Developmental Diversity in Free-Living Flatworms Martín-Durán and Egger
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Towards a Management Hierarchy (Classification) for the Catalogue of Life
TOWARDS A MANAGEMENT HIERARCHY (CLASSIFICATION) FOR THE CATALOGUE OF LIFE Draft Discussion Document Rationale The Catalogue of Life partnership, comprising Species 2000 and ITIS (Integrated Taxonomic Information System), has the goal of achieving a comprehensive catalogue of all known species on Earth by the year 2011. The actual number of described species (after correction for synonyms) is not presently known but estimates suggest about 1.8 million species. The collaborative teams behind the Catalogue of Life need an agreed standard classification for these 1.8 million species, i.e. a working hierarchy for management purposes. This discussion document is intended to highlight some of the issues that need clarifying in order to achieve this goal beyond what we presently have. Concerning Classification Life’s diversity is classified into a hierarchy of categories. The best-known of these is the Kingdom. When Carl Linnaeus introduced his new “system of nature” in the 1750s ― Systema Naturae per Regna tria naturae, secundum Classes, Ordines, Genera, Species …) ― he recognised three kingdoms, viz Plantae, Animalia, and a third kingdom for minerals that has long since been abandoned. As is evident from the title of his work, he introduced lower-level taxonomic categories, each successively nested in the other, named Class, Order, Genus, and Species. The most useful and innovative aspect of his system (which gave rise to the scientific discipline of Systematics) was the use of the binominal, comprising genus and species, that uniquely identified each species of organism. Linnaeus’s system has proven to be robust for some 250 years. The starting point for botanical names is his Species Plantarum, published in 1753, and that for zoological names is the tenth edition of the Systema Naturae published in 1758. -
The Free-Living Flatworm Macrostomum Lignano
ARTICLE IN PRESS Experimental Gerontology xxx (2009) xxx–xxx Contents lists available at ScienceDirect Experimental Gerontology journal homepage: www.elsevier.com/locate/expgero Review The free-living flatworm Macrostomum lignano: A new model organism for ageing research Stijn Mouton a,*, Maxime Willems a, Bart P. Braeckman b, Bernhard Egger c, Peter Ladurner c, Lukas Schärer d, Gaetan Borgonie a a Nematology Unit, Department of Biology, Ghent University, Ledeganckstraat 35, 9000 Ghent, Belgium b Laboratory for Ageing Physiology and Molecular Evolution, Department of Biology, Ghent University, Ledeganckstraat 35, 9000 Ghent, Belgium c Ultrastructural Research and Evolutionary Biology, Institute of Zoology, University of Innsbruck, Technikerstrasse 25, 6020 Innsbruck, Austria d Evolutionary Biology, Zoological Institute, University of Basel, Vesalgasse 1, 4051 Basel, Switzerland article info abstract Article history: To study the several elements and causes of ageing, diverse model organisms and methodologies are Received 5 September 2008 required. The most frequently used models are Saccharomyces cerevisiae, Caenorhabditis elegans, Drosoph- Received in revised form 6 November 2008 ila melanogaster and rodents. All have their advantages and disadvantages and allow studying particular Accepted 28 November 2008 aspects of the ageing process. During the last few years, several ageing studies focussed on stem cells and Available online xxxx their role in tissue homeostasis. Here we present a new model organism which can study this relation where other model systems fail. The flatworm Macrostomum lignano possesses a dynamic population Keywords: of likely totipotent somatic stem cells known as neoblasts. Several characteristics qualify M. lignano as Flatworm a suitable model system for ageing studies in general and more specifically for gaining more insight in Macrostomum lignano Ageing the causal relation between stem cells, ageing and rejuvenation. -
Platyhelminthes: Tricladida: Terricola) of the Australian Region
