Ultrastructure of Spermatozoa in Four Species of Alvinellidae (Annelida: Polychaeta)
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Biodiversity and Trophic Ecology of Hydrothermal Vent Fauna Associated with Tubeworm Assemblages on the Juan De Fuca Ridge
Biogeosciences, 15, 2629–2647, 2018 https://doi.org/10.5194/bg-15-2629-2018 © Author(s) 2018. This work is distributed under the Creative Commons Attribution 4.0 License. Biodiversity and trophic ecology of hydrothermal vent fauna associated with tubeworm assemblages on the Juan de Fuca Ridge Yann Lelièvre1,2, Jozée Sarrazin1, Julien Marticorena1, Gauthier Schaal3, Thomas Day1, Pierre Legendre2, Stéphane Hourdez4,5, and Marjolaine Matabos1 1Ifremer, Centre de Bretagne, REM/EEP, Laboratoire Environnement Profond, 29280 Plouzané, France 2Département de sciences biologiques, Université de Montréal, C.P. 6128, succursale Centre-ville, Montréal, Québec, H3C 3J7, Canada 3Laboratoire des Sciences de l’Environnement Marin (LEMAR), UMR 6539 9 CNRS/UBO/IRD/Ifremer, BP 70, 29280, Plouzané, France 4Sorbonne Université, UMR7144, Station Biologique de Roscoff, 29680 Roscoff, France 5CNRS, UMR7144, Station Biologique de Roscoff, 29680 Roscoff, France Correspondence: Yann Lelièvre ([email protected]) Received: 3 October 2017 – Discussion started: 12 October 2017 Revised: 29 March 2018 – Accepted: 7 April 2018 – Published: 4 May 2018 Abstract. Hydrothermal vent sites along the Juan de Fuca community structuring. Vent food webs did not appear to be Ridge in the north-east Pacific host dense populations of organised through predator–prey relationships. For example, Ridgeia piscesae tubeworms that promote habitat hetero- although trophic structure complexity increased with ecolog- geneity and local diversity. A detailed description of the ical successional stages, showing a higher number of preda- biodiversity and community structure is needed to help un- tors in the last stages, the food web structure itself did not derstand the ecological processes that underlie the distribu- change across assemblages. -
A Bioturbation Classification of European Marine Infaunal
A bioturbation classification of European marine infaunal invertebrates Ana M. Queiros 1, Silvana N. R. Birchenough2, Julie Bremner2, Jasmin A. Godbold3, Ruth E. Parker2, Alicia Romero-Ramirez4, Henning Reiss5,6, Martin Solan3, Paul J. Somerfield1, Carl Van Colen7, Gert Van Hoey8 & Stephen Widdicombe1 1Plymouth Marine Laboratory, Prospect Place, The Hoe, Plymouth, PL1 3DH, U.K. 2The Centre for Environment, Fisheries and Aquaculture Science, Pakefield Road, Lowestoft, NR33 OHT, U.K. 3Department of Ocean and Earth Science, National Oceanography Centre, University of Southampton, Waterfront Campus, European Way, Southampton SO14 3ZH, U.K. 4EPOC – UMR5805, Universite Bordeaux 1- CNRS, Station Marine d’Arcachon, 2 Rue du Professeur Jolyet, Arcachon 33120, France 5Faculty of Biosciences and Aquaculture, University of Nordland, Postboks 1490, Bodø 8049, Norway 6Department for Marine Research, Senckenberg Gesellschaft fu¨ r Naturforschung, Su¨ dstrand 40, Wilhelmshaven 26382, Germany 7Marine Biology Research Group, Ghent University, Krijgslaan 281/S8, Ghent 9000, Belgium 8Bio-Environmental Research Group, Institute for Agriculture and Fisheries Research (ILVO-Fisheries), Ankerstraat 1, Ostend 8400, Belgium Keywords Abstract Biodiversity, biogeochemical, ecosystem function, functional group, good Bioturbation, the biogenic modification of sediments through particle rework- environmental status, Marine Strategy ing and burrow ventilation, is a key mediator of many important geochemical Framework Directive, process, trait. processes in marine systems. In situ quantification of bioturbation can be achieved in a myriad of ways, requiring expert knowledge, technology, and Correspondence resources not always available, and not feasible in some settings. Where dedi- Ana M. Queiros, Plymouth Marine cated research programmes do not exist, a practical alternative is the adoption Laboratory, Prospect Place, The Hoe, Plymouth PL1 3DH, U.K. -
Thelepus Crispus Class: Polychaeta, Sedentaria, Canalipalpata
