Insulin Promoted Mobilization of GLUT4 from a Perinuclear Storage Site Requires RAB10
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University of California, San Diego
UNIVERSITY OF CALIFORNIA, SAN DIEGO The post-terminal differentiation fate of RNAs revealed by next-generation sequencing A dissertation submitted in partial satisfaction of the requirements for the degree Doctor of Philosophy in Biomedical Sciences by Gloria Kuo Lefkowitz Committee in Charge: Professor Benjamin D. Yu, Chair Professor Richard Gallo Professor Bruce A. Hamilton Professor Miles F. Wilkinson Professor Eugene Yeo 2012 Copyright Gloria Kuo Lefkowitz, 2012 All rights reserved. The Dissertation of Gloria Kuo Lefkowitz is approved, and it is acceptable in quality and form for publication on microfilm and electronically: __________________________________________________________________ __________________________________________________________________ __________________________________________________________________ __________________________________________________________________ __________________________________________________________________ Chair University of California, San Diego 2012 iii DEDICATION Ma and Ba, for your early indulgence and support. Matt and James, for choosing more practical callings. Roy, my love, for patiently sharing the ups and downs of this journey. iv EPIGRAPH It is foolish to tear one's hair in grief, as though sorrow would be made less by baldness. ~Cicero v TABLE OF CONTENTS Signature Page .............................................................................................................. iii Dedication .................................................................................................................... -
Disruption of Adipose Rab10-Dependent Insulin
Page 1 of 35 Diabetes Vazirani et al. Disruption of Adipose Rab10-Dependent Insulin Signaling Causes Hepatic Insulin Resistance Reema P. Vazirani1, Akanksha Verma2, L. Amanda Sadacca1, Melanie S. Buckman3, Belen Picatoste1, Muheeb Beg1, Christopher Torsitano1, Joanne H. Bruno1, Rajesh T. Patel1, Kotryna Simonyte4, Joao P. Camporez5, Gabriela Moreira5, Domenick J. Falcone6, Domenico Accili7, Olivier Elemento2, Gerald I. Shulman6,8, Barbara B. Kahn4 and Timothy E. McGraw1,3* 1Department of Biochemistry, Weill Cornell Medical College 2Department of Physiology and Biophysics, Weill Cornell Medical College 3Department of Cardiothoracic Surgery, Weill Cornell Medical College 4Beth Israel Deaconess Medical Center, Harvard Medical School 5Departments of Internal Medicine and Cellular & Molecular Physiology, Yale University 6Department of Pathology, Weill Cornell Medical College 7Department of Medicine and Berrie Diabetes Center, Columbia University 8Howard Hughes Medical Institute, Yale University *Contact: Timothy E. McGraw, PhD 1300 York Ave New York, NY 10065 212-746-4982 [email protected] The authors have declared that no conflict of interest exists. 1 Diabetes Publish Ahead of Print, published online March 25, 2016 Diabetes Page 2 of 35 Vazirani et al. Abstract Insulin controls glucose uptake into adipose and muscle cells by regulating the amount of the Glut4 glucose transporter in the plasma membrane. The effect of insulin is to promote translocation of intracellular Glut4 to the plasma membrane. The small Rab GTPase Rab10 is required for insulin-stimulated Glut4 translocation in cultured 3T3-L1 adipocytes. Here we demonstrate that both insulin-stimulated glucose uptake and Glut4 translocation to the plasma membrane are reduced by about half in adipocytes from adipose-specific Rab10 knockout mice. -
Roles of TBC1D1 and TBC1D4 in Insulin- and Exercise-Stimulated Glucose Transport of Skeletal Muscle
Diabetologia (2015) 58:19–30 DOI 10.1007/s00125-014-3395-5 REVIEW Roles of TBC1D1 and TBC1D4 in insulin- and exercise-stimulated glucose transport of skeletal muscle Gregory D. Cartee Received: 30 June 2014 /Accepted: 7 August 2014 /Published online: 4 October 2014 # Springer-Verlag Berlin Heidelberg 2014 Abstract This review focuses on two paralogue Rab GTPase mechanism for greater TBC1D4 phosphorylation in insulin- activating proteins known as TBC1D1 Tre-2/BUB2/cdc 1 stimulated muscles after acute exercise is uncertain, and a domain family (TBC1D) 1 and TBC1D4 (also called Akt causal link between enhanced TBC1D4 phosphorylation and Substrate of 160 kDa, AS160) and their roles in controlling increased post-exercise insulin sensitivity has yet to be skeletal muscle glucose transport in response to the