Human T-Cell Leukemia Virus Oncoprotein Tax Represses Nuclear Receptor–Dependent Transcription by Targeting Coactivator TAX1BP1

Total Page:16

File Type:pdf, Size:1020Kb

Human T-Cell Leukemia Virus Oncoprotein Tax Represses Nuclear Receptor–Dependent Transcription by Targeting Coactivator TAX1BP1 Research Article Human T-Cell Leukemia Virus Oncoprotein Tax Represses Nuclear Receptor–Dependent Transcription by Targeting Coactivator TAX1BP1 King-Tung Chin,1 Abel C.S. Chun,1 Yick-Pang Ching,1,2 Kuan-Teh Jeang,3 and Dong-Yan Jin1 Departments of 1Biochemistry and 2Pathology, The University of Hong Kong, Pokfulam, Hong Kong and 3Laboratory of Molecular Microbiology, National Institute of Allergy and Infectious Diseases, Bethesda, Maryland Abstract studied. Accordingly, we understand that Tax functions as a Human T-cell leukemia virus type 1 oncoprotein Tax is a homodimer (12, 13), which docks with dimeric CREB in a ternary transcriptional regulator that interacts with a large number of complex onto the HTLV-1 21-bp TRE motifs (14). Optimal activa- host cell factors. Here, we report the novel characterization of tion of the HTLV-1 LTR by Tax requires the core HTLV-1 TATAA promoter, CREB, and the TRE (15). Separately, Tax activation of the interaction of Tax with a human cell protein named Tax1- n binding protein 1 (TAX1BP1). We show that TAX1BP1 is a NF- B is thought to occur through direct interaction with p50/p52, n n g g nuclear receptor coactivator that forms a complex with the I B, and I B kinase (IKK ; ref. 3). Moreover, Tax can also engage glucocorticoid receptor. TAX1BP1 and Tax colocalize into transcriptional coactivators such as CREB-binding protein (CBP), p300, P/CAF, and TORC1/2/3 (16–18). intranuclear speckles that partially overlap with but are not identical to the PML oncogenic domains. Tax binds TAX1BP1 Although we know much about how Tax activates transcription, directly, induces the dissociation of TAX1BP1 from the we know considerably less about how it represses gene expression. glucocorticoid receptor–containing protein complex, and Several ideas have been forwarded as to how Tax may repress the expression of cellular genes. For example, Tax has been reported to represses the coactivator function of TAX1BP1. Genetic b knockout of Tax1bp1 in mice abrogates the influence of Tax suppress the transcription of the DNA polymerase gene via direct on the activation of nuclear receptors. We propose that Tax- inhibition of basic helix-loop-helix factors (19). Tax attenuates cyclin A expression through sequestration of CREB/ATF (8), and TAX1BP1 interaction mechanistically explains the previously h reported repression of nuclear receptor activity by Tax. Tax suppresses transforming growth factor indirectly by activating the NF-nB and c-Jun signaling pathways, respectively [Cancer Res 2007;67(3):1072–81] (9, 11). Finally, Tax physically binds general transcription coactivators such as CBP, p300, and P/CAF (10, 20); its ability to Introduction inactivate the function of the p53 tumor suppressor and other Human T-cell leukemia virus type 1 (HTLV-1) was the first targets is thought to be mediated at least partially through binding retrovirus shown to be associated with a human disease, adult T- to CBP and/or p300 (9, 10, 20). cell leukemia (ATL). ATL is an aggressive neoplasm; however, its Nuclear receptors (NR) are a large family of ligand-activated induction by HTLV-1 is a slow process that takes 20 to 40 years and transcription factors that regulate gene expression in response to apparently requires the consummation of several discrete events in steroids, retinoids, and other signaling molecules (21). These the virus-infected cell (1). transcription factors play an important role in regulating The HTLV-1 Tax oncoprotein can immortalize T cells and development, differentiation, metabolism, and cell proliferation. transforms rat fibroblasts (2). Tax is a transcriptional factor, which Dysregulation of nuclear factor–dependent transcription leads to targets the HTLV-1 long terminal repeats (LTR), heterologous viral various diseases