseudoceratina crassa Branching tube sponge 23 21 Aplysinidae Aplysina archeri species from G.P. Schmahl, BNP survey 24 22 Aplysina cauliformis Row pore rope sponge 25 23 Aplysina fistularis Yellow tube sponge 26 24 Aplysina lacunosa 27 25 Verongula rigida Pitted sponge 28 26 Darwinellidae Aplysilla sulfurea species from G.P. -
Photographic Identification Guide to Some Common Marine Invertebrates of Bocas Del Toro, Panama
Caribbean Journal of Science, Vol. 41, No. 3, 638-707, 2005 Copyright 2005 College of Arts and Sciences University of Puerto Rico, Mayagu¨ez Photographic Identification Guide to Some Common Marine Invertebrates of Bocas Del Toro, Panama R. COLLIN1,M.C.DÍAZ2,3,J.NORENBURG3,R.M.ROCHA4,J.A.SÁNCHEZ5,A.SCHULZE6, M. SCHWARTZ3, AND A. VALDÉS7 1Smithsonian Tropical Research Institute, Apartado Postal 0843-03092, Balboa, Ancon, Republic of Panama. 2Museo Marino de Margarita, Boulevard El Paseo, Boca del Rio, Peninsula de Macanao, Nueva Esparta, Venezuela. 3Smithsonian Institution, National Museum of Natural History, Invertebrate Zoology, Washington, DC 20560-0163, USA. 4Universidade Federal do Paraná, Departamento de Zoologia, CP 19020, 81.531-980, Curitiba, Paraná, Brazil. 5Departamento de Ciencias Biológicas, Universidad de los Andes, Carrera 1E No 18A – 10, Bogotá, Colombia. 6Smithsonian Marine Station, 701 Seaway Drive, Fort Pierce, FL 34949, USA. 7Natural History Museum of Los Angeles County, 900 Exposition Boulevard, Los Angeles, California 90007, USA. This identification guide is the result of intensive sampling of shallow-water habitats in Bocas del Toro during 2003 and 2004. The guide is designed to aid in identification of a selection of common macroscopic marine invertebrates in the field and includes 95 species of sponges, 43 corals, 35 gorgonians, 16 nem- erteans, 12 sipunculeans, 19 opisthobranchs, 23 echinoderms, and 32 tunicates. Species are included here on the basis on local abundance and the availability of adequate photographs. Taxonomic coverage of some groups such as tunicates and sponges is greater than 70% of species reported from the area, while coverage for some other groups is significantly less and many microscopic phyla are not included. -
The Evolution of the Mitochondrial Genomes of Calcareous Sponges and Cnidarians Ehsan Kayal Iowa State University
Iowa State University Capstones, Theses and Graduate Theses and Dissertations Dissertations 2012 The evolution of the mitochondrial genomes of calcareous sponges and cnidarians Ehsan Kayal Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/etd Part of the Evolution Commons, and the Molecular Biology Commons Recommended Citation Kayal, Ehsan, "The ve olution of the mitochondrial genomes of calcareous sponges and cnidarians" (2012). Graduate Theses and Dissertations. 12621. https://lib.dr.iastate.edu/etd/12621 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. The evolution of the mitochondrial genomes of calcareous sponges and cnidarians by Ehsan Kayal A dissertation submitted to the graduate faculty in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Major: Ecology and Evolutionary Biology Program of Study Committee Dennis V. Lavrov, Major Professor Anne Bronikowski John Downing Eric Henderson Stephan Q. Schneider Jeanne M. Serb Iowa State University Ames, Iowa 2012 Copyright 2012, Ehsan Kayal ii TABLE OF CONTENTS ABSTRACT .......................................................................................................................................... -
Host Genetics and Geography Influence Microbiome Composition in the Sponge Ircinia Campana Sarah M