indepen- established. In summary, TBC1D1 and TBC1D4 have impor- dent and combined effects of insulin and exercise. Convincing tant, but distinct roles in regulating muscle glucose transport evidence implicates Akt2-dependent TBC1D4 phosphoryla- in response to insulin and exercise. tion on T642 as a key part of the mechanism for insulin- stimulated glucose uptake by skeletal muscle. TBC1D1 phos- Keywords Akt substrate of 160 kDa . Diabetes . Glucose phorylation on several insulin-responsive sites (including transport .High-fatdiet .Insulinresistance .Obesity .Physical T596, a site corresponding to T642 in TBC1D4) does not activity . Review appear to be essential for in vivo insulin-stimulated glucose uptake by skeletal muscle. In vivo exercise or ex vivo con- Abbreviations traction of muscle result in greater TBC1D1 phosphorylation AMPK 5' AMP-activated kinase on S237 that is likely to be secondary to increased AMP- APPL2 Adaptor protein containing PH domain, activated protein kinase activity and potentially important for PTB domain and leucine zipper motif 2 contraction-stimulated glucose uptake. -
Detecting Novel Effects of Exercise Or AMPK Activation in Human Skeletal Muscle
From the Department of Molecular Medicine and Surgery Karolinska Institutet, Stockholm, Sweden Detecting Novel Effects of Exercise or AMPK Activation in Human Skeletal Muscle David Gray Lassiter Stockholm 2018 All previously published papers were reproduced with permission from the publisher. Published by Karolinska Institutet. Printed by Eprint AB 2018 © David Gray Lassiter, 2018 ISBN 978-91-7831-010-4 Detecting Novel Effects of Exercise or AMPK Activation in Human Skeletal Muscle THESIS FOR DOCTORAL DEGREE (Ph.D.) By David Gray Lassiter Principal Supervisor: Opponent: Juleen Zierath Professor Bret Goodpaster Karolinska Institutet Sanford Burnham Prebys-Medical Discovery Department of Molecular Medicine and Surgery Institute Co-supervisor(s): Examination Board: Anna Krook Professor Anders Arner Karolinska Institutet Karolinska Institutet Department of Physiology and Pharmacology Professor Ewa Ehrenborg Karolinska Institutet Professor Niels Jessen Aarhus University ABSTRACT Cardiovascular and metabolic disorders are among the main causes of death today. Regular exercise can prevent and treat these chronic diseases. A molecule at the center of exercise adaptations in skeletal muscle is adenosine monophosphate-activated protein kinase (AMPK). Rapid energy turnover in cells, such as during contraction in skeletal muscle, activates AMPK. The activation of AMPK leads to inhibition of anabolic processes that consume energy and upregulation of catabolic processes that generate energy. AMPK activation increases glucose uptake into peripheral tissues. Even insulin-resistant individuals, including type 2 diabetes patients, retain the blood-glucose lowering effect of AMPK activation. There is a need to better understand how exercise provides protective benefits, and how AMPK functions at the cellular level. This thesis consists of three research papers wherein exercise and AMPK activation were used as experimental models to identify novel effects of these signals in human skeletal muscle. -
Investigation Into the Effect of LRRK2-Rab10 Protein Interactions on the Proboscis Extension Response of the Fruit Fly Drosophila Melanogaster
Investigation into the effect of LRRK2-Rab10 protein interactions on the Proboscis Extension Response of the fruit fly Drosophila melanogaster Laura Covill Masters by Research University of York Biology December 2018 Abstract Parkinson’s Disease (PD) is a debilitating disease which affects 1% of the population worldwide and is characterised by stiffness, tremor and bradykinesia. PD is a complex disease with many suspected genetic and environmental causes, and it is critical to understand all the pathways involved in disease progression to develop effective therapies for PD, which currently has no cure. A kinase- coding gene, LRRK2 has emerged as a focal point for much PD research, particularly PD-associated SNP LRRK2-G2019S, which leads to LRRK2 overactivity. Rab proteins, a series of small GTPases, have been identified among the proteins phosphorylated by LRRK2. These interactions may be modelled in the fruit fly Drosophila melanogaster. Using optogenetics in the fly, this project investigates the relationship between the LRRK2-G2019S and Rab10 interaction, and the speed and degree of tremor of Proboscis Extension Response (PER) by triggering a PER in fly lines of different genotypes. Significant bradykinesia in Rab10 null flies which was not recreated in flies with dopaminergic neuron Rab10RNAi suggests that the bradykinesia PER phenotype is caused by off-target effect of Rab10-KO in another tissue of the fly than the dopaminergic neurons. Over-expression of Rab10 in dopaminergic neurons of flies also expressing LRRK2-G2019S produced -
