<I>Coriolopsis Psila</I>
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Downstream Process Development for Small Scale Purification Of
WestminsterResearch http://www.westminster.ac.uk/westminsterresearch Enhanced large-scale production of laccases from Coriolopsis polyzona for use in dye bioremediation Tingting Cui School of Life Sciences This is an electronic version of a PhD thesis awarded by the University of Westminster. © The Author, 2009. This is an exact reproduction of the paper copy held by the University of Westminster library. The WestminsterResearch online digital archive at the University of Westminster aims to make the research output of the University available to a wider audience. Copyright and Moral Rights remain with the authors and/or copyright owners. Users are permitted to download and/or print one copy for non-commercial private study or research. Further distribution and any use of material from within this archive for profit-making enterprises or for commercial gain is strictly forbidden. Whilst further distribution of specific materials from within this archive is forbidden, you may freely distribute the URL of WestminsterResearch: (http://westminsterresearch.wmin.ac.uk/). In case of abuse or copyright appearing without permission e-mail [email protected] ENHANCED LARGE-SCALE PRODUCTION OF LACCASES FROM CORIOLOPSIS POLYZONA FOR USE IN DYE BIOREMEDIATION Tingting Cui A thesis submitted to University of Westminster in fulfilment of the requirements for the degree of Doctor of Philosophy School of Biociences University of Westminster London W1W 6UW United Kingdom MAY 2009 ABSTRACT Pollution from synthetic dyes, released by textile and paper pulping plants, draws major concern. Textile effluents have negative impact both on the environment and human health because they are toxic and some are carcinogenic. Apart from the textile industry, dyes are also widely used in manufacturing industries for leather products, cosmetics, pharmaceuticals, foods and beverages. -
Phylogenetic Classification of Trametes
TAXON 60 (6) • December 2011: 1567–1583 Justo & Hibbett • Phylogenetic classification of Trametes SYSTEMATICS AND PHYLOGENY Phylogenetic classification of Trametes (Basidiomycota, Polyporales) based on a five-marker dataset Alfredo Justo & David S. Hibbett Clark University, Biology Department, 950 Main St., Worcester, Massachusetts 01610, U.S.A. Author for correspondence: Alfredo Justo, [email protected] Abstract: The phylogeny of Trametes and related genera was studied using molecular data from ribosomal markers (nLSU, ITS) and protein-coding genes (RPB1, RPB2, TEF1-alpha) and consequences for the taxonomy and nomenclature of this group were considered. Separate datasets with rDNA data only, single datasets for each of the protein-coding genes, and a combined five-marker dataset were analyzed. Molecular analyses recover a strongly supported trametoid clade that includes most of Trametes species (including the type T. suaveolens, the T. versicolor group, and mainly tropical species such as T. maxima and T. cubensis) together with species of Lenzites and Pycnoporus and Coriolopsis polyzona. Our data confirm the positions of Trametes cervina (= Trametopsis cervina) in the phlebioid clade and of Trametes trogii (= Coriolopsis trogii) outside the trametoid clade, closely related to Coriolopsis gallica. The genus Coriolopsis, as currently defined, is polyphyletic, with the type species as part of the trametoid clade and at least two additional lineages occurring in the core polyporoid clade. In view of these results the use of a single generic name (Trametes) for the trametoid clade is considered to be the best taxonomic and nomenclatural option as the morphological concept of Trametes would remain almost unchanged, few new nomenclatural combinations would be necessary, and the classification of additional species (i.e., not yet described and/or sampled for mo- lecular data) in Trametes based on morphological characters alone will still be possible. -
(12) Patent Application Publication (10) Pub. No.: US 2009/0005340 A1 Kristiansen (43) Pub