including cancer (22). A few years ago, Doucas and promoters, and a variety of cellular genes (3). Tax acts potently Evans reported that the HTLV-1 Tax protein is a general repressor through Tax-responsive (TRE) DNA elements on the LTR, which are of the transcriptional capacity of several NRs including glucocor- also cyclic AMP (cAMP)–responsive motifs recognized by the cellular ticoid receptor (GR; ref. 7). To date, it has remained unclear how transcription factor cAMP-responsive element binding protein Tax mechanistically suppresses the activity of NRs. Here, we show (CREB). Tax can also activate nuclear factor-nB(NF-nB; that the Tax1-binding protein 1 (TAX1BP1), a human cell encoded ref. 3). In various settings, Tax has been found to repress the Tax-binding protein identified by us (23), is closely related to expression of cellular genes, including DNA polymerase b (4), p53 (5, 6), coiled-coil transcriptional coactivator (CoCoA), a component of the nuclear receptors (7), cyclin A (8), c-Myb (9), MyoD (10), and p160 NR coactivator complex (24, 25). We further show that transforming growth factor b (11). TAX1BP1 is a transcriptional coactivator for NR, and that Tax Transcriptional activation of gene expression exerted by Tax represses NR function through binding to TAX1BP1. through either the CREB or the NF-nB pathway has been well Materials and Methods Plasmids. Human TAX1BP1 cDNA containing a complete coding region Note: D-Y. Jin is a Leukemia and Lymphoma Society Scholar. (Genbank U33821) was derived from an EST clone (ATCC: 104248) obtained Requests for reprints: Dong-Yan Jin, Department of Biochemistry, The University from the American Type Culture Collection (Manassas, VA). Expression of Hong Kong, 3/F Laboratory Block, Faculty of Medicine Building, 21 Sassoon plasmids pSVBP1 and pHABP1 for full-length TAX1BP1 were derived from Road, Pokfulam, Hong Kong. Phone: 852-2819-9491; Fax: 852-2855-1254; E-mail: dyjin@ previously described SV40 promoter-driven expression vectors pSV and hkucc.hku.hk. I2007 American Association for Cancer Research. pHA (26, 27). Plasmid pGSTBP1 contains TAX1BP1 cDNA inserted into doi:10.1158/0008-5472.CAN-06-3053 pGEX4T3 (Amersham, Piscataway, NJ). TAX1BP1, Tax, and the activation Cancer Res 2007; 67: (3). February 1, 2007 1072 www.aacrjournals.org Downloaded from cancerres.aacrjournals.org on September 29, 2021. © 2007 American Association for Cancer Research. HTLV-1 Tax Targets TAX1BP1 to Repress NR Signaling domain (AD) of VP16 fused to Gal4 DNA-binding domain (amino acids 1– reaction. Transfection efficiencies were normalized with a pSV-h-Gal 147) were designated GalBP1, GalTax, and GalVP16, respectively. Mamma- control plasmid (Promega, Madison, WI) expressing h-galactosidase. lian expression plasmid pGALBP1 expressing GalBP1 was derived from pM Luciferase activity was measured as described (33) using the Dual- (Clontech, Mountain View, CA). Truncated versions of TAX1BP1 were Luciferase reagents (Promega). Transfection efficiencies were normalized constructed by PCR, and the sequences of all mutants were determined to with a pRL-TK control plasmid (Promega) expressing Renilla luciferase. À À À confirm that no undesired changes were introduced. Mouse Tax1bp1 cDNA Generation of Tax1bp1+/ and Tax1bp1 / mice. The Tax1bp1 gene is (IMAGE: 1480596) in an SV40 promoter-driven expression vector pME18S- located on chromosome 6. A 12-kb EcoRI-BamHI fragment that contains FL3 was purchased from the American Type Culture Collection. exon 16 and 17 was used for generation of targeting plasmid. The thymidine Expression plasmids for Tax, GalTax, and polyhistidine-tagged Tax (His- kinase (TK) and the neomycin (neo) genes were used as selectable markers. Tax) have been described elsewhere (15, 18). Expression plasmid for In engineering the knockout mice, exon 17 of Tax1bp1 was replaced by neo. GalVP16 was from Clontech. Confirmation of successful knockout was based on PCR and Western À À Chloramphenicol acetyltransferase (CAT) reporter plasmid pG5CAT blotting. Details on knockout and in breeding of Tax1bp1 / animals are containing five copies of Gal4-binding sites was from Clontech. Luciferase presented elsewhere.4 reporter plasmid pLTRLuc under the control of the HTLV-1 LTR has been n described elsewhere (15). Reporter plasmids p BLuc, pSRELuc, and Results pCRELuc were from Stratagene (La Jolla, CA). pGRELuc was from Clontech. Expression plasmid pCDNArGR (28) for rat GR was kindly provided by Interaction of TAX1BP1 and Tax. We screened a human cDNA Dr. Keith Yamamoto (University of California, San Francisco, CA). library for Tax-binding proteins using yeast two-hybrid technology. Expression plasmid pSG5TIF2 (29) for human GR-interacting protein 1 One Tax-binding cDNA was initially designated TXBP151 (Genbank (GRIP1), also known as transcriptional intermediary factor 2 (TIF2), was a U33821) and was subsequently named by the Gene Nomenclature gift from Dr. Hinrich Gronemeyer (Institut de Ge´ne´tiqueet de Biologie Committee of the Human Genome Organization as TAX1BP1. Mole´culaire et Cellulaire, Illkirch Cedex, France). TAX1BP1 has 747-amino-acid residues, and its molecular mass is Antibodies. Polyclonal anti-TAX1BP1 antibody a-151C was raised in predicted to be 86.5 kDa. We previously reported that TAX1BP1 rabbits against a keyhole limpet hemocyanin–conjugated synthetic peptide, interacts with A20, which is an inhibitor of apoptosis and NF-nB which corresponds to the COOH-terminal 21 residues (amino acids 725– 747) of human TAX1BP1. Likewise, a-151A was against a conjugated signaling (23). Moreover, others have identified TAX1BP1 as T6BP, a peptide corresponding to amino acid residues 537 to 556 of human TRAF6-binding protein (34). TAX1BP1. a-151C and a-151A antisera were purified through HiTrap TAX1BP1 contains an NH2-terminal domain (residues 1–150) Sepharose columns (Amersham) activated by N-hydroxysuccinimide and homologous to nuclear dot protein 52 (NDP52), whose function coupled to immunizing peptides. remains elusive and controversial (35). The central region (residues Mouse monoclonal anti-Tax antibody (clone 168A51-42) and rabbit 150–600) of TAX1BP1 is predicted to form a coiled-coil structure polyclonal antiserum against Tax have been described (26, 30). Mouse (36). The COOH-terminal part (residues 668–747) of TAX1BP1 monoclonal anti-a-tubulin (clone B-5-1-2) was from Sigma (St.
Recommended publications
  • S41467-020-18249-3.Pdf
    ARTICLE https://doi.org/10.1038/s41467-020-18249-3 OPEN Pharmacologically reversible zonation-dependent endothelial cell transcriptomic changes with neurodegenerative disease associations in the aged brain Lei Zhao1,2,17, Zhongqi Li 1,2,17, Joaquim S. L. Vong2,3,17, Xinyi Chen1,2, Hei-Ming Lai1,2,4,5,6, Leo Y. C. Yan1,2, Junzhe Huang1,2, Samuel K. H. Sy1,2,7, Xiaoyu Tian 8, Yu Huang 8, Ho Yin Edwin Chan5,9, Hon-Cheong So6,8, ✉ ✉ Wai-Lung Ng 10, Yamei Tang11, Wei-Jye Lin12,13, Vincent C. T. Mok1,5,6,14,15 &HoKo 1,2,4,5,6,8,14,16 1234567890():,; The molecular signatures of cells in the brain have been revealed in unprecedented detail, yet the ageing-associated genome-wide expression changes that may contribute to neurovas- cular dysfunction in neurodegenerative diseases remain elusive. Here, we report zonation- dependent transcriptomic changes in aged mouse brain endothelial cells (ECs), which pro- minently implicate altered immune/cytokine signaling in ECs of all vascular segments, and functional changes impacting the blood–brain barrier (BBB) and glucose/energy metabolism especially in capillary ECs (capECs). An overrepresentation of Alzheimer disease (AD) GWAS genes is evident among the human orthologs of the differentially expressed genes of aged capECs, while comparative analysis revealed a subset of concordantly downregulated, functionally important genes in human AD brains. Treatment with exenatide, a glucagon-like peptide-1 receptor agonist, strongly reverses aged mouse brain EC transcriptomic changes and BBB leakage, with associated attenuation of microglial priming. We thus revealed tran- scriptomic alterations underlying brain EC ageing that are complex yet pharmacologically reversible.