Open Data for Differential Network Analysis in Glioma
International Journal of Molecular Sciences Article Open Data for Differential Network Analysis in Glioma , Claire Jean-Quartier * y , Fleur Jeanquartier y and Andreas Holzinger Holzinger Group HCI-KDD, Institute for Medical Informatics, Statistics and Documentation, Medical University Graz, Auenbruggerplatz 2/V, 8036 Graz, Austria; [email protected] (F.J.); [email protected] (A.H.) * Correspondence: [email protected] These authors contributed equally to this work. y Received: 27 October 2019; Accepted: 3 January 2020; Published: 15 January 2020 Abstract: The complexity of cancer diseases demands bioinformatic techniques and translational research based on big data and personalized medicine. Open data enables researchers to accelerate cancer studies, save resources and foster collaboration. Several tools and programming approaches are available for analyzing data, including annotation, clustering, comparison and extrapolation, merging, enrichment, functional association and statistics. We exploit openly available data via cancer gene expression analysis, we apply refinement as well as enrichment analysis via gene ontology and conclude with graph-based visualization of involved protein interaction networks as a basis for signaling. The different databases allowed for the construction of huge networks or specified ones consisting of high-confidence interactions only. Several genes associated to glioma were isolated via a network analysis from top hub nodes as well as from an outlier analysis. The latter approach highlights a mitogen-activated protein kinase next to a member of histondeacetylases and a protein phosphatase as genes uncommonly associated with glioma. Cluster analysis from top hub nodes lists several identified glioma-associated gene products to function within protein complexes, including epidermal growth factors as well as cell cycle proteins or RAS proto-oncogenes. -
Genome-Wide Association and Gene Enrichment Analyses of Meat Sensory Traits in a Crossbred Brahman-Angus
Proceedings of the World Congress on Genetics Applied to Livestock Production, 11. 124 Genome-wide association and gene enrichment analyses of meat tenderness in an Angus-Brahman cattle population J.D. Leal-Gutíerrez1, M.A. Elzo1, D. Johnson1 & R.G. Mateescu1 1 University of Florida, Department of Animal Sciences, 2250 Shealy Dr, 32608 Gainesville, Florida, United States. [email protected] Summary The objective of this study was to identify genomic regions associated with meat tenderness related traits using a whole-genome scan approach followed by a gene enrichment analysis. Warner-Bratzler shear force (WBSF) was measured on 673 steaks, and tenderness and connective tissue were assessed by a sensory panel on 496 steaks. Animals belong to the multibreed Angus-Brahman herd from University of Florida and range from 100% Angus to 100% Brahman. All animals were genotyped with the Bovine GGP F250 array. Gene enrichment was identified in two pathways; the first pathway is involved in negative regulation of transcription from RNA polymerase II, and the second pathway groups several cellular component of the endoplasmic reticulum membrane. Keywords: tenderness, gene enrichment, regulation of transcription, cell growth, cell proliferation Introduction Identification of quantitative trait loci (QTL) for any complex trait, including meat tenderness, is the first most important step in the process of understanding the genetic architecture underlying the phenotype. Given a large enough population and a dense coverage of the genome, a genome-wide association study (GWAS) is usually successful in uncovering major genes and QTLs with large and medium effect on these type of traits. Several GWA studies on Bos indicus (Magalhães et al., 2016; Tizioto et al., 2013) or crossbred beef cattle breeds (Bolormaa et al., 2011b; Hulsman Hanna et al., 2014; Lu et al., 2013) were successful at identifying QTL for meat tenderness; and most of them include the traditional candidate genes µ-calpain and calpastatin. -
Chemical Denervation Using Botulinum Toxin Increases Akt Expression and Reduces Submaximal Insulin-Stimulated Glucose Transport in Mouse Muscle T