US 20090005340A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2009/0005340 A1 Kristiansen (43) Pub. Date: Jan. 1, 2009 54) BOACTIVE AGENTS PRODUCED BY 3O Foreigngn AppApplication PrioritVty Data SUBMERGED CULTIVATION OFA BASDOMYCETE CELL Jun. 15, 2005 (DK) ........................... PA 2005 OO881 Jan. 25, 2006 (DK)........................... PA 2006 OO115 (75) Inventor: Bjorn Kristiansen, Frederikstad Publication Classification (NO)NO (51) Int. Cl. Correspondence Address: A 6LX 3L/75 (2006.01) BROWDY AND NEIMARK, P.L.L.C. CI2P I/02 (2006.01) 624 NINTH STREET, NW A6IP37/00 (2006.01) SUTE 300 CI2P 19/04 (2006.01) WASHINGTON, DC 20001-5303 (US) (52) U.S. Cl. ............................ 514/54:435/171; 435/101 (57) ABSTRACT (73) Assignee: MediMush A/S, Horsholm (DK) - The invention in one aspect is directed to a method for culti (21) Appl. No.: 11/917,516 Vating a Basidiomycete cell in liquid culture medium, said method comprising the steps of providing a Basidiomycete (22) PCT Filed: Jun. 14, 2006 cell capable of being cultivated in a liquid growth medium, e - rs and cultivating the Basidiomycete cell under conditions (86). PCT No.: PCT/DK2OO6/OOO340 resulting in the production intracellularly or extracellularly of one or more bioactive agent(s) selected from the group con S371 (c)(1) sisting of oligosaccharides, polysaccharides, optionally gly (2), (4) Date: Ul. 31, 2008 cosylated peptides or polypeptides, oligonucleotides, poly s e a v-9 nucleotides, lipids, fatty acids, fatty acid esters, secondary O O metabolites Such as polyketides, terpenes, steroids, shikimic Related U.S. Application Data acids, alkaloids and benzodiazepine, wherein said bioactive (60) Provisional application No. -
The Good, the Bad and the Tasty: the Many Roles of Mushrooms
available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 85: 125–157. The good, the bad and the tasty: The many roles of mushrooms K.M.J. de Mattos-Shipley1,2, K.L. Ford1, F. Alberti1,3, A.M. Banks1,4, A.M. Bailey1, and G.D. Foster1* 1School of Biological Sciences, Life Sciences Building, University of Bristol, 24 Tyndall Avenue, Bristol, BS8 1TQ, UK; 2School of Chemistry, University of Bristol, Cantock's Close, Bristol, BS8 1TS, UK; 3School of Life Sciences and Department of Chemistry, University of Warwick, Gibbet Hill Road, Coventry, CV4 7AL, UK; 4School of Biology, Devonshire Building, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK *Correspondence: G.D. Foster, [email protected] Abstract: Fungi are often inconspicuous in nature and this means it is all too easy to overlook their importance. Often referred to as the “Forgotten Kingdom”, fungi are key components of life on this planet. The phylum Basidiomycota, considered to contain the most complex and evolutionarily advanced members of this Kingdom, includes some of the most iconic fungal species such as the gilled mushrooms, puffballs and bracket fungi. Basidiomycetes inhabit a wide range of ecological niches, carrying out vital ecosystem roles, particularly in carbon cycling and as symbiotic partners with a range of other organisms. Specifically in the context of human use, the basidiomycetes are a highly valuable food source and are increasingly medicinally important. In this review, seven main categories, or ‘roles’, for basidiomycetes have been suggested by the authors: as model species, edible species, toxic species, medicinal basidiomycetes, symbionts, decomposers and pathogens, and two species have been chosen as representatives of each category. -
Chemical Compounds from the Kenyan Polypore Trametes Elegans (Spreng:Fr.) Fr (Polyporaceae) and Their Antimicrobial Activity
Available online at http://www.ifgdg.org Int. J. Biol. Chem. Sci. 13(4): 2352-2359, August 2019 ISSN 1997-342X (Online), ISSN 1991-8631 (Print) Original Paper http://ajol.info/index.php/ijbcs http://indexmedicus.afro.who.int Chemical compounds from the Kenyan polypore Trametes elegans (Spreng:Fr.) Fr (Polyporaceae) and their antimicrobial activity Regina Kemunto MAYAKA1, Moses Kiprotich LANGAT2, Alice Wanjiku NJUE1, Peter Kiplagat CHEPLOGOI1 and Josiah Ouma OMOLO1* 1Department of Chemistry, Egerton University, P.O Box 536-20115 Njoro, Kenya. 2Natural Product Chemistry in the Chemical Ecology and In Vitro Group at the Jodrell Laboratory, Kew, Richmond, UK. *Corresponding author; E-mail: [email protected]. ACKNOWLEDGEMENTS The authors are grateful to the Kenya National Research Fund (NRF)-NACOSTI for the financial assistance for the present work. ABSTRACT Over the years, natural products have been used by humans in tackling infectious bacteria and fungi. Higher fungi have potential of containing natural product agents for various diseases. The aim of the study was to characterise the antimicrobial compounds from the polypore Trametes elegans. The dried, ground fruiting bodies of T. elegans were extracted with methanol and solvent removed in a rotary evaporator. The extract was suspended in distilled water, then partitioned using ethyl acetate solvent to obtain an ethyl acetate extract. The extract was fractionated and purified using column chromatographic method and further purification on sephadex LH20. The chemical structures were determined on the basis of NMR spectroscopic data from 1H and 13C NMR, HSQC, HMBC, 1H-1H COSY, and NOESY experiments. Antimicrobial activity against clinically important bacterial and fungal strains was assessed and zones of inhibition were recorded. -