    [Show full text]
  • Depletion of TAX1BP1 Amplifies Innate Immune Responses During Respiratory
    bioRxiv preprint doi: https://doi.org/10.1101/2021.06.03.447014; this version posted June 7, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Depletion of TAX1BP1 amplifies innate immune responses during respiratory 2 syncytial virus infection 3 4 Running title: Revealing the role of TAX1BP1 during RSV infection 5 6 Delphyne Descamps1*, Andressa Peres de Oliveira2, Lorène Gonnin1, Sarah Madrières1, Jenna Fix1, 7 Carole Drajac1, Quentin Marquant1, Edwige Bouguyon1, Vincent Pietralunga1, Hidekatsu Iha4, 8 Armando Morais Ventura2, Frédéric Tangy3, Pierre-Olivier Vidalain3,5, Jean-François Eléouët1, and 9 Marie Galloux1* 10 11 1 Université Paris-Saclay, INRAE, UVSQ, VIM, 78350, Jouy-en-Josas, France. 12 2 Departamento de Microbiologia, Instituto de Ciências Biomédicas, Universidade de São Paulo, São 13 Paulo, Brazil 14 3 Unité de Génomique Virale et Vaccination, Institut Pasteur, CNRS UMR-3569, 75015 Paris, France. 15 4 Department of Infectious Diseases, Faculty of Medicine, Oita University Idaiga-oka, Hasama Yufu, 16 Japan 17 5 CIRI, Centre International de Recherche en Infectiologie, Univ Lyon, Inserm, U1111, Université 18 Claude Bernard Lyon 1, CNRS, UMR5308, ENS de Lyon, F-69007, Lyon, France. 19 20 * Correspondence: [email protected] and [email protected] 21 22 Keywords: RSV, TAX1BP1, nucleoprotein, innate immunity, interferons, lung, yeast two-hydrid 23 screening 24 25 26 27 28 29 30 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.06.03.447014; this version posted June 7, 2021.
    [Show full text]
  • Identification of Differentially Expressed Genes in Human Bladder Cancer Through Genome-Wide Gene Expression Profiling
    521-531 24/7/06 18:28 Page 521 ONCOLOGY REPORTS 16: 521-531, 2006 521 Identification of differentially expressed genes in human bladder cancer through genome-wide gene expression profiling KAZUMORI KAWAKAMI1,3, HIDEKI ENOKIDA1, TOKUSHI TACHIWADA1, TAKENARI GOTANDA1, KENGO TSUNEYOSHI1, HIROYUKI KUBO1, KENRYU NISHIYAMA1, MASAKI TAKIGUCHI2, MASAYUKI NAKAGAWA1 and NAOHIKO SEKI3 1Department of Urology, Graduate School of Medical and Dental Sciences, Kagoshima University, 8-35-1 Sakuragaoka, Kagoshima 890-8520; Departments of 2Biochemistry and Genetics, and 3Functional Genomics, Graduate School of Medicine, Chiba University, 1-8-1 Inohana, Chuo-ku, Chiba 260-8670, Japan Received February 15, 2006; Accepted April 27, 2006 Abstract. Large-scale gene expression profiling is an effective CKS2 gene not only as a potential biomarker for diagnosing, strategy for understanding the progression of bladder cancer but also for staging human BC. This is the first report (BC). The aim of this study was to identify genes that are demonstrating that CKS2 expression is strongly correlated expressed differently in the course of BC progression and to with the progression of human BC. establish new biomarkers for BC. Specimens from 21 patients with pathologically confirmed superficial (n=10) or Introduction invasive (n=11) BC and 4 normal bladder samples were studied; samples from 14 of the 21 BC samples were subjected Bladder cancer (BC) is among the 5 most common to microarray analysis. The validity of the microarray results malignancies worldwide, and the 2nd most common tumor of was verified by real-time RT-PCR. Of the 136 up-regulated the genitourinary tract and the 2nd most common cause of genes we detected, 21 were present in all 14 BCs examined death in patients with cancer of the urinary tract (1-7).