Cellular Signalling 53 (2019) 224–233 Contents lists available at ScienceDirect Cellular Signalling journal homepage: www.elsevier.com/locate/cellsig Chemical denervation using botulinum toxin increases Akt expression and reduces submaximal insulin-stimulated glucose transport in mouse muscle T Zhencheng Lia,1, Lui Näslund-Kocha,b,1, Carlos Henriquez-Olguina, Jonas R. Knudsena, Jingwen Lia, Agnete B. Madsena, Satoru Atod, Jacob Wieneckec, Riki Ogasawarad, ⁎ Jens B. Nielsenb, Thomas E. Jensena, a Section of Molecular Physiology, Department of Nutrition, Exercise and Sports, University of Copenhagen, Denmark b Neural Control of Movement Research Group, Department of Neuroscience, University of Copenhagen, Copenhagen, Denmark c Section of Integrated Physiology, Department of Nutrition, Exercise and Sports, University of Copenhagen, Denmark d Nagoya Institute of Technology, Nagoya, Japan ARTICLE INFO ABSTRACT Keywords: Botulinum toxin A (botox) is a toxin used for spasticity treatment and cosmetic purposes. Botox blocks the Atrophy excitation of skeletal muscle fibers by preventing the release of acetylcholine from motor nerves, a process GLUT4 termed chemical denervation. Surgical denervation is associated with increased expression of the canonical Hexokinase insulin-activated kinase Akt, lower expression of glucose handling proteins GLUT4 and hexokinase II (HKII) and TBC1D4 insulin resistant glucose uptake, but it is not known if botox has a similar effect. To test this, we performed a Insulin signaling time-course study using supra-maximal insulin-stimulation in mouse soleus ex vivo. No effect was observed in the glucose transport responsiveness at day 1, 7 and 21 after intramuscular botox injection, despite lower ex- pression of GLUT4, HKII and expression and phosphorylation of TBC1D4. -
Bioinformatics Analysis to Screen Key Genes in Papillary Thyroid Carcinoma
ONCOLOGY LETTERS 19: 195-204, 2020 Bioinformatics analysis to screen key genes in papillary thyroid carcinoma YUANHU LIU1*, SHUWEI GAO2*, YAQIONG JIN2, YERAN YANG2, JUN TAI1, SHENGCAI WANG1, HUI YANG2, PING CHU2, SHUJING HAN2, JIE LU2, XIN NI1,2, YONGBO YU2 and YONGLI GUO2 1Department of Otolaryngology, Head and Neck Surgery, Beijing Children's Hospital, Capital Medical University, National Center for Children's Health; 2Beijing Key Laboratory for Pediatric Diseases of Otolaryngology, Head and Neck Surgery, MOE Key Laboratory of Major Diseases in Children, Beijing Pediatric Research Institute, Beijing Children's Hospital, Capital Medical University, National Center for Children's Health, Beijing 100045, P.R. China Received April 22, 2019; Accepted September 24, 2019 DOI: 10.3892/ol.2019.11100 Abstract. Papillary thyroid carcinoma (PTC) is the most verifying their potential for clinical diagnosis. Taken together, common type of thyroid carcinoma, and its incidence has the findings of the present study suggest that these genes and been on the increase in recent years. However, the molecular related pathways are involved in key events of PTC progression mechanism of PTC is unclear and misdiagnosis remains a and facilitate the identification of prognostic biomarkers. major issue. Therefore, the present study aimed to investigate this mechanism, and to identify key prognostic biomarkers. Introduction Integrated analysis was used to explore differentially expressed genes (DEGs) between PTC and healthy thyroid tissue. To Thyroid carcinoma is the most common malignancy of investigate the functions and pathways associated with DEGs, the head and neck, and accounts for 91.5% of all endocrine Gene Ontology, pathway and protein-protein interaction (PPI) malignancies (1). -
ADHD) Gene Networks in Children of Both African American and European American Ancestry
G C A T T A C G G C A T genes Article Rare Recurrent Variants in Noncoding Regions Impact Attention-Deficit Hyperactivity Disorder (ADHD) Gene Networks in Children of both African American and European American Ancestry Yichuan Liu 1 , Xiao Chang 1, Hui-Qi Qu 1 , Lifeng Tian 1 , Joseph Glessner 1, Jingchun Qu 1, Dong Li 1, Haijun Qiu 1, Patrick Sleiman 1,2 and Hakon Hakonarson 1,2,3,* 1 Center for Applied Genomics, Children’s Hospital of Philadelphia, Philadelphia, PA 19104, USA; [email protected] (Y.L.); [email protected] (X.C.); [email protected] (H.