New Records of Polypores from Iran, with a Checklist of Polypores for Gilan Province
CZECH MYCOLOGY 68(2): 139–148, SEPTEMBER 27, 2016 (ONLINE VERSION, ISSN 1805-1421) New records of polypores from Iran, with a checklist of polypores for Gilan Province 1 2 MOHAMMAD AMOOPOUR ,MASOOMEH GHOBAD-NEJHAD *, 1 SEYED AKBAR KHODAPARAST 1 Department of Plant Protection, Faculty of Agricultural Sciences, University of Gilan, P.O. Box 41635-1314, Rasht 4188958643, Iran. 2 Department of Biotechnology, Iranian Research Organization for Science and Technology (IROST), P.O. Box 3353-5111, Tehran 3353136846, Iran; [email protected] *corresponding author Amoopour M., Ghobad-Nejhad M., Khodaparast S.A. (2016): New records of polypores from Iran, with a checklist of polypores for Gilan Province. – Czech Mycol. 68(2): 139–148. As a result of a survey of poroid basidiomycetes in Gilan Province, Antrodiella fragrans, Ceriporia aurantiocarnescens, Oligoporus tephroleucus, Polyporus udus,andTyromyces kmetii are newly reported from Iran, and the following seven species are reported as new to this province: Coriolopsis gallica, Fomitiporia punctata, Hapalopilus nidulans, Inonotus cuticularis, Oligo- porus hibernicus, Phylloporia ribis,andPolyporus tuberaster. An updated checklist of polypores for Gilan Province is provided. Altogether, 66 polypores are known from Gilan up to now. Key words: fungi, hyrcanian forests, poroid basidiomycetes. Article history: received 28 July 2016, revised 13 September 2016, accepted 14 September 2016, published online 27 September 2016. Amoopour M., Ghobad-Nejhad M., Khodaparast S.A. (2016): Nové nálezy chorošů pro Írán a checklist chorošů provincie Gilan. – Czech Mycol. 68(2): 139–148. Jako výsledek systematického výzkumu chorošotvarých hub v provincii Gilan jsou publikovány nové druhy pro Írán: Antrodiella fragrans, Ceriporia aurantiocarnescens, Oligoporus tephroleu- cus, Polyporus udus a Tyromyces kmetii. -
Re-Thinking the Classification of Corticioid Fungi
mycological research 111 (2007) 1040–1063 journal homepage: www.elsevier.com/locate/mycres Re-thinking the classification of corticioid fungi Karl-Henrik LARSSON Go¨teborg University, Department of Plant and Environmental Sciences, Box 461, SE 405 30 Go¨teborg, Sweden article info abstract Article history: Corticioid fungi are basidiomycetes with effused basidiomata, a smooth, merulioid or Received 30 November 2005 hydnoid hymenophore, and holobasidia. These fungi used to be classified as a single Received in revised form family, Corticiaceae, but molecular phylogenetic analyses have shown that corticioid fungi 29 June 2007 are distributed among all major clades within Agaricomycetes. There is a relative consensus Accepted 7 August 2007 concerning the higher order classification of basidiomycetes down to order. This paper Published online 16 August 2007 presents a phylogenetic classification for corticioid fungi at the family level. Fifty putative Corresponding Editor: families were identified from published phylogenies and preliminary analyses of unpub- Scott LaGreca lished sequence data. A dataset with 178 terminal taxa was compiled and subjected to phy- logenetic analyses using MP and Bayesian inference. From the analyses, 41 strongly Keywords: supported and three unsupported clades were identified. These clades are treated as fam- Agaricomycetes ilies in a Linnean hierarchical classification and each family is briefly described. Three ad- Basidiomycota ditional families not covered by the phylogenetic analyses are also included in the Molecular systematics classification. All accepted corticioid genera are either referred to one of the families or Phylogeny listed as incertae sedis. Taxonomy ª 2007 The British Mycological Society. Published by Elsevier Ltd. All rights reserved. Introduction develop a downward-facing basidioma. -
Acta Botanica Brasilica - 31(4): 566-570