    [Show full text]
  • A20 (Tnfaip3) Is a Negative Feedback Regulator of RIG-I-Mediated IFN Induction in Teleost T
    Fish and Shellfish Immunology 84 (2019) 857–864 Contents lists available at ScienceDirect Fish and Shellfish Immunology journal homepage: www.elsevier.com/locate/fsi Full length article A20 (tnfaip3) is a negative feedback regulator of RIG-I-Mediated IFN induction in teleost T Emilie Mérour, Raphaël Jami, Annie Lamoureux, Julie Bernard, Michel Brémont, ∗ Stéphane Biacchesi VIM, INRA, Université Paris-Saclay, 78350, Jouy-en-Josas, France ARTICLE INFO ABSTRACT Keywords: Interferon production is tightly regulated in order to prevent excessive immune responses. The RIG-I signaling A20 pathway, which is one of the major pathways inducing the production of interferon, is therefore finely regulated TNFAIP3 through the participation of different molecules such as A20 (TNFAIP3). A20 is a negative key regulatory factor RIG-I of the immune response. Although A20 has been identified and actively studied in mammals, nothing is known Interferon about its putative function in lower vertebrates. In this study, we sought to define the involvement of fish A20 Teleost orthologs in the regulation of RIG-I signaling. We showed that A20 completely blocked the activation of IFN and ISG promoters mediated by RIG-I. Furthermore, A20 expression in fish cells was sufficient to reverse the antiviral state induced by the expression of a constitutively active form of RIG-I, thus allowing the efficient replication of a fish rhabdovirus, the viral hemorrhagic septicemia virus (VHSV). We brought evidence that A20 interrupted RIG-I signaling at the level of TBK1 kinase, a critical point of convergence for many different pathways that activates important transcription factors involved in the expression of many cytokines.
    [Show full text]
  • Role and Mechanisms of Mitophagy in Liver Diseases
    cells Review Role and Mechanisms of Mitophagy in Liver Diseases Xiaowen Ma 1, Tara McKeen 1, Jianhua Zhang 2 and Wen-Xing Ding 1,* 1 Department of Pharmacology, Toxicology and Therapeutics, University of Kansas Medical Center, 3901 Rainbow Blvd., Kansas City, KS 66160, USA; [email protected] (X.M.); [email protected] (T.M.) 2 Department of Pathology, Division of Molecular Cellular Pathology, University of Alabama at Birmingham, 901 19th street South, Birmingham, AL 35294, USA; [email protected] * Correspondence: [email protected]; Tel.: +1-913-588-9813 Received: 13 February 2020; Accepted: 28 March 2020; Published: 31 March 2020 Abstract: The mitochondrion is an organelle that plays a vital role in the regulation of hepatic cellular redox, lipid metabolism, and cell death. Mitochondrial dysfunction is associated with both acute and chronic liver diseases with emerging evidence indicating that mitophagy, a selective form of autophagy for damaged/excessive mitochondria, plays a key role in the liver’s physiology and pathophysiology. This review will focus on mitochondrial dynamics, mitophagy regulation, and their roles in various liver diseases (alcoholic liver disease, non-alcoholic fatty liver disease, drug-induced liver injury, hepatic ischemia-reperfusion injury, viral hepatitis, and cancer) with the hope that a better understanding of the molecular events and signaling pathways in mitophagy regulation will help identify promising targets for the future treatment of liver diseases. Keywords: alcohol; autophagy; mitochondria; NAFLD; Parkin; Pink1 1. Introduction Autophagy (or macroautophagy) involves the formation of a double membrane structure called an autophagosome. Autophagosomes bring the enveloped cargoes to the lysosomes to form autolysosomes where the lysosomal enzymes consequently degrade the cargos [1,2].
    [Show full text]
  • Mechanistic Insights Into the Interactions of NAP1 with the SKICH Domains of NDP52 and TAX1BP1
    Mechanistic insights into the interactions of NAP1 with the SKICH domains of NDP52 and TAX1BP1 Tao Fua, Jianping Liua, Yingli Wanga, Xingqiao Xiea, Shichen Hua, and Lifeng Pana,1 aState Key Laboratory of Bioorganic and Natural Products Chemistry, Center for Excellence in Molecular Synthesis, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences, 200032 Shanghai, China Edited by Beth Levine, The University of Texas Southwestern, Dallas, TX, and approved October 30, 2018 (received for review July 3, 2018) NDP52 and TAX1BP1, two SKIP carboxyl homology (SKICH) domain- enterica Typhimurium, and the depolarized mitochondria (mitoph- containing autophagy receptors, play crucial roles in selective agy) (15–18). In addition, NDP52 was reported to mediate selective autophagy. The autophagic functions of NDP52 and TAX1BP1 are autophagic degradations of retrotransposon RNA (19) and specific regulated by TANK-binding kinase 1 (TBK1), which may associate functional proteins, including DICER and AGO2 in the miRNA with them through the adaptor NAP1. However, the molecular pathway and MAVS in immune signaling (20, 21). Notably, genetic mechanism governing the interactions of NAP1 with NDP52 and mutation of NDP52 is directly linked to Crohn’s disease, a type of TAX1BP1, as well as the effects induced by TBK1-mediated phos- inflammatory bowel disease likely caused by a combination of en- phorylation of NDP52 and TAX1BP1, remains elusive. Here, we vironmental, immune, and bacterial factors (22). Except for the report the atomic structures of the SKICH regions of NDP52 and diverse central coiled-coil region, NDP52 and TAX1BP1 share a TAX1BP1 in complex with NAP1, which not only uncover the mech- highly similar domain structure (Fig.