-Q.Q.); [email protected] (L.T.); [email protected] (J.G.); [email protected] (J.Q.); [email protected] (D.L.); [email protected] (H.Q.); [email protected] (P.S.) 2 Division of Human Genetics, Department of Pediatrics, The Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA 3 Department of Human Genetics, Children’s Hospital of Philadelphia, Philadelphia, PA 19104, USA * Correspondence: [email protected]; Tel.: +1-267-426-0088 Abstract: Attention-deficit hyperactivity disorder (ADHD) is a neurodevelopmental disorder with poorly understood molecular mechanisms that results in significant impairment in children. In this study, we sought to assess the role of rare recurrent variants in non-European populations and outside of coding regions. We generated whole genome sequence (WGS) data on 875 individuals, Citation: Liu, Y.; Chang, X.; Qu, including 205 ADHD cases and 670 non-ADHD controls. The cases included 116 African Americans H.-Q.; Tian, L.; Glessner, J.; Qu, J.; Li, (AA) and 89 European Americans (EA), and the controls included 408 AA and 262 EA. -
Linkage, Whole Genome Sequence, and Biological Data Implicate Variants in RAB10 in Alzheimer’S Disease Resilience Perry G
Ridge et al. Genome Medicine (2017) 9:100 DOI 10.1186/s13073-017-0486-1 RESEARCH Open Access Linkage, whole genome sequence, and biological data implicate variants in RAB10 in Alzheimer’s disease resilience Perry G. Ridge1†, Celeste M. Karch2†, Simon Hsu2, Ivan Arano1, Craig C. Teerlink3, Mark T. W. Ebbert1,4, Josue D. Gonzalez Murcia1, James M. Farnham3, Anna R. Damato2, Mariet Allen5, Xue Wang6, Oscar Harari2, Victoria M. Fernandez2, Rita Guerreiro7, Jose Bras7, John Hardy7, Ronald Munger8, Maria Norton9, Celeste Sassi7,10, Andrew Singleton10, Steven G. Younkin5, Dennis W. Dickson5, Todd E. Golde11, Nathan D. Price12, Nilüfer Ertekin-Taner13, Carlos Cruchaga2, Alison M. Goate14, Christopher Corcoran15, JoAnn Tschanz16, Lisa A. Cannon-Albright3,17, John S. K. Kauwe18* and for the Alzheimer’s Disease Neuroimaging Initative Abstract Background: While age and the APOE ε4 allele are major risk factors for Alzheimer’s disease (AD), a small percentage of individuals with these risk factors exhibit AD resilience by living well beyond 75 years of age without any clinical symptoms of cognitive decline. Methods: We used over 200 “AD resilient” individuals and an innovative, pedigree-based approach to identify genetic variants that segregate with AD resilience. First, we performed linkage analyses in pedigrees with resilient individuals and a statistical excess of AD deaths. Second, we used whole genome sequences to identify candidate SNPs in significant linkage regions. Third, we replicated SNPs from the linkage peaks that reduced risk for AD in an independent dataset and in a gene-based test. Finally, we experimentally characterized replicated SNPs. Results: Rs142787485 in RAB10 confers significant protection against AD (p value = 0.0184, odds ratio = 0.5853). -
The Rabgaps TBC1D1 and TBC1D4 Control Uptake of Long-Chain Fatty
Diabetes Page 2 of 39 1 The RabGAPs TBC1D1 and TBC1D4 control uptake of long-chain fatty 2 acids into skeletal muscle via fatty acid transporter SLC27A4/FATP4 3 Short title: RabGAPs in skeletal muscle lipid metabolism 4 Tim Benninghoff1,2, Lena Espelage1,2, Samaneh Eickelschulte1,2, Isabel Zeinert1, Isabelle 5 Sinowenka1, Frank Müller1, Christina Schöndeling1, Hannah Batchelor1, Sandra Cames1,2, 6 Zhou Zhou1, Jörg Kotzka1,2, Alexandra Chadt §1,2 and Hadi Al-Hasani1,2 7 8 1Institute for Clinical Biochemistry and Pathobiochemistry, German Diabetes Center, Leibniz 9 Center for Diabetes Research at Heinrich Heine University Duesseldorf 10 2German Center for Diabetes Research, München-Neuherberg, Germany. 11 12 § Corresponding author 13 Dr. Alexandra Chadt 14 Institute for Clinical Biochemistry and Pathobiochemistry 15 German Diabetes Center, Leibniz Center for Diabetes Research at Heinrich Heine University 16 Duesseldorf 17 Auf'm Hennekamp 65 18 40225 Duesseldorf 19 Germany 20 tel/fax +49-211-3382-577/ -430 21 [email protected] 22 23 Word count: 4946 (Introduction, Methods, Results, Discussion) 24 Figures: 5 25 Tables: 0 1 Diabetes Publish Ahead of Print, published online August 31, 2020 Page 3 of 39 Diabetes 26 Abstract 27 The two closely related RabGTPase-activating proteins (RabGAPs) TBC1D1 and TBC1D4 28 play a crucial role in the regulation of GLUT4 translocation in response to insulin and 29 contraction in skeletal muscle. In mice, deficiency in one or both RabGAPs leads to reduced 30 insulin and contraction-stimulated glucose uptake, and to elevated fatty acid uptake and 31 oxidation in both glycolytic and oxidative muscle fibers without altering mitochondrial copy 32 number and the abundance of OXPHOS proteins.