Acta Botanica Brasilica - 31(4): 566-570. October-December 2017. doi: 10.1590/0102-33062017abb0130 Host-exclusivity and host-recurrence by wood decay fungi (Basidiomycota - Agaricomycetes) in Brazilian mangroves Georgea S. Nogueira-Melo1*, Paulo J. P. Santos 2 and Tatiana B. Gibertoni1 Received: April 7, 2017 Accepted: May 9, 2017 . ABSTRACT Th is study aimed to investigate for the fi rst time the ecological interactions between species of Agaricomycetes and their host plants in Brazilian mangroves. Th irty-two fi eld trips were undertaken to four mangroves in the state of Pernambuco, Brazil, from April 2009 to March 2010. One 250 x 40 m stand was delimited in each mangrove and six categories of substrates were artifi cially established: living Avicennia schaueriana (LA), dead A. schaueriana (DA), living Rhizophora mangle (LR), dead R. mangle (DR), living Laguncularia racemosa (LL) and dead L. racemosa (DL). Th irty-three species of Agaricomycetes were collected, 13 of which had more than fi ve reports and so were used in statistical analyses. Twelve species showed signifi cant values for fungal-plant interaction: one of them was host- exclusive in DR, while fi ve were host-recurrent on A. schauerianna; six occurred more in dead substrates, regardless the host species. Overall, the results were as expected for environments with low plant species richness, and where specifi city, exclusivity and/or recurrence are more easily seen. However, to properly evaluate these relationships, mangrove ecosystems cannot be considered homogeneous since they can possess diff erent plant communities, and thus diff erent types of fungal-plant interactions. Keywords: Fungi, estuaries, host-fungi interaction, host-relationships, plant-fungi interaction Hyde (2001) proposed a redefi nition of these terms. -
Polypore Diversity in North America with an Annotated Checklist
Mycol Progress (2016) 15:771–790 DOI 10.1007/s11557-016-1207-7 ORIGINAL ARTICLE Polypore diversity in North America with an annotated checklist Li-Wei Zhou1 & Karen K. Nakasone2 & Harold H. Burdsall Jr.2 & James Ginns3 & Josef Vlasák4 & Otto Miettinen5 & Viacheslav Spirin5 & Tuomo Niemelä 5 & Hai-Sheng Yuan1 & Shuang-Hui He6 & Bao-Kai Cui6 & Jia-Hui Xing6 & Yu-Cheng Dai6 Received: 20 May 2016 /Accepted: 9 June 2016 /Published online: 30 June 2016 # German Mycological Society and Springer-Verlag Berlin Heidelberg 2016 Abstract Profound changes to the taxonomy and classifica- 11 orders, while six other species from three genera have tion of polypores have occurred since the advent of molecular uncertain taxonomic position at the order level. Three orders, phylogenetics in the 1990s. The last major monograph of viz. Polyporales, Hymenochaetales and Russulales, accom- North American polypores was published by Gilbertson and modate most of polypore species (93.7 %) and genera Ryvarden in 1986–1987. In the intervening 30 years, new (88.8 %). We hope that this updated checklist will inspire species, new combinations, and new records of polypores future studies in the polypore mycota of North America and were reported from North America. As a result, an updated contribute to the diversity and systematics of polypores checklist of North American polypores is needed to reflect the worldwide. polypore diversity in there. We recognize 492 species of polypores from 146 genera in North America. Of these, 232 Keywords Basidiomycota . Phylogeny . Taxonomy . species are unchanged from Gilbertson and Ryvarden’smono- Wood-decaying fungus graph, and 175 species required name or authority changes. -
Spor E Pr I N Ts
SPOR E PR I N TS BULLETIN OF THE PUGET SOUND MYCOLOGICAL SOCIETY Number 503 June 2014 WOULD A ROSY GOMPHIDIUS BY ANY OTHER NAME SMELL AS SWEET? Rebellion against dual-naming system gains Many fungi are shape-shifters seemingly designed momentum but still faces a few hurdles to defy human efforts at categorization. The same species, sometimes the same individual, can reproduce by Susan Milius two ways: sexually, by mixing genes with a partner of Science News April 18, 2014 the same species, or asexually, by cloning to produce To a visitor walking down, down, down the white genetically identical offspring. cinder block stairwell and through metal doors into the The problem is that reproductive modes can take basement, Building 010A takes on the hushed, mile- entirely different anatomical forms. A species that long-beige-corridor feel of some secret government looks