Phylum: Annelida Thelepus crispus Class: Polychaeta, Sedentaria, Canalipalpata Order: Terebellida, Terebellomorpha A terebellid worm Family: Terebellidae, Theleponinae Description (Hartman 1969). Notosetae present from Size: Individuals range in size from 70–280 second branchial segment (third body mm in length (Hartman 1969). The greatest segment) and continue almost to the worm body width at segments 10–16 is 13 mm (88 posterior (to 14th segment from end in mature –147 segments). The dissected individual specimens) (Hutchings and Glasby 1986). All on which this description is based was 120 neurosetae short handled, avicular (bird-like) mm in length (from Coos Bay, Fig. 1). uncini, imbedded in a single row on oval- Color: Pinkish orange and cream with bright shaped tori (Figs. 3, 5) where the single row red branchiae, dark pink prostomium and curves into a hook, then a ring in latter gray tentacles and peristomium. segments (Fig. 3). Each uncinus bears a General Morphology: Worm rather stout thick, short fang surmounted by 4–5 small and cigar-shaped. teeth (Hartman 1969) (two in this specimen) Body: Two distinct body regions consisting (Fig. 4). Uncini begin on the fifth body of a broad thorax with neuro- and notopodia segment (third setiger), however, Johnson and a tapering abdomen with only neuropo- (1901) and Hartman (1969) have uncini dia. beginning on setiger two. Anterior: Prostomium reduced, with Eyes/Eyespots: None. ample dorsal flap transversely corrugated Anterior Appendages: Feeding tentacles are dorsally (Fig. 5). Peristomium with circlet of long (Fig. 1), filamentous, white and mucus strongly grooved, unbranched tentacles (Fig. covered. 5), which cannot be retracted fully (as in Am- Branchiae: Branchiae present (subfamily pharctidae). -
In Worms Geoff Read NIWA New Zealand
Brussels, 28-30 September Polychaeta (Annelida) in WoRMS Geoff Read NIWA New Zealand www.marinespecies.org/polychaeta/index.php Context interface Swimming — an unexpected skill of Polychaeta Acrocirridae Alciopidae Syllidae Nereididae Teuthidodr ilus = squidworm Acrocirridae Polynoidae Swima bombiviridis Syllidae Total WoRMS Polychaeta records, excluding fossils 91 valid families. Entries >98% editor checked, except Echiura (69%) Group in WoRMS all taxa all species valid species names names names Class Polychaeta 23,872 20,135 11,615 Subclass Echiura 296 234 197 Echiura were recently a Subclass Errantia 12,686 10,849 6,210 separate phylum Subclass Polychaeta incertae sedis 354 265 199 Subclass Sedentaria 10,528 8,787 5,009 Non-marine Polychaeta 28 16 (3 terrestrial) Class Clitellata* 1601 1086 (279 Hirudinea) *Total valid non-leech clitellates~5000 spp, 1700 aquatic. (Martin et al. 2008) Annelida diversity "It is now clear that annelids, in addition to including a large number of species, encompass a much greater disparity of body plans than previously anticipated, including animals that are segmented and unsegmented, with and without parapodia, with and without chaetae, coelomate and acoelomate, with straight guts and with U-shaped digestive tracts, from microscopic to gigantic." (Andrade et al. 2015) Andrade et al (2015) “Articulating “archiannelids”: Phylogenomics and annelid relationships, with emphasis on meiofaunal taxa.” Molecular Biology and Evolution, efirst Myzostomida (images Summers et al)EV Nautilus: Riftia Semenov: Terebellidae Annelida latest phylogeny “… it is now well accepted that Annelida includes many taxa formerly considered different phyla or with supposed affiliations with other animal groups, such as Sipuncula, Echiura, Pogonophora and Vestimentifera, Myzostomida, or Diurodrilida (Struck et al. -
Spatial Variation in the Reproductive Biology of Paralvinella Palmiformis (Polychaeta: Alvinellidae) from a Vent Field on the Juan De Fuca Ridge
MARINE ECOLOGY PROGRESS SERIES Vol. 255: 171–181, 2003 Published June 24 Mar Ecol Prog Ser Spatial variation in the reproductive biology of Paralvinella palmiformis (Polychaeta: Alvinellidae) from a vent field on the Juan de Fuca Ridge Jonathan T. P. Copley1,*, Paul A. Tyler 1, Cindy L. Van Dover 2, Steven J. Philp1 1School of Ocean and Earth Science, Southampton Oceanography Centre, University of Southampton, European Way, Southampton SO14 3ZH, United Kingdom 2Biology Department, College of William & Mary, Williamsburg, Virginia 23187, USA ABSTRACT: The microdistribution and dynamics of deep-sea hydrothermal vent communities often reflect the extreme heterogeneity of their environment. Here we present an assessment of spatial variation in the reproductive development of the alvinellid polychaete Paralvinella palmiformis at the High Rise vent field (Endeavour Segment, Juan de Fuca Ridge, NE Pacific). Samples collected from different locations across the vent field suggest patchy reproductive development for this species. Males and females from several locations contained few or no developing gametes, while gametes were abundant in samples collected at the same time from other locations. Samples lacking gametes were distinguished by body size-frequency distributions with peaks at smaller sizes and the presence or absence of other fauna consistent with early stage assemblages in a successional mosaic model previously proposed for Endeavour Segment communities. Where gametes were present, synchrony of reproductive development between females within samples and between samples was evident. Reproductive synchrony between pairs of samples initially declined over a 7 d interval between sam- ples, suggesting a rapid rate of reproductive development for P. palmiformis. Samples collected 1 mo apart, however, displayed similar frequency distributions of developing gametes. -