    [Show full text]
  • Downregulation of A20 Expression Increases the Immune Response and Apoptosis and Reduces Virus Production in Cells Infected by the Human Respiratory Syncytial Virus
    Article Downregulation of A20 Expression Increases the Immune Response and Apoptosis and Reduces Virus Production in Cells Infected by the Human Respiratory Syncytial Virus María Martín-Vicente 1 , Rubén González-Sanz 1, Isabel Cuesta 2, Sara Monzón 2, 1, 1, Salvador Resino y and Isidoro Martínez * 1 Unidad de Infección Viral e Inmunidad, Centro Nacional de Microbiología, Instituto de Salud Carlos III, Majadahonda, 28220 Madrid, Spain; [email protected] (M.M.-V.); [email protected] (R.G.-S.); [email protected] (S.R.) 2 Unidad de Bioinformática, Centro Nacional de Microbiología, Instituto de Salud Carlos III, Majadahonda, 28220 Madrid, Spain; [email protected] (I.C.); [email protected] (S.M.) * Correspondence: [email protected]; Tel.: +34-91-8223272; Fax: +34-91-5097919 Alternative correspondence: [email protected]; Tel.: +34-91-822-3266; Fax: +34-91-509-7919. y Received: 8 January 2020; Accepted: 19 February 2020; Published: 24 February 2020 Abstract: Human respiratory syncytial virus (HRSV) causes severe lower respiratory tract infections in infants, the elderly, and immunocompromised adults. Regulation of the immune response against HRSV is crucial to limiting virus replication and immunopathology. The A20/TNFAIP3 protein is a negative regulator of nuclear factor kappa B (NF-κB) and interferon regulatory factors 3/7 (IRF3/7), which are key transcription factors involved in the inflammatory/antiviral response of epithelial cells to virus infection. Here, we investigated the impact of A20 downregulation or knockout on HRSV growth and the induction of the immune response in those cells. Cellular infections in which the expression of A20 was silenced by siRNAs or eliminated by gene knockout showed increased inflammatory/antiviral response and reduced virus production.
    [Show full text]
  • Array Painting Reveals a High Frequency of Balanced Translocations in Breast Cancer Cell Lines That Break in Cancer-Relevant Genes
    Oncogene (2008) 27, 3345–3359 & 2008 Nature Publishing Group All rights reserved 0950-9232/08 $30.00 www.nature.com/onc ONCOGENOMICS Array painting reveals a high frequency of balanced translocations in breast cancer cell lines that break in cancer-relevant genes KD Howarth1, KA Blood1,BLNg2, JC Beavis1, Y Chua1, SL Cooke1, S Raby1, K Ichimura3, VP Collins3, NP Carter2 and PAW Edwards1 1Department of Pathology, Hutchison-MRC Research Centre, University of Cambridge, Cambridge, UK; 2Wellcome Trust Sanger Institute, Cambridge, UK and 3Department of Pathology, Division of Molecular Histopathology, Addenbrookes Hospital, University of Cambridge, Cambridge, UK Chromosome translocations in the common epithelial tion and inversion, which can result in gene fusion, cancers are abundant, yet little is known about them. promoter insertion or gene inactivation. As is well They have been thought to be almost all unbalanced and known in haematopoietic tumours and sarcomas, therefore dismissed as mostly mediating tumour suppres- translocations and inversions can have powerful onco- sor loss. We present a comprehensive analysis by array genic effects on specific genes and play a central role in painting of the chromosome translocations of breast cancer development (Rowley, 1998). In the past there cancer cell lines HCC1806, HCC1187 and ZR-75-30. In has been an implicit assumption that such rearrange- array painting, chromosomes are isolated by flow ments are not significant players in the common cytometry, amplified and hybridized to DNA microarrays. epithelial
    [Show full text]
  • Oligomerization of Selective Autophagy Receptors for the Targeting and Degradation of Protein Aggregates