Old Dominion University ODU Digital Commons Biological Sciences Faculty Publications Biological Sciences 7-2019 Host Genetics and Geography Influence Microbiome Composition in the Sponge Ircinia campana Sarah M. Griffiths Rachael E. Antwis Luca Lenzi Anita Lucaci Donald C. Behringer See next page for additional authors Follow this and additional works at: https://digitalcommons.odu.edu/biology_fac_pubs Part of the Biology Commons, and the Genetics Commons Repository Citation Griffiths, Sarah M.; Antwis, Rachael E.; Lenzi, Luca; Lucaci, Anita; Behringer, Donald C.; Butler, Mark J.; and Preziosi, Richard F., "Host Genetics and Geography Influence Microbiome Composition in the Sponge Ircinia campana" (2019). Biological Sciences Faculty Publications. 385. https://digitalcommons.odu.edu/biology_fac_pubs/385 Original Publication Citation Griffiths, S. M., Antwis, R. E., Lenzi, L., Lucaci, A., Behringer, D. C., Butler IV, M. J., & Preziosi, R. F. (2019). Host genetics and geography influence microbiome composition in the sponge Ircinia campana. Journal of Animal Ecology. doi:10.1111/ 1365-2656.13065 This Article is brought to you for free and open access by the Biological Sciences at ODU Digital Commons. It has been accepted for inclusion in Biological Sciences Faculty Publications by an authorized administrator of ODU Digital Commons. For more information, please contact [email protected]. Authors Sarah M. Griffiths, Rachael E. Antwis, Luca Lenzi, Anita Lucaci, Donald C. Behringer, Mark J. Butler, and Richard F. Preziosi This article is available at ODU Digital Commons: https://digitalcommons.odu.edu/biology_fac_pubs/385 Journal of Animal Ecology DR SARAH M GRIFFITHS (Orcid ID : 0000-0003-4743-049X) DR RACHAEL ANTWIS (Orcid ID : 0000-0002-8849-8194) Article type : Research Article Editor : Ann Tate Section : Molecular Ecology Host genetics and geography influence microbiome composition in the sponge Ircinia campana Sarah M. -
Notes on Irciniidae from Korea
Boll. Mus. Ist. Biol. Univ. Genova, 68: 613-621, 2003 (2004) 613 NOTES ON IRCINIIDAE FROM KOREA CHUNG JA SIM & KYUNG JIN LEE Department of Biology, Hannam University, Ojungdong, Daedukgu, Daejeon, 306-791, Korea E-mail: [email protected] ABSTRACT Sponges of the order Dictyoceratida are poorly known in Korea. Twelve species of the family Irciniidae and two species of the family Spongiidae have been reported from many island and coastal areas of the East Sea, Yellow Sea and South Sea of Korea. Sponges belonging to the family Irciniidae are characterized by an anastomosing skeletal network of primary and secondary spongin fibres and fine filaments with terminal knobs. A new genus Bergquistia Sim and Lee, 2002, from Korea, is included into the family Irciniidae. The new genus is characterized by extremely simple fasciculated and uncored primary fibres. However, in the choanosomal region, primary fibres form a clearly detectable wider web. Secondary fibres form a very thin regular uncored network. The sponge surface has thick and regular conules. The colour is beige throughout the sponge, and the texture is slightly hard but compressible. Thickness of filaments is variable. To date, within the genus Sarcotragus, only very fine filaments have been described. KEY WORDS Dictyoceratida, Irciniidae, Korea. INTRODUCTION The genera Psammocinia Lendenfeld, 1889, Ircinia Nardo, 1833 and Sarcotragus Schmidt, 1862 were included in the family Thorectidae Bergquist, 1978, but BERGQUIST & WELLS (1983) noted that the genera Ircinia, Sarcotragus and Psammocinia composed a distinct sub-group within that large assemblage in having fine collagenous filaments within the sponge matrix and the presence of the furanosesterterpene variabilin. -
Demosponge Distribution in the Eastern Mediterranean: a NW–SE Gradient