Identification Guide to the Planktonic Polychaete Larvae Around the Island of Helgoland (German Bight)
HELGOL.~NDER MEERESUNTERSUCHUNGEN Helgol/inder Meeresunters. 48, 1-58 (1994) Identification guide to the planktonic polychaete larvae around the island of Helgoland (German Bight) S. Plate* & E. Husemann* * Biologische Anstalt Helgoland (Meeresstation); D-27483 Helgoland, Federal Republic of Germany ABSTRACT: The purpose of this work is to provide the means of identifying the planktonic larvae of the polychaete species appearing in the plankton around the island of Helgoland (North Sea). During a three-year survey in this area, the larvae of 54 species out of 24 families belonging to the orders Orbiniida, Spionida, Capitelhda, Phyllodocida, Oweniida, Terebelhda, Sabelhda and the former Archiannelida have been recorded. Illustrated keys to the families, genera and species are presented. To facilitate the identification, additional descriptions and information about the seasonal appearance of the species are given. INTRODUCTION More than 13 000 species of polychaetous annelids take part in the marine benthos communities worldwide. Their distribution, species composition and population density are monitored within various benthos surveys. For the North Sea, especially the German Bight and the Wadden Sea, much information about the benthic polychaete fauna is available (Caspers, 1950; Stripp, 1969; DSrjes, 1977; Rachor & Gerlach, 1978; Gillandt, 1979; Salzwedel et al., 1985; Rachor, 1990; Bosselmann, 1991; Kr6ncke, 1991). In contrast, the holoplanktonic polychaete species and the meroplanktonic polychaete larvae, which are only part of the plankton during a more or less expanded phase of their ontogenesis, have never received much attention. Meroplanktonic polychaete larvae are seldomly recorded during studies monitoring the North Sea plankton (Smidt, 1951; Giere, 1968; Fransz, 1981; Bosselmann, 1989; Belgrano et al., 1990). -
An Annotated Checklist of the Marine Macroinvertebrates of Alaska David T
NOAA Professional Paper NMFS 19 An annotated checklist of the marine macroinvertebrates of Alaska David T. Drumm • Katherine P. Maslenikov Robert Van Syoc • James W. Orr • Robert R. Lauth Duane E. Stevenson • Theodore W. Pietsch November 2016 U.S. Department of Commerce NOAA Professional Penny Pritzker Secretary of Commerce National Oceanic Papers NMFS and Atmospheric Administration Kathryn D. Sullivan Scientific Editor* Administrator Richard Langton National Marine National Marine Fisheries Service Fisheries Service Northeast Fisheries Science Center Maine Field Station Eileen Sobeck 17 Godfrey Drive, Suite 1 Assistant Administrator Orono, Maine 04473 for Fisheries Associate Editor Kathryn Dennis National Marine Fisheries Service Office of Science and Technology Economics and Social Analysis Division 1845 Wasp Blvd., Bldg. 178 Honolulu, Hawaii 96818 Managing Editor Shelley Arenas National Marine Fisheries Service Scientific Publications Office 7600 Sand Point Way NE Seattle, Washington 98115 Editorial Committee Ann C. Matarese National Marine Fisheries Service James W. Orr National Marine Fisheries Service The NOAA Professional Paper NMFS (ISSN 1931-4590) series is pub- lished by the Scientific Publications Of- *Bruce Mundy (PIFSC) was Scientific Editor during the fice, National Marine Fisheries Service, scientific editing and preparation of this report. NOAA, 7600 Sand Point Way NE, Seattle, WA 98115. The Secretary of Commerce has The NOAA Professional Paper NMFS series carries peer-reviewed, lengthy original determined that the publication of research reports, taxonomic keys, species synopses, flora and fauna studies, and data- this series is necessary in the transac- intensive reports on investigations in fishery science, engineering, and economics. tion of the public business required by law of this Department. -
Alvinella Pompejana) Accepted: 18-04-2020