ResearchOnline@JCU This file is part of the following reference: Winsor, Leigh (2003) Studies on the systematics and biogeography of terrestrial flatworms (Platyhelminthes: Tricladida: Terricola) of the Australian region. PhD thesis, James Cook University. Access to this file is available from: http://eprints.jcu.edu.au/24134/ The author has certified to JCU that they have made a reasonable effort to gain permission and acknowledge the owner of any third party copyright material included in this document. If you believe that this is not the case, please contact [email protected] and quote http://eprints.jcu.edu.au/24134/ Studies on the Systematics and Biogeography of Terrestrial Flatworms (Platyhelminthes: Tricladida: Terricola) of the Australian Region. Thesis submitted by LEIGH WINSOR MSc JCU, Dip.MLT, FAIMS, MSIA in March 2003 for the degree of Doctor of Philosophy in the Discipline of Zoology and Tropical Ecology within the School of Tropical Biology at James Cook University Frontispiece Platydemus manokwari Beauchamp, 1962 (Rhynchodemidae: Rhynchodeminae), 40 mm long, urban habitat, Townsville, north Queensland dry tropics, Australia. A molluscivorous species originally from Papua New Guinea which has been introduced to several countries in the Pacific region. Common. (photo L. Winsor). Bipalium kewense Moseley,1878 (Bipaliidae), 140mm long, Lissner Park, Charters Towers, north Queensland dry tropics, Australia. A cosmopolitan vermivorous species originally from Vietnam. Common. (photo L. Winsor). Fletchamia quinquelineata (Fletcher & Hamilton, 1888) (Geoplanidae: Caenoplaninae), 60 mm long, dry Ironbark forest, Maryborough, Victoria. Common. (photo L. Winsor). Tasmanoplana tasmaniana (Darwin, 1844) (Geoplanidae: Caenoplaninae), 35 mm long, tall open sclerophyll forest, Kamona, north eastern Tasmania, Australia. -
Genome and Transcriptome of the Regeneration- Competent Flatworm, Macrostomum Lignano
Genome and transcriptome of the regeneration- competent flatworm, Macrostomum lignano Kaja Wasika,1, James Gurtowskia,1, Xin Zhoua,b, Olivia Mendivil Ramosa, M. Joaquina Delása,c, Giorgia Battistonia,c, Osama El Demerdasha, Ilaria Falciatoria,c, Dita B. Vizosod, Andrew D. Smithe, Peter Ladurnerf, Lukas Schärerd, W. Richard McCombiea, Gregory J. Hannona,c,2, and Michael Schatza,2 aWatson School of Biological Sciences, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724; bMolecular and Cellular Biology Graduate Program, Stony Brook University, NY 11794; cCancer Research UK Cambridge Institute, University of Cambridge, Cambridge CB2 0RE, United Kingdom; dDepartment of Evolutionary Biology, Zoological Institute, University of Basel, 4051 Basel, Switzerland; eDepartment of Molecular and Computational Biology, University of Southern California, Los Angeles, CA 90089; and fDepartment of Evolutionary Biology, Institute of Zoology and Center for Molecular Biosciences Innsbruck, University of Innsbruck, A-6020 Innsbruck, Austria Contributed by Gregory J. Hannon, August 23, 2015 (sent for review June 25, 2015; reviewed by Ian Korf and Robert E. Steele) The free-living flatworm, Macrostomum lignano has an impressive of all cells (15), and have a very high proliferation rate (16, 17). Of regenerative capacity. Following injury, it can regenerate almost M. lignano neoblasts, 89% enter S-phase every 24 h (18). This high an entirely new organism because of the presence of an abundant mitotic activity results in a continuous stream of progenitors, somatic stem cell population, the neoblasts. This set of unique replacing tissues that are likely devoid of long-lasting, differentiated properties makes many flatworms attractive organisms for study- cell types (18). This makes M. -
Atp8 Is in the Ground Pattern of Flatworm Mitochondrial Genomes Bernhard Egger1* , Lutz Bachmann2 and Bastian Fromm3
Egger et al. BMC Genomics (2017) 18:414 DOI 10.1186/s12864-017-3807-2 RESEARCH ARTICLE Open Access Atp8 is in the ground pattern of flatworm mitochondrial genomes Bernhard Egger1* , Lutz Bachmann2 and Bastian Fromm3 Abstract Background: To date, mitochondrial genomes of more than one hundred flatworms (Platyhelminthes) have been sequenced. They show a high degree of similarity and a strong taxonomic bias towards parasitic lineages. The mitochondrial gene atp8 has not been confidently annotated in any flatworm sequenced to date. However, sampling of free-living flatworm lineages is incomplete. We addressed this by sequencing the mitochondrial genomes of the two small-bodied (about 1 mm in length) free-living flatworms Stenostomum sthenum and Macrostomum lignano as the first representatives of the earliest branching