The Role of Claw Colouration in Fiddler Crabs' Mate Choice
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A Systematic and Experimental Analysis of Their Genes, Genomes, Mrnas and Proteins; and Perspective to Next Generation Sequencing
Crustaceana 92 (10) 1169-1205 CRUSTACEAN VITELLOGENIN: A SYSTEMATIC AND EXPERIMENTAL ANALYSIS OF THEIR GENES, GENOMES, MRNAS AND PROTEINS; AND PERSPECTIVE TO NEXT GENERATION SEQUENCING BY STEPHANIE JIMENEZ-GUTIERREZ1), CRISTIAN E. CADENA-CABALLERO2), CARLOS BARRIOS-HERNANDEZ3), RAUL PEREZ-GONZALEZ1), FRANCISCO MARTINEZ-PEREZ2,3) and LAURA R. JIMENEZ-GUTIERREZ1,5) 1) Sea Science Faculty, Sinaloa Autonomous University, Mazatlan, Sinaloa, 82000, Mexico 2) Coelomate Genomic Laboratory, Microbiology and Genetics Group, Industrial University of Santander, Bucaramanga, 680007, Colombia 3) Advanced Computing and a Large Scale Group, Industrial University of Santander, Bucaramanga, 680007, Colombia 4) Catedra-CONACYT, National Council for Science and Technology, CDMX, 03940, Mexico ABSTRACT Crustacean vitellogenesis is a process that involves Vitellin, produced via endoproteolysis of its precursor, which is designated as Vitellogenin (Vtg). The Vtg gene, mRNA and protein regulation involve several environmental factors and physiological processes, including gonadal maturation and moult stages, among others. Once the Vtg gene, mRNAs and protein are obtained, it is possible to establish the relationship between the elements that participate in their regulation, which could either be species-specific, or tissue-specific. This work is a systematic analysis that compares the similarities and differences of Vtg genes, mRNA and Vtg between the crustacean species reported in databases with respect to that obtained from the transcriptome of Callinectes arcuatus, C. toxotes, Penaeus stylirostris and P. vannamei obtained with MiSeq sequencing technology from Illumina. Those analyses confirm that the Vtg obtained from selected species will serve to understand the process of vitellogenesis in crustaceans that is important for fisheries and aquaculture. RESUMEN La vitelogénesis de los crustáceos es un proceso que involucra la vitelina, producida a través de la endoproteólisis de su precursor llamado Vitelogenina (Vtg). -
From Ghost and Mud Shrimp
Zootaxa 4365 (3): 251–301 ISSN 1175-5326 (print edition) http://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2017 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4365.3.1 http://zoobank.org/urn:lsid:zoobank.org:pub:C5AC71E8-2F60-448E-B50D-22B61AC11E6A Parasites (Isopoda: Epicaridea and Nematoda) from ghost and mud shrimp (Decapoda: Axiidea and Gebiidea) with descriptions of a new genus and a new species of bopyrid isopod and clarification of Pseudione Kossmann, 1881 CHRISTOPHER B. BOYKO1,4, JASON D. WILLIAMS2 & JEFFREY D. SHIELDS3 1Division of Invertebrate Zoology, American Museum of Natural History, Central Park West @ 79th St., New York, New York 10024, U.S.A. E-mail: [email protected] 2Department of Biology, Hofstra University, Hempstead, New York 11549, U.S.A. E-mail: [email protected] 3Department of Aquatic Health Sciences, Virginia Institute of Marine Science, College of William & Mary, P.O. Box 1346, Gloucester Point, Virginia 23062, U.S.A. E-mail: [email protected] 4Corresponding author Table of contents Abstract . 252 Introduction . 252 Methods and materials . 253 Taxonomy . 253 Isopoda Latreille, 1817 . 253 Bopyroidea Rafinesque, 1815 . 253 Ionidae H. Milne Edwards, 1840. 253 Ione Latreille, 1818 . 253 Ione cornuta Bate, 1864 . 254 Ione thompsoni Richardson, 1904. 255 Ione thoracica (Montagu, 1808) . 256 Bopyridae Rafinesque, 1815 . 260 Pseudioninae Codreanu, 1967 . 260 Acrobelione Bourdon, 1981. 260 Acrobelione halimedae n. sp. 260 Key to females of species of Acrobelione Bourdon, 1981 . 262 Gyge Cornalia & Panceri, 1861. 262 Gyge branchialis Cornalia & Panceri, 1861 . 262 Gyge ovalis (Shiino, 1939) . 264 Ionella Bonnier, 1900 . -
Crustacea: Decapoda: Ocypodidae