International Journal of Fauna and Biological Studies 2020; 7(3): 25-32 ISSN 2347-2677 www.faunajournal.com IJFBS 2020; 7(3): 25-32 Adaptation in extreme underwater vent ecosystem: A Received: 16-03-2020 case study on Pompeii worm (Alvinella pompejana) Accepted: 18-04-2020 Joyanta Bir (1). Khulna University, School of Joyanta Bir, Md Rony Golder and SM Ibrahim Khalil Life Science, Fisheries and Marine Resources Technology Abstract Discipline, 9208, Khulna, Bangladesh The deep-sea habitats such as cold seeps and hydrothermal vents are very challenging environments (2). University of Basque displaying a high biomass compared to the adjacent environment at comparable depth. Because of the Country, Marine Environment high pressure, the high temperature, massive concentrations of toxic compounds and the extreme and Resources (MER), Bilbao, physico-chemical gradients makes the lives very extreme in vent environment. Hypoxia is one of the Spain challenges that these species face to live there. Therefore, most of the dwellers here lives in a highly integrated symbiosis with sulfide-oxidizing chemoautotrophic bacteria. Very few species belonging to Md Rony Golder annelids and crustaceans can survive in this ecosystem through developing specific adaptations of their Khulna University, School of respiratory system, the morphological, physiological and biochemical levels. Here, we review specific Life Science, Fisheries and adaptations mechanisms of a prominent vent dweller Pompeii Worm (Alvinella pompejana) in order to Marine Resources Technology know their morphological, physiological biochemical levels to cope with thrilling hypoxic vent Discipline, 9208, Khulna, environment. Most often Pompeii worm develop ventilation and branchial surfaces to assistance with Bangladesh oxygen extraction, and an increase in excellently tuned oxygen obligatory proteins to help with oxygen stowage and conveyance. -
DNA Metabarcoding for High-Throughput Monitoring
www.nature.com/scientificreports OPEN DNA metabarcoding for high- throughput monitoring of estuarine macrobenthic communities Received: 12 June 2017 Jorge Lobo 1,2, Shadi Shokralla3, Maria Helena Costa2, Mehrdad Hajibabaei3 & Accepted: 16 October 2017 Filipe Oliveira Costa1 Published: xx xx xxxx Morphology-based profling of benthic communities has been extensively applied to aquatic ecosystems’ health assessment. However, it remains a low-throughput, and sometimes ambiguous, procedure. Despite DNA metabarcoding has been applied to marine benthos, a comprehensive approach providing species-level identifcations for estuarine macrobenthos is still lacking. Here we report a combination of experimental and feld studies to assess the aptitude of COI metabarcoding to provide robust species-level identifcations for high-throughput monitoring of estuarine macrobenthos. To investigate the ability of metabarcoding to detect all species present in bulk DNA extracts, we contrived three phylogenetically diverse communities, and applied four diferent primer pairs to generate PCR products within the COI barcode region. Between 78–83% of the species in the contrived communities were recovered through HTS. Subsequently, we compared morphology and metabarcoding-based approaches to determine the species composition from four distinct estuarine sites. Our results indicate that species richness would be considerably underestimated if only morphological methods were used: globally 27 species identifed through morphology versus 61 detected by metabarcoding. Although further refnement is required to improve efciency and output of this approach, here we show the great aptitude of COI metabarcoding to provide high quality and auditable species identifcations in estuarine macrobenthos monitoring. Macrobenthic invertebrate surveys have been widely used for the assessment of the ecological status of aquatic ecosystems worldwide1–5. -
Systematics, Evolution and Phylogeny of Annelida – a Morphological Perspective
Memoirs of Museum Victoria 71: 247–269 (2014) Published December 2014 ISSN 1447-2546 (Print) 1447-2554 (On-line) http://museumvictoria.com.au/about/books-and-journals/journals/memoirs-of-museum-victoria/ Systematics, evolution and phylogeny of Annelida – a morphological perspective GÜNTER PURSCHKE1,*, CHRISTOPH BLEIDORN2 AND TORSTEN STRUCK3 1 Zoology and Developmental Biology, Department of Biology and Chemistry, University of Osnabrück, Barbarastr. 11, 49069 Osnabrück, Germany ([email protected]) 2 Molecular Evolution and Animal Systematics, University of Leipzig, Talstr. 