flatworm taxa Catenulida and Macrostomorpha respectively. Results: We have used high-throughput DNA and RNA sequence data and PCR to establish the mitochondrial genome sequences and gene orders of S. sthenum and M. lignano. The mitochondrial genome of S. sthenum is 16,944 bp long and includes a 1,884 bp long inverted repeat region containing the complete sequences of nad3, rrnS, and nine tRNA genes. The model flatworm M. lignano has the smallest known mitochondrial genome among free- living flatworms, with a length of 14,193 bp. The mitochondrial genome of M. lignano lacks duplicated genes, however, tandem repeats were detected in a non-coding region. Mitochondrial gene order is poorly conserved in flatworms, only a single pair of adjacent ribosomal or protein-coding genes – nad4l-nad4 – was found in S. sthenum and M. -
Cellular Dynamics During Regeneration of the Flatworm Monocelis Sp. (Proseriata, Platyhelminthes) Girstmair Et Al
Cellular dynamics during regeneration of the flatworm Monocelis sp. (Proseriata, Platyhelminthes) Girstmair et al. Girstmair et al. EvoDevo 2014, 5:37 http://www.evodevojournal.com/content/5/1/37 Girstmair et al. EvoDevo 2014, 5:37 http://www.evodevojournal.com/content/5/1/37 RESEARCH Open Access Cellular dynamics during regeneration of the flatworm Monocelis sp. (Proseriata, Platyhelminthes) Johannes Girstmair1,2, Raimund Schnegg1,3, Maximilian J Telford2 and Bernhard Egger1,2* Abstract Background: Proseriates (Proseriata, Platyhelminthes) are free-living, mostly marine, flatworms measuring at most a few millimetres. In common with many flatworms, they are known to be capable of regeneration; however, few studies have been done on the details of regeneration in proseriates, and none cover cellular dynamics. We have tested the regeneration capacity of the proseriate Monocelis sp. by pre-pharyngeal amputation and provide the first comprehensive picture of the F-actin musculature, serotonergic nervous system and proliferating cells (S-phase in pulse and pulse-chase experiments and mitoses) in control animals and in regenerates. Results: F-actin staining revealed a strong body wall, pharynx and dorsoventral musculature, while labelling of the serotonergic nervous system showed an orthogonal pattern and a well developed subepidermal plexus. Proliferating cells were distributed in two broad lateral bands along the anteroposterior axis and their anterior extension was delimited by the brain. No proliferating cells were detected in the pharynx or epidermis. Monocelis sp. was able to regenerate the pharynx and adhesive organs at the tip of the tail plate within 2 or 3 days of amputation, and genital organs within 8 to 10 days. -
179986V1.Full.Pdf
bioRxiv preprint doi: https://doi.org/10.1101/179986; this version posted August 24, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Cellular, ultrastructural and molecular analyses of epidermal cell development in the planarian Schmidtea mediterranea. Li-Chun Cheng1, Kimberly C. Tu1, Chris W. Seidel1, Sofia M.C. Robb1, Fengli Guo1, and Alejandro Sánchez Alvarado1,2* 1Stowers Institute for Medical Research, Kansas City, United States 2Howard Hughes Medical Institute, Stowers Institute for Medical Research, Kansas City, United States *Corresponding author. E-mail: [email protected] Short title: transcriptional regulation of epidermal differentiation Key words: epidermis, stem cells, transcription, p53, zfp-1, pax-2/5/8, soxP-3 1 bioRxiv preprint doi: https://doi.org/10.1101/179986; this version posted August 24, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract The epidermis is essential for animal survival, providing both a protective barrier and cellular sensor to external environments. The generally conserved embryonic origin of the epidermis, but the broad morphological and functional diversity of this organ across animals is puzzling. We define the transcriptional regulators underlying epidermal lineage differentiation in the planarian Schmidtea mediterranea, an invertebrate organism that, unlike fruitflies and nematodes, continuously replaces its epidermal cells. -
By MASAHARU KAWAKATSU, EUDOXIA MARIA FROEHLICH and HUGH D