Helgol Mar Res (2005) 59: 237–251 DOI 10.1007/s10152-005-0224-8 ORIGINAL ARTICLE Eleni Voultsiadou Demosponge distribution in the eastern Mediterranean: a NW–SE gradient Received: 25 October 2004 / Accepted: 26 April 2005 / Published online: 22 June 2005 Ó Springer-Verlag and AWI 2005 Abstract The purpose of this paper was to investigate total number of species was an exponential negative patterns of demosponge distribution along gradients of function of depth. environmental conditions in the biogeographical subz- ones of the eastern Mediterranean (Aegean and Levan- Keywords Demosponges Æ Distribution Æ Faunal tine Sea). The Aegean Sea was divided into six major affinities Æ Mediterranean Sea Æ Aegean Sea Æ areas on the basis of its geomorphology and bathymetry. Levantine Sea Two areas of the Levantine Sea were additionally con- sidered. All available data on demosponge species numbers and abundance in each area, as well as their Introduction vertical and general geographical distribution were ta- ken from the literature. Multivariate analysis revealed a It is generally accepted that the Mediterranean Sea is NW–SE faunal gradient, showing an apparent dissimi- one of the world’s most oligotrophic seas. Conspicu- larity among the North Aegean, the South Aegean and ously, it harbors somewhat between 4% and 18% of the the Levantine Sea, which agrees with the differences in known world marine species, while representing only the geographical, physicochemical and biological char- 0.82% in surface area and 0.32% in volume of the world acteristics of the three areas. The majority of demo- ocean (Bianchi and Morri 2000). The eastern Mediter- sponge species has been recorded in the North Aegean, ranean, and especially the Levantine basin, is considered while the South Aegean is closer, in terms of demo- as the most oligotrophic Mediterranean region, having a sponge diversity, to the oligotrophic Levantine Sea. -
The Relationship Between Microbiomes and Selective Regimes in the Sponge Genus Ircinia
fmicb-12-607289 March 5, 2021 Time: 15:52 # 1 ORIGINAL RESEARCH published: 11 March 2021 doi: 10.3389/fmicb.2021.607289 The Relationship Between Microbiomes and Selective Regimes in the Sponge Genus Ircinia Joseph B. Kelly1,2*, David E. Carlson1, Jun Siong Low3,4, Tyler Rice4 and Robert W. Thacker1,5 1 Department of Ecology and Evolution, Stony Brook University, Stony Brook, NY, United States, 2 Limnological Institute University Konstanz, Aquatic Ecology and Evolution, Konstanz, Germany, 3 Institute for Research in Biomedicine, Università della Svizzera Italiana, Bellinzona, Switzerland, 4 Department of Immunobiology, Yale University School of Medicine, New Haven, CT, United States, 5 Smithsonian Tropical Research Institute, Balboa, Panama Sponges are often densely populated by microbes that benefit their hosts through nutrition and bioactive secondary metabolites; however, sponges must simultaneously contend with the toxicity of microbes and thwart microbial overgrowth. Despite these fundamental tenets of sponge biology, the patterns of selection in the host sponges’ genomes that underlie tolerance and control of their microbiomes are still poorly understood. To elucidate these patterns of selection, we performed a Edited by: Zhiyong Li, population genetic analysis on multiple species of Ircinia from Belize, Florida, and Shanghai Jiao Tong University, China Panama using an FST -outlier approach on transcriptome-annotated RADseq loci. As Reviewed by: part of the analysis, we delimited species boundaries among seven growth forms Matthew Agler, of Ircinia. Our analyses identified balancing selection in immunity genes that have Friedrich Schiller University Jena, Germany implications for the hosts’ tolerance of high densities of microbes. Additionally, our Lucia Pita, results support the hypothesis that each of the seven growth forms constitutes a GEOMAR Helmholtz Center for Ocean Research Kiel, Germany distinct Ircinia species that is characterized by a unique microbiome. -