like a miniature corn dog when it is reproducing installation in a blockbuster movie. sexually might look like fuzzy white twigs when it is in Biologist Shannon Dominick wears a striped sweater cloning mode. A gray smudge on a sunflower seed head as she strolls through this Fort Knox of fungus, merrily might just be the asexually reproducing counterpart of discussing certain specimens in the vaults that are a tiny satellite dish-shaped thing. commonly called “dog vomit fungi.” When many of these pairs were discovered, sometimes This basement on the campus of the Agricultural decades apart, sometimes growing right next to each Research Service in Beltsville, Md., holds the second other, it was difficult or impossible to demonstrate that largest fungus collection in the world, with at least one they were the same thing. -
Molecular Evaluation of Species Delimitation and Barcoding of Daedaleopsis Confragosa Specimens in Austria
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Österreichische Zeitschrift für Pilzkunde Jahr/Year: 2015 Band/Volume: 24 Autor(en)/Author(s): Mentrida Sonia, Krisai-Greilhuber Irmgard, Voglmayr Hermann Artikel/Article: Molecular evaluation of species delimitation and barcoding of Daedaleopsis confragosa specimens in Austria. 173-179 Österr. Z. Pilzk. 24 (2015) – Austrian J. Mycol. 24 (2015) 173 Molecular evaluation of species delimitation and barcoding of Daedaleopsis confragosa specimens in Austria SONIA MENTRIDA IRMGARD KRISAI-GREILHUBER HERMANN VOGLMAYR Department of Botany and Biodiversity research University of Vienna Rennweg 14 1030 Wien, Austria Email: [email protected] Accepted 25. November 2015 Key words: Polypores, Daedaleopsis, Polyporaceae. – ITS rDNA, species boundary, systematics. – Mycobiota of Austria. Abstract: Herbarium material of Daedaleopsis confragosa, D. tricolor and D. nitida collected in dif- ferent regions of Austria, Hungary, Italy and France was molecularly analysed. Species boundaries were tested by sequencing the fungal barcoding region ITS rDNA. The results confirm that Dae- daleopsis confragosa and D. tricolor cannot be separated on species level when using ITS data. The same conclusion has already been drawn for Czech specimens by KOUKOL & al. 2014 (Cech Mycol. 66: 107–119) with a multigene analysis. Zusammenfassung: Herbarmaterial von Daedaleopsis confragosa, D. tricolor und D. nitida aus verschiedenen Regionen in Österreich, aus Ungarn, Italien und Frankreich wurde moleku- lar analysiert. Die Artabgrenzung wurde durch Sequenzierung der pilzlichen Barcoderegion ITS rDNA getestet. Die Ergebnisse bestätigen, dass Daedaleopsis confragosa und D. tricolor unter Verwendung der ITS-Daten nicht auf Artniveau getrennt werden können. Diese Schlussfolgerung wurde bereits für tschechische Aufsammlungen anhand einer Multigen- Analyse durch KOUKOL & al. -
Microbial Diversity of a Mediterranean Soil and Its Changes After Biotransformed Dry Olive Residue Amendment
Dartmouth College Dartmouth Digital Commons Dartmouth Scholarship Faculty Work 7-24-2014 Microbial Diversity of a Mediterranean Soil and Its Changes after Biotransformed Dry Olive Residue Amendment José A. Siles Consejo Superior de Investigaciones Científicas (CSIC), Granada, Spain Caio T.C.C Rachid Federal University of Rio de Janeiro Inmaculada Sampedro Dartmouth College Inmaculada García-Romera Consejo Superior de Investigaciones Científicas (CSIC), Granada, Spain James M. Tiedje Michigan State University Follow this and additional works at: https://digitalcommons.dartmouth.edu/facoa Part of the Microbiology Commons Dartmouth Digital Commons Citation Siles, José A.; Rachid, Caio T.C.C; Sampedro, Inmaculada; García-Romera, Inmaculada; and Tiedje, James M., "Microbial Diversity of a Mediterranean Soil and Its Changes after Biotransformed Dry Olive Residue Amendment" (2014). Dartmouth Scholarship. 2921. https://digitalcommons.dartmouth.edu/facoa/2921 This Article is brought to you for free and open access by the Faculty Work at Dartmouth Digital Commons. It has been accepted for inclusion in Dartmouth Scholarship by an authorized administrator of Dartmouth Digital Commons. For more information, please contact [email protected]. Microbial Diversity of a Mediterranean Soil and Its Changes after Biotransformed Dry Olive Residue Amendment Jose´ A. Siles1*, Caio T. C. C. Rachid2,3, Inmaculada Sampedro1,4, Inmaculada Garcı´a-Romera1, James M. Tiedje3 1 Department of Soil Microbiology and Symbiotic Systems, Estacio´n