Kawakatsu’s Web Library on Planarians: June 30, 2014. MISCELLANEOUS PAPERS ON “TURBELLARIANS” By MASAHARU KAWAKATSU, EUDÓXIA MARIA FROEHLICH, HUGH D. JONES, MIYUKI KAWAKATSU and TETSUYA KAWAKATSU ARTICLE II: ADDENDUM (2013) ADDITIONS AND CORRECTIONS OF THE PREVIOUS LAND PLANARIAN INDICES OF THE WORLD (PLATYHELMINTHES, SERIATA, TRICLADIDA, CONTINENTICOLA, GEOPLANOIDEA) ADDITIONS AND CORRECTIONS OF THE PREVIOUS LAND PLANARIAN INDICES OF THE WORLD- 22 (ADDENDUM for 2013) By MASAHARU KAWAKATSU, EUDOXIA MARIA FROEHLICH and HUGH D. JONES INTRODUCTION The present publication is a continuation of our Land Planarian Indices Series. As was written in the “Special Note” (on p. 15 of the previous publication of this series: December 25, 2013), the complete list of all the taxonomic items found in the following paper is given. Carbayo, F., Álvarez-Presas, M., Olivarez, G. T., Marques, F. P. L., Froehlich, E. M. & Riutort, M., 2013. Molecular phylogeny of Geoplaninae (Platyhelminthes) challenges current classification: Proposal of taxonomic actions. Zool. Scripta, 42 (5): 508-528 (+ 3 graphic figures: Figs S1 and S2; Tables S1-S5). http://doi:10.1111/zsc.12019 http://onlinelibrary.wiley.com/journal/10.1111 (ISSN 1463-6409) Abbreviations for publications of the Land Planarian Indices Series: BFC = Bulletin of Fuji Women’s College, Ser. II; BFU = Bulletin of Fuji Women’s University, Ser. II (after 2002); OC = Occasional Publications, Biological Laboratory of Fuji Women’s College, Sapporo (Hokkaidô), Japan; KWLP = Kawakatsu’s Web Library on Planarians. Note 1. All of the taxonomic items including in the Supporting Information (Figs S1 and S2; Tables S1-S5: 15 pages in total) are not listed in the present web article. -
Platyhelminthes, Proseriata): Inferences from Rdna Sequences
327 MOLECULAR PHYLOGENETICS AND EVOLUTION Vol. 6, No. 1, August, pp. 150-156, 1996 ARTICLE NO. 0067 A Reappraisal of the Systematics of the Monocelididae (Platyhelminthes, Proseriata): Inferences from rDNA Sequences M . K . L it v a it is , * M . C . C u r in i -G a l l e t t i ,+ P . M . M a r t e n s , * a n d T . D . K o c h e r * * Department o f Zoology, University o f New Hampshire, Durham, New Hampshire; t Istituto d i Zoología, Université degii Studi di Sassari, Sassari, Italy; and * Department SBM, Limburgs Universitair Centrum, Diepenbeek, Belgium Received August 11, 1995 on the presence (Minoninae) or the absence (Monoceli The current classification system for the Monocelidi dinae) of the accessory prostatoid organ, a musculo- dae which is based on the character “presence or ab glandular structure armed with a stylet (Fig. 1), and sence of an accessory prostatoid organ” divides the he attributed less phylogenetic weight to the structure family into two subfamilies, namely the Minoninae and of the male copulatory bulb. Within the Monocelididae, the Monocelidinae. However, other characters re the copulatory bulb is of the conjuncta type (Karling, lating to the structure of the male copulatory bulb and 1956), and two subtypes can be recognized. The sim to karyotypes do not support this division. Monoceli- plex-type consists of a single muscular wall, which de d id m ale c o p u la to ry b u lb s c an b e e ith e r o f th e sim plex rives from the last portion of the ductus ejaculatorius or the duplex-type, and if this character is mapped (Fig. -
Microstomum (Platyhelminthes, Macrostomorpha, Microstomidae) from the Swedish West Coast: Two New Species and a Population Description
European Journal of Taxonomy 398: 1–18 ISSN 2118-9773 https://doi.org/10.5852/ejt.2018.398 www.europeanjournaloftaxonomy.eu 2018 · Atherton S. & Jondelius U. This work is licensed under a Creative Commons Attribution 3.0 License. Research article urn:lsid:zoobank.org:pub:58C075B0-7409-41B7-A6F4-900A5A6BFECE Microstomum (Platyhelminthes, Macrostomorpha, Microstomidae) from the Swedish west coast: two new species and a population description Sarah ATHERTON 1,* & Ulf JONDELIUS 2 1,2 Naturhistoriska riksmuseet, Box 50007, 104 05, Stockholm, Sweden. * Corresponding author: [email protected] 2 Email: [email protected] 1 urn:lsid:zoobank.org:author:1F597997-CD78-4F36-A82B-977B14DCAA6C 2 urn:lsid:zoobank.org:author:7F116C0B-A518-45D6-B62D-0C3B459D5F70 Abstract. Two new species of marine Platyhelminthes, Microstomum laurae sp. nov. and Microstomum edmondi sp. nov. (Macrostomida: Microstomidae) are described from the west coast of Sweden. Microstomum laurae sp. nov. is distinguished by the following combination of characters: rounded anterior and posterior ends; presence of approximately 20 adhesive papillae on