    cells Review Oligomerization of Selective Autophagy Receptors for the Targeting and Degradation of Protein Aggregates Wenjun Chen 1,2, Tianyun Shen 1, Lijun Wang 1 and Kefeng Lu 1,* 1 Department of Neurosurgery, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu 610041, China; [email protected] (W.C.); [email protected] (T.S.); [email protected] (L.W.) 2 Department of Neurology, Shanxi Provincial People’s Hospital, Taiyuan 030012, China * Correspondence: [email protected] Abstract: The selective targeting and disposal of solid protein aggregates are essential for cells to maintain protein homoeostasis. Autophagy receptors including p62, NBR1, Cue5/TOLLIP (CUET), and Tax1-binding protein 1 (TAX1BP1) proteins function in selective autophagy by targeting ubiq- uitinated aggregates through ubiquitin-binding domains. Here, we summarize previous beliefs and recent findings on selective receptors in aggregate autophagy. Since there are many reviews on selective autophagy receptors, we focus on their oligomerization, which enables receptors to function as pathway determinants and promotes phase separation. Keywords: receptors; autophagy; proteasome; ubiquitin; p62; Dsk2; Cue5; TAX1BP1 1. Introduction Citation: Chen, W.; Shen, T.; Wang, Protein misfolding and the subsequent aggregation caused by various stressors can L.; Lu, K. Oligomerization of Selective be cytotoxic to cells and may lead to cell death. To maintain cellular homeostasis, organ- Autophagy Receptors for the isms use various protein quality-control pathways to either repair misfolded proteins or Targeting and Degradation of Protein target them for degradation if misfolding or aggregation persists [1,2]. In general, pro- Aggregates. Cells 2021, 10, 1989. tein substrates with different statuses, soluble or aggregated, are targeted and degraded https://doi.org/10.3390/cells10081989 by proteasome and autophagy pathways, respectively [3].
    [Show full text]
  • Molecular Targeting and Enhancing Anticancer Efficacy of Oncolytic HSV-1 to Midkine Expressing Tumors
    University of Cincinnati Date: 12/20/2010 I, Arturo R Maldonado , hereby submit this original work as part of the requirements for the degree of Doctor of Philosophy in Developmental Biology. It is entitled: Molecular Targeting and Enhancing Anticancer Efficacy of Oncolytic HSV-1 to Midkine Expressing Tumors Student's name: Arturo R Maldonado This work and its defense approved by: Committee chair: Jeffrey Whitsett Committee member: Timothy Crombleholme, MD Committee member: Dan Wiginton, PhD Committee member: Rhonda Cardin, PhD Committee member: Tim Cripe 1297 Last Printed:1/11/2011 Document Of Defense Form Molecular Targeting and Enhancing Anticancer Efficacy of Oncolytic HSV-1 to Midkine Expressing Tumors A dissertation submitted to the Graduate School of the University of Cincinnati College of Medicine in partial fulfillment of the requirements for the degree of DOCTORATE OF PHILOSOPHY (PH.D.) in the Division of Molecular & Developmental Biology 2010 By Arturo Rafael Maldonado B.A., University of Miami, Coral Gables, Florida June 1993 M.D., New Jersey Medical School, Newark, New Jersey June 1999 Committee Chair: Jeffrey A. Whitsett, M.D. Advisor: Timothy M. Crombleholme, M.D. Timothy P. Cripe, M.D. Ph.D. Dan Wiginton, Ph.D. Rhonda D. Cardin, Ph.D. ABSTRACT Since 1999, cancer has surpassed heart disease as the number one cause of death in the US for people under the age of 85. Malignant Peripheral Nerve Sheath Tumor (MPNST), a common malignancy in patients with Neurofibromatosis, and colorectal cancer are midkine- producing tumors with high mortality rates. In vitro and preclinical xenograft models of MPNST were utilized in this dissertation to study the role of midkine (MDK), a tumor-specific gene over- expressed in these tumors and to test the efficacy of a MDK-transcriptionally targeted oncolytic HSV-1 (oHSV).