Zoological Studies 44(2): 242-251 (2005) Chimney Building by Male Uca formosensis Rathbun, 1921 (Crustacea: Decapoda: Ocypodidae) after Pairing: A New Hypothesis for Chimney Function Hsi-Te Shih1,2,*, Hin-Kiu Mok2, and Hsueh-Wen Chang3 1Department of Life Science, National Chung-Hsing University, Taichung, Taiwan 402, R.O.C. Tel/Fax: 886-4-22856496. E-mail: [email protected] 2Institute of Marine Biology, National Sun Yat-sen University, Kaohsiung, Taiwan 804, R.O.C. 3Department of Biological Sciences, National Sun Yat-sen University, Kaohsiung, Taiwan 804, R.O.C. (Accepted February 8, 2005) Hsi-Te Shih, Hin-Kiu Mok, and Hsueh-Wen Chang (2005) Chimney building by male Uca formosensis Rathbun, 1921 (Crustacea: Decapoda: Ocypodidae) after pairing: a new hypothesis for chimney function. Zoological Studies 44(2): 242-251. The construction of a chimney after pairing is first described for Uca for- mosensis Rathbun, 1921, a fiddler crab endemic to Taiwan. After attracting a female into his burrow, the male builds a chimney averaging 9.2 cm high and 7.7 cm in diameter at the base within a 4- or 5-d period before the next neap tide. It is not related to sexual attraction because the chimney does not appear prior to or during courtship. To build the chimney, the male excavates the burrow which probably widens the shaft and, more importantly, deepens the burrow so that it reaches the water table, thus providing a moist chamber in which the female can incubate her eggs. The mudballs dug out from within the burrow are piled around the entrance and form the chimney, which herein is assumed to function as a way for the builder to hide from its enemies. -
Decapoda, Brachyura
APLICACIÓN DE TÉCNICAS MORFOLÓGICAS Y MOLECULARES EN LA IDENTIFICACIÓN DE LA MEGALOPA de Decápodos Braquiuros de la Península Ibérica bérica I enínsula P raquiuros de la raquiuros B ecápodos D de APLICACIÓN DE TÉCNICAS MORFOLÓGICAS Y MOLECULARES EN LA IDENTIFICACIÓN DE LA MEGALOPA LA DE IDENTIFICACIÓN EN LA Y MOLECULARES MORFOLÓGICAS TÉCNICAS DE APLICACIÓN Herrero - MEGALOPA “big eyes” Leach 1793 Elena Marco Elena Marco-Herrero Programa de Doctorado en Biodiversidad y Biología Evolutiva Rd. 99/2011 Tesis Doctoral, Valencia 2015 Programa de Doctorado en Biodiversidad y Biología Evolutiva Rd. 99/2011 APLICACIÓN DE TÉCNICAS MORFOLÓGICAS Y MOLECULARES EN LA IDENTIFICACIÓN DE LA MEGALOPA DE DECÁPODOS BRAQUIUROS DE LA PENÍNSULA IBÉRICA TESIS DOCTORAL Elena Marco-Herrero Valencia, septiembre 2015 Directores José Antonio Cuesta Mariscal / Ferran Palero Pastor Tutor Álvaro Peña Cantero Als naninets AGRADECIMIENTOS-AGRAÏMENTS Colaboración y ayuda prestada por diferentes instituciones: - Ministerio de Ciencia e Innovación (actual Ministerio de Economía y Competitividad) por la concesión de una Beca de Formación de Personal Investigador FPI (BES-2010- 033297) en el marco del proyecto: Aplicación de técnicas morfológicas y moleculares en la identificación de estados larvarios planctónicos de decápodos braquiuros ibéricos (CGL2009-11225) - Departamento de Ecología y Gestión Costera del Instituto de Ciencias Marinas de Andalucía (ICMAN-CSIC) - Club Náutico del Puerto de Santa María - Centro Andaluz de Ciencias y Tecnologías Marinas (CACYTMAR) - Instituto Español de Oceanografía (IEO), Centros de Mallorca y Cádiz - Institut de Ciències del Mar (ICM-CSIC) de Barcelona - Institut de Recerca i Tecnología Agroalimentàries (IRTA) de Tarragona - Centre d’Estudis Avançats de Blanes (CEAB) de Girona - Universidad de Málaga - Natural History Museum of London - Stazione Zoologica Anton Dohrn di Napoli (SZN) - Universitat de Barcelona AGRAÏSC – AGRADEZCO En primer lugar quisiera agradecer a mis directores, el Dr. -
The Effect of Salinity on Larval Development of Uca Tangeri (Eydoux, 1835) (Brachyura: Ocypodidae) and New Findings of the Zoea
SciENTiA M arina73(2) June 2009, 297-305, Barcelona (Spain) ISSN: 0214-8358 doi: 10.3989/scimar.2009.73n2297 The effect of salinity on larval developmentUca of tangeri (Eydoux, 1835) (Brachyura: Ocypodidae) and new findings of the zoeal morphology EDUARDO D. SPIVAK1 and JOSÉ A. CUESTA2 1 Departamento de Biología, Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Mar del Plata and Consejo Nacional de Investigaciones Científicas y Técnicas de la República Argentina, Casilla de Correo 1245, 7600 Mar del Plata, Argentina. E-mail: [email protected] 2Instituto de Ciencias Marinas de Andalucía (CSIC), Avenida República Saharaui, 2, E-11510 Puerto Real, Cádiz, Spain. SUMMARY : In order to evaluate their tolerance to low salinities, zoeae of the fiddler crab Uca tangeri