CULTURING MARINE AMOEBAE 6 Collection and Initial Handling 6 Conditions for Culturing Amoebae 6 Isolation and Maintenance 7 Media 7
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Protozoan Fauna of Freshwater Habitats in South Dum Dum Municipality, North 24 Parganas, West Bengal
Journal of Academia and Industrial Research (JAIR) Volume 3, Issue 3 August 2014 139 ISSN: 2278-5213 RESEARCH ARTICLE Protozoan Fauna of Freshwater Habitats in South Dum Dum Municipality, North 24 Parganas, West Bengal J. Chitra Protozoology Section, Lower Invertebrate Division, M Block, New Alipore, Kolkata-700053, India [email protected]; +91 98315 47265 ______________________________________________________________________________________________ Abstract Wetlands of South Dum Dum Municipality were focused to reveal the status of the planktonic protozoan fauna in detail. A total of 37 different sites were selected and plankton samples from these sites were collected. About 16 sp. of protozoa were identified from few localities from the present investigation. Eight species of rhizopoda belonged to 4 genera, 4 family (Pelomyxidae, Arcellidae, Centropyxidae and Difflugiidae) and 2 order (