New Shallow Water Species of Caribbean Ircinia Nardo, 1833 (Porifera: Irciniidae)
bioRxiv preprint doi: https://doi.org/10.1101/2020.09.01.277210; this version posted September 2, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Title: New shallow water species of Caribbean Ircinia Nardo, 1833 (Porifera: Irciniidae) 2 Authors: Joseph B. Kelly1,2*, Robert W. Thacker1,3 3 4 Affiliations: 5 1Stony Brook University, Department of Ecology and Evolution, Stony Brook NY, USA. 6 2Limnological Institute University Konstanz, Aquatic Ecology and Evolution, Konstanz, 7 Germany. 8 3Smithsonian Tropical Research Institute, Box 0843-03092, Balboa, Republic of Panama. 9 *Correspondence to: [email protected]. 10 11 Abstract 12 Seven Ircinia growth forms were collected from three sites in the Caribbean (Bocas del Toro, 13 Panama; the Mesoamerican Barrier Reef, Belize; and the Florida Keys, United States of 14 America). Previous research used an integrative taxonomic framework to delimit species 15 boundaries among these growth forms. Here, we present descriptions for these species, six of 16 which are new to science (Ircinia lowi sp. nov., Ircinia bocatorensis sp. nov., Ircinia radix sp. 17 nov., Ircinia laeviconulosa sp. nov., Ircinia vansoesti sp. nov., Ircinia rutzleri sp. nov.) in 18 addition to one species conferre (Ircinia cf. reteplana Topsent, 1923). 19 20 Introduction 21 Ircinia Nardo, 1833 is a genus of sponges diagnosable from other genera in the family 22 Irciniidae Gray, 1867 by the possession of cored fascicular primary fibers and the lack of cortical 23 armoring (Hooper & van Soest, 2002). -
Unique Polyhalogenated Peptides from the Marine Sponge Ircinia Sp
Updates in Pharmacology Book Chapter Unique Polyhalogenated Peptides from the Marine Sponge Ircinia sp. Rogelio Fernández1, Asep Bayu2, Tri Aryono Hadi3, Santiago Bueno1, Marta Pérez1*, Carmen Cuevas1 and Masteria Yunovilsa Putra2 1Natural Products Department, PharmaMar S.A., Pol. Ind. La Mina Norte, Spain 2Research Center for Biotechnology, Indonesian Institute of Sciences, Indonesia 3Research Center for Oceanography, Indonesian Institute of Sciences, Indonesia *Corresponding Author: Marta Pérez, Natural Products Department, PharmaMar S.A., Pol. Ind. La Mina Norte, Avda. de los Reyes 1, 28770 Colmenar Viejo (Madrid), Spain Published March 03, 2021 This Book Chapter is a republication of an article published by Marta Pérez, et al. at Marine Drugs in July 2020. (Fernández, R.; Bayu, A.; Aryono Hadi, T.; Bueno, S.; Pérez, M.; Cuevas, C.; Yunovilsa Putra, M. Unique Polyhalogenated Peptides from the Marine Sponge Ircinia sp. Mar. Drugs 2020, 18, 396. https://doi.org/10.3390/md18080396) How to cite this book chapter: Rogelio Fernández, Asep Bayu, Tri Aryono Hadi, Santiago Bueno, Marta Pérez, Carmen Cuevas, Masteria Yunovilsa Putra. Unique Polyhalogenated Peptides from the Marine Sponge Ircinia sp. In: Nosheen Akhtar, editor. Updates in Pharmacology. Hyderabad, India: Vide Leaf. 2021. © The Author(s) 2021. This article is distributed under the terms of the Creative Commons Attribution 4.0 International License(http://creativecommons.org/licenses/by/4.0/), which 1 www.videleaf.com Updates in Pharmacology permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Author Contributions: Sample collection: T.A.H, A.B. and S. B.; Conceptualization and supervision: C.C. and M.Y.P; Methodology and writing: RF; Investigation: A.B; Original draft preparation and writing: M.P; Review and editing: C.C, M.P and M.Y.P.