33, 04103 Leipzig, Germany (bleidorn@ rz.uni-leipzig.de) 3 Zoological Research Museum Alexander König, Adenauerallee 160, 53113 Bonn, Germany (torsten.struck.zfmk@uni- bonn.de) * To whom correspondence and reprint requests should be addressed. Email: [email protected] Abstract Purschke, G., Bleidorn, C. and Struck, T. 2014. Systematics, evolution and phylogeny of Annelida – a morphological perspective . Memoirs of Museum Victoria 71: 247–269. Annelida, traditionally divided into Polychaeta and Clitellata, is an evolutionary ancient and ecologically important group today usually considered to be monophyletic. However, there is a long debate regarding the in-group relationships as well as the direction of evolutionary changes within the group. This debate is correlated to the extraordinary evolutionary diversity of this group. Although annelids may generally be characterised as organisms with multiple repetitions of identically organised segments and usually bearing certain other characters such as a collagenous cuticle, chitinous chaetae or nuchal organs, none of these are present in every subgroup. This is even true for the annelid key character, segmentation. The first morphology-based cladistic analyses of polychaetes showed Polychaeta and Clitellata as sister groups. -
DNA Metabarcoding for High-Throughput Monitoring of Estuarine Macrobenthic Communities
bioRxiv preprint doi: https://doi.org/10.1101/117168; this version posted June 1, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 DNA metabarcoding for high-throughput monitoring of estuarine macrobenthic communities 2 3 Jorge Lobo1,2,*, Shadi Shokralla3, Maria Helena Costa2, Mehrdad Hajibabaei3, Filipe Oliveira Costa1 4 5 1CBMA – Centre of Molecular and Environmental Biology, University of Minho, Campus de Gualtar, 6 4710-057 Braga, Portugal 7 2MARE – Marine and Environmental Sciences Centre. New University of Lisbon. Campus de 8 Caparica, 2829-516 Caparica, Portugal 9 3Centre for Biodiversity Genomics, Biodiversity Institute of Ontario and Department of Integrative 10 Biology. University of Guelph. Guelph, ON N1G 2W1, Canada 11 * Corresponding author 12 Email: [email protected] 13 14 Abstract 15 16 Benthic communities are key components of aquatic ecosystems’ biomonitoring. However, 17 morphology-based species identifications remain a low-throughput, and sometimes ambiguous, 18 approach. Despite metabarcoding methodologies have been applied for above-species taxa inventories 19 in marine meiofaunal communities, a comprehensive approach providing species-level identifications 20 for estuarine macrobenthic communities is still lacking. Here we report a combination of experimental 21 and field studies demonstrating the aptitude of COI metabarcoding to provide robust species-level 22 identifications within a framework of high-throughput monitoring of estuarine macrobenthic 23 communities. To investigate the ability to recover DNA barcodes from all species present in a bulk 24 DNA extract, we assembled 3 phylogenetically diverse communities, using 4 different primer pairs to 25 generate PCR products of the COI barcode region. -
Data Sources the Next 64 Pages Comprise a Reference List
SUPPORTING INFORMATION APPENDIX 1: Data Sources The next 64 pages comprise a reference list for all literary sources given as references for trait scores and/or comments in the sFDvent raw (marked with an asterisk (*) if not then included in recommended) and/or recommended datasets (Tables S4.3 and S4.2, respectively). These references are not in alphabetical order, as the database is a ‘living’ record, so new references will be added and a new number assigned. In the recommended dataset (Table S4.2), the references are recorded according to the numbers listed below (and in Table S1.1), to ensure that citations are relatively easy for users to carry through when conducting analyses using subsets of the data, for example. If a score in the recommended dataset is supported by more than one reference, multiple reference identifiers are provided and separated by a semi-colon (;). The references are not provided as numbers / identifiers in the other versions of the dataset, as information is lost during this processing step (e.g., ‘expert opinion’, or 66, replaces comments made by experts in each reference column regarding additional observations, rationale for certainty scores, etc.), which may prove useful for some users. Other versions of the dataset thus maintain raw reference entries for transparency and as potentially useful metadata. We provide a copy of the recommended dataset without the references as numbers (Table S4.2A), in case it is easier for users to cross-reference between the two sheets to seek additional comments for a given data subset of interest. 1. Aguado, M.