from the Rio San Pedro population (southwestern Spain) were reared in the laboratory at 20°C and at three salinities (16, 24 and 32). The zoeal development was completed at 24 and 32 but the crabs died as zoea I or zoea II, and very rarely as zoea III, at 16; tolerance to low salinities varied among clutches produced by different females. The duration of the first zoeal stage and of the complete zoeal development was shorter at 32. Our observations showed that the zoeae of U. tangeri could not tolerate retention in the mesohaline water of estuaries, and that export to oceanic waters would be optimal for their successful development. Survival at 24 suggests that larvae could also develop in polyhahne conditions if they were retained in the ocean-estuary interface. The presence of an additional zoeal stage (zoea VI) was observed in some individuals and associated with unfavourable combina tions of temperature and salinity. -
Download at Including Basic Examples on How to Use It
bioRxiv preprint doi: https://doi.org/10.1101/2020.12.11.422154; this version posted January 28, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Title: Measuring Compound Eye Optics with Microscope and MicroCT Images Article Type: Methods Author Names and Affiliations: John Paul Currea1, Yash Sondhi2, Akito Y. Kawahara3, and Jamie Theobald2 1Department of Psychology, Florida International University, Miami, FL 33199, U.S.A. 2Department of Biological Sciences, Florida International University, Miami, FL 33199, U.S.A. 3Florida Museum of Natural History, University of Florida, Gainesville, FL, 32611, U.S.A. Abstract (<200 words): The arthropod compound eye is the most prevalent eye type in the animal kingdom, with an impressive range of shapes and sizes. Studying its natural range of morphologies provides insight into visual ecology, development, and evolution. In contrast to the camera-type eyes we possess, external structures of compound eyes often reveal resolution, sensitivity, and field of view if the eye is spherical. Non-spherical eyes, however, require measuring internal structures using imaging technology like MicroCT (µCT). µCT is a burgeoning 3D X-Ray imaging technique that has been used to image arthropod muscles, brains, ocelli, and eyes. Thus far, there is no efficient tool to automate characterizing compound eye optics in either 2D or 3D data. We present two open-source programs: (1) the ommatidia detecting algorithm (ODA), which automatically measures ommatidia count and diameter in 2D images, and (2) a µCT pipeline (ODA-3D), which calculates anatomical acuity, sensitivity, and field of view across the eye by applying the ODA to 3D data. -
Temporal Distribution in the Abundance of the Fiddler Crab Uca (Leptuca) Uruguayensis Nobili, 1901 (Decapoda: Ocypodidae) from G
Nauplius 21(2): 151-159, 2013 151 Temporal distribution in the abundance of the fiddler crab Uca (Leptuca) uruguayensis Nobili, 1901 (Decapoda: Ocypodidae) from Garças River mangrove, Guaratuba Bay, southern Brazil Salise Brandt Martins and Setuko Masunari (SBM, SM) Department of Zoology, Institute of Biological Sciences, Federal University of Paraná. Centro Politécnico, Jardim das Américas, Caixa Postal 19020, 81531-980, Curitiba, Paraná, Brazil. E-mails: (SBM) [email protected]; (SM) [email protected] ABSTRACT - A study on the temporal distribution, sex ratio, reproductive period, recruitment of juveniles and size composition of individuals of the fiddler crab Uca (Leptuca) uruguayensis was carried out in a population living in the Garças River mangrove, Guaratuba Bay, Paraná State, Brazil. Eight square samples of 0.25 m² (0.50 m side) were obtained on a monthly basis, from April/2011 to March/2012. The crabs were collected through the excavation of burrows and their carapace width (CW) was measured. Air and water temperatures varied from 19.0 to 29.5°C and 17.0 to 27.0°C, respectively, the salinity from 7 to 23 and the soil temperature from 19.0 to 29.2°C. A total of 1,099 fiddler crabs were collected, being 529 males, 520 females (of these, 9 ovigerous) and 50 sexually undifferentiated individuals. The average density of the population ranged from 12 (June/11) to 71 ind.m-² (May/11), but its annual fluctuation was not correlated to abiotic variables. The sex ratio was 1:1 all year round and in all CW classes. Although in low abundance, ovigerous females were recorded in six months and juvenile crabs were present all year round, indicating a continuous reproduction and recruitment of the species. -