    [Show full text]
  • Genome Provides Insights Into Vertebrate Evolution
    ARTICLES OPEN Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution Jeramiah J Smith1,2, Shigehiro Kuraku3,4, Carson Holt5,37, Tatjana Sauka-Spengler6,37, Ning Jiang7, Michael S Campbell5, Mark D Yandell5, Tereza Manousaki4, Axel Meyer4, Ona E Bloom8,9, Jennifer R Morgan10, Joseph D Buxbaum11–14, Ravi Sachidanandam11, Carrie Sims15, Alexander S Garruss15, Malcolm Cook15, Robb Krumlauf15,16, Leanne M Wiedemann15,17, Stacia A Sower18, Wayne A Decatur18, Jeffrey A Hall18, Chris T Amemiya2,19, Nil R Saha2, Katherine M Buckley20,21, Jonathan P Rast20,21, Sabyasachi Das22,23, Masayuki Hirano22,23, Nathanael McCurley22,23, Peng Guo22,23, Nicolas Rohner24, Clifford J Tabin24, Paul Piccinelli25, Greg Elgar25, Magali Ruffier26, Bronwen L Aken26, Stephen M J Searle26, Matthieu Muffato27, Miguel Pignatelli27, Javier Herrero27, Matthew Jones6, C Titus Brown28,29, Yu-Wen Chung-Davidson30, Kaben G Nanlohy30, Scot V Libants30, Chu-Yin Yeh30, David W McCauley31, James A Langeland32, Zeev Pancer33, Bernd Fritzsch34, Pieter J de Jong35, Baoli Zhu35,37, Lucinda L Fulton36, Brenda Theising36, Paul Flicek27, Marianne E Bronner6, All rights reserved. Wesley C Warren36, Sandra W Clifton36,37, Richard K Wilson36 & Weiming Li30 Lampreys are representatives of an ancient vertebrate lineage that diverged from our own ~500 million years ago. By virtue of this deeply shared ancestry, the sea lamprey (P. marinus) genome is uniquely poised to provide insight into the ancestry of vertebrate genomes and the underlying principles of vertebrate biology. Here, we present the first lamprey whole-genome sequence and America, Inc. assembly. We note challenges faced owing to its high content of repetitive elements and GC bases, as well as the absence of broad-scale sequence information from closely related species.
    [Show full text]
  • Regulation of NF-Κb Signaling by the A20 Deubiquitinase
    Cellular & Molecular Immunology (2012) 9, 123–130 ß 2012 CSI and USTC. All rights reserved 1672-7681/12 $32.00 www.nature.com/cmi REVIEW Regulation of NF-kB signaling by the A20 deubiquitinase Noula Shembade and Edward W Harhaj The NF-kB transcription factor is a central mediator of inflammatory and innate immune signaling pathways. Activation of NF-kBis achieved by K63-linked polyubiquitination of key signaling molecules which recruit kinase complexes that in turn activate the IkB kinase (IKK). Ubiquitination is a highly dynamic process and is balanced by deubiquitinases that cleave polyubiquitin chains and terminate downstream signaling events. The A20 deubiquitinase is a critical negative regulator of NF-kB and inflammation, since A20-deficient mice develop uncontrolled and spontaneous multi-organ inflammation. Furthermore, specific polymorphisms in the A20 genomic locus predispose humans to autoimmune disease. Recent studies also indicate that A20 is an important tumor suppressor that is inactivated in B-cell lymphomas. Therefore, targeting A20 may form the basis of novel therapies for autoimmune disease and lymphomas. Cellular & Molecular Immunology (2012) 9, 123–130; doi:10.1038/cmi.2011.59; published online 20 February 2012 Keywords: A20; inflammation; NF-kB; ubiquitin INTRODUCTION covalently attached to lysine residues on protein substrates and either The NF-kB transcription factor is ubiquitously expressed and is triggers proteasomal degradation, protein trafficking, signal transduc- activated by diverse immune stimulatory ligands, including inter- tion or the DNA damage response. Ubiquitination involves a three-step leukin-1b (IL-1b), tumor necrosis factor-a (TNF-a), bacterial lipo- enzymatic reaction catalyzed by three classes of proteins: E1 ubiquitin- polysaccharide (LPS) and antigenic peptides.
    [Show full text]