the posterior rim; paired lateral red eyespots located level with the brain; preoral gut extending anterior to brain and very small sensory pits. Microstomum edmondi sp. nov. is a protandrous hermaphrodite with a single ovary, single testis and male copulatory organ with stylet. It is characterized by a conical pointed anterior end, a blunt posterior end with numerous adhesive papillae along the rim, and large ciliary pits. The stylet is shaped as a narrow funnel with a short, arched tip. In addition, the first records of fully mature specimens of Microstomum rubromaculatum von Graff, 1882 from Fiskebäckskil and a phylogenetic analysis of Microstomum Schmidt, 1848 based on the mitochondrial cytochrome oxidase I (COI) gene are presented. -
Studies on the Systematics and Biogeography of Terrestrial Flatworms (Platyhelminthes: Tricladida: Terricola) of the Australian Region
ResearchOnline@JCU This file is part of the following reference: Winsor, Leigh (2003) Studies on the systematics and biogeography of terrestrial flatworms (Platyhelminthes: Tricladida: Terricola) of the Australian region. PhD thesis, James Cook University. Access to this file is available from: http://eprints.jcu.edu.au/24134/ The author has certified to JCU that they have made a reasonable effort to gain permission and acknowledge the owner of any third party copyright material included in this document. If you believe that this is not the case, please contact [email protected] and quote http://eprints.jcu.edu.au/24134/ Chapter 5 Systematic Account and Phylogeny ...I don't care much about working with land planarians. There are just too many of them and the older descriptions based primarily on colour are very difficult to apply to pickled specimens. Libbie Hyman in litt to Carl Pantin, early 1950 (letter in the Pantin Collection, Zoology Department, University of Cambridge, access courtesy of Dr Janet Moore) It is curious that so few Australian zoologists have concerned themselves with the study of the Land-Planarians. This is the more to be regretted inasmuch as the opportunities for collecting these animals are rapidly passing away with the clearing of the bush. Moreover, much remains to be done in the investigation of these and other Cryptozoic animals. The Land-Planarians, in particular, still demand thorough comparative anatomical investigation with a view to revising the generic classification. Dendy (1915) 5.1 INTRODUCTION TO THE FAMILIES, SUBFAMILIES & GENERA The classification of the Terricola provided in the Land Planarian Indices of the World (Ogren, Kawakatsu and others), together with the provisional classification of the Australian Geoplanidae (Winsor 1991c), are taken as the starting points for the taxonomy and systematics of the Terricola of the Australian region in this thesis. -
Phylum Platyhelminthes
Author's personal copy Chapter 10 Phylum Platyhelminthes Carolina Noreña Departamento Biodiversidad y Biología Evolutiva, Museo Nacional de Ciencias Naturales (CSIC), Madrid, Spain Cristina Damborenea and Francisco Brusa División Zoología Invertebrados, Museo de La Plata, La Plata, Argentina Chapter Outline Introduction 181 Digestive Tract 192 General Systematic 181 Oral (Mouth Opening) 192 Phylogenetic Relationships 184 Intestine 193 Distribution and Diversity 184 Pharynx 193 Geographical Distribution 184 Osmoregulatory and Excretory Systems 194 Species Diversity and Abundance 186 Reproductive System and Development 194 General Biology 186 Reproductive Organs and Gametes 194 Body Wall, Epidermis, and Sensory Structures 186 Reproductive Types 196 External Epithelial, Basal Membrane, and Cell Development 196 Connections 186 General Ecology and Behavior 197 Cilia 187 Habitat Selection 197 Other Epidermal Structures 188 Food Web Role in the Ecosystem 197 Musculature 188 Ectosymbiosis 198 Parenchyma 188 Physiological Constraints 199 Organization and Structure of the Parenchyma 188 Collecting, Culturing, and Specimen Preparation 199 Cell Types and Musculature of the Parenchyma 189 Collecting 199 Functions of the Parenchyma 190 Culturing 200 Regeneration 190 Specimen Preparation 200 Neural System 191 Acknowledgment 200 Central Nervous System 191 References 200 Sensory Elements 192 INTRODUCTION by a peripheral syncytium with cytoplasmic elongations. Monogenea are normally ectoparasitic on aquatic verte- General Systematic brates, such as fishes,