Interactive Segmentation of Crystalline Cones in Compound Eyes
bioRxiv preprint doi: https://doi.org/10.1101/2020.12.15.422850; this version posted December 16, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 InSegtCone: Interactive Segmentation of crystalline Cones in compound 2 eyes 3 4 Abstract 5 6 Understanding the diversity of eyes is crucial to unravel how different animals use vision to 7 interact with their respective environments. To date, comparative studies of eye anatomy are 8 scarce because they often involve time-consuming or inefficient methods. X-ray micro- 9 tomography is a promising high-throughput imaging technique that enables to reconstruct the 10 3D anatomy of eyes, but powerful tools are needed to perform fast conversions of anatomical 11 reconstructions into functional eye models. We developed a computing method named 12 InSegtCone to automatically segment the crystalline cones in the apposition compound eyes of 13 arthropods. Here, we describe the full auto-segmentation process, showcase its application to 14 three different insect compound eyes and evaluate its performance. The auto-segmentation 15 could successfully label the full individual shapes of 60%-80% of the crystalline cones, and is 16 about as accurate and 250 times faster than manual labelling of the individual cones. We 17 believe that InSegtCone can be an important tool for peer scientists to enable extensive 18 comparisons of the diversity of eyes and vision in arthropods. 19 20 Authors and affiliations 21 22 Pierre Tichit1*, Tunhe Zhou2*, Hans Martin Kjer3, Vedrana Andersen Dahl3, Anders Bjorholm 23 Dahl3, and Emily Baird1,4 24 25 ˚Corresponding author at Lund University. -
Quaternary Intertidal and Supratidal Crabs \(Decapoda, Brachyura\)
Journal of Systematic Palaeontology ISSN: 1477-2019 (Print) 1478-0941 (Online) Journal homepage: http://www.tandfonline.com/loi/tjsp20 Quaternary intertidal and supratidal crabs (Decapoda, Brachyura) from tropical America and the systematic affinities of fossil fiddler crabs Javier Luque, John H. Christy, Austin J. W. Hendy, Michael S. Rosenberg, Roger W. Portell, Kecia A. Kerr & A. Richard Palmer To cite this article: Javier Luque, John H. Christy, Austin J. W. Hendy, Michael S. Rosenberg, Roger W. Portell, Kecia A. Kerr & A. Richard Palmer (2018) Quaternary intertidal and supratidal crabs (Decapoda, Brachyura) from tropical America and the systematic affinities of fossil fiddler crabs, Journal of Systematic Palaeontology, 16:12, 1037-1055, DOI: 10.1080/14772019.2017.1362599 To link to this article: https://doi.org/10.1080/14772019.2017.1362599 View supplementary material Published online: 25 Aug 2017. Submit your article to this journal Article views: 107 View related articles View Crossmark data Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=tjsp20 Journal of Systematic Palaeontology, 2018 Vol. 16, No. 12, 1037–1055, https://doi.org/10.1080/14772019.2017.1362599 Quaternary intertidal and supratidal crabs (Decapoda, Brachyura) from tropical America and the systematic affinities of fossil fiddler crabs Javier Luque a,b*, John H. Christy b, Austin J. W. Hendyb,c,d, Michael S. Rosenberg e, Roger W. Portelld, Kecia A. Kerr a,b and A. Richard Palmer a aDepartment of -
Intraspecific Variation in Carapace Morphology Among Fiddler Crabs (Genus Uca) from the Atlantic Coast of Brazil
University of Northern Iowa UNI ScholarWorks Faculty Publications Faculty Work 1-13-2014 Intraspecific ariationV in Carapace Morphology Among Fiddler Crabs (Genus Uca) From the Atlantic Coast of Brazil Kelsey R. Hampton University of Northern Iowa MelanieLet us knowJ. Hopkins how access to this document benefits ouy CopSee nextyright page ©2014 for additional Kelsey R. authors Hampt on, Melanie J. Hopkins, John C. McNamara, and Carl L. Thurman. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. This work is licensed under a Creative Commons Attribution 4.0 License. Follow this and additional works at: https://scholarworks.uni.edu/bio_facpub Part of the Biology Commons Recommended Citation RIGHTS CHECKING: 4/6/2016 -- Sherpa/Romeo green journal, doja as an open access journal, author can archive publisher's version/pdf, on author's personal website, institutional website and institutional repository, Gold' Open Access = article published by publisher with free availability to all users; available from IR as Open Access (or formerly Free Access). Publisher's PDF may be posted on the Author's personal or institutional website or deposited into the Author's institutional Open Access repository any time after publication only if the article is published with 'Gold' Open Access. In all cases, the article on a website or in the repository must have a link to its abstract page on the Inter-Research website, and cite the article doi. This Article is brought to you for free and open access by the Faculty Work at UNI ScholarWorks. -
TS3 Spectral Sensitivity.Pdf (295.2Kb)
University of Plymouth PEARL https://pearl.plymouth.ac.uk Faculty of Science and Engineering School of Biological and Marine Sciences 2021-06-04 Marine artificial light at night: An empirical and technical guide Davies, T http://hdl.handle.net/10026.1/17085 10.1111/2041-210X.13653 Methods in Ecology and Evolution Wiley All content in PEARL is protected by copyright law. Author manuscripts are made available in accordance with publisher policies. Please cite only the published version using the details provided on the item record or document. In the absence of an open licence (e.g. Creative Commons), permissions for further reuse of content should be sought from the publisher or author. Table S3 Quantified spectral sensitivity of marine organisms. Given are phylum, scientific and common species names (currently accepted based on WoRMS database, in brackets are names as cited in reference), life stage, peak spectral sensitivity (as λ-max in nm) and method of quantification. The list is non-exhaustive. Dedicated reviews exists for instance for coral reef teleost (Cortesi et al., 2020), deep-sea teleost (de Busserolles et al., 2020), lampreys (Fain, 2020) and sharks and rays (Hart, 2020). Schweikert et al. (2018) consolidated a list of variation in rod spectral sensitivity of > 400 Actinopterygii with habitat and depth. Phylum Species (Taxon) Common name Life stage Spectral sensitivity Method Reference (as λ-max in nm) Annelida Platynereis dumerilii - Larvae 410, 490 Behavioural test Jékely et al., 2008 Arthropoda Afruca tangeri (Uca West -
Territorial Defence in a Network: Audiences Only Matter to Male Fiddler Crabs Primed For
ORE Open Research Exeter TITLE Territorial defense in a network: Audiences only matter to male fiddler crabs primed for confrontation AUTHORS Darden, SK; May, MK; Boyland, NK; et al. JOURNAL Behavioral Ecology DEPOSITED IN ORE 19 June 2019 This version available at http://hdl.handle.net/10871/37589 COPYRIGHT AND REUSE Open Research Exeter makes this work available in accordance with publisher policies. A NOTE ON VERSIONS The version presented here may differ from the published version. If citing, you are advised to consult the published version for pagination, volume/issue and date of publication 1 Territorial defence in a network: audiences only matter to male fiddler crabs primed for 2 confrontation 3 4 Lay Summary: Being part of a social network means that responses to social confrontations 5 are likely to be more complex than they might seem. Indeed, here we find effects of a wider 6 network of conspecifics on an individual’s behaviour in male European fiddler crabs. Males 7 became more aggressive toward intruders if their neighbour was watching when they had 8 previously observed an aggressive interaction between their neighbour and a male territory 9 intruder. 10 11 Abstract 12 13 Territorial contests often occur in the presence of conspecifics not directly involved in the 14 interaction. Actors may alter their behaviour in the presence of this audience, an ‘audience 15 effect’, and audiences themselves may alter their behaviour as a result of observing an 16 interaction, a ‘bystander effect’. Previous work has documented these effects by looking at 17 each in isolation, but to our knowledge, none has investigated their interaction; something 18 that is more likely to represent a realistic scenario for species where individuals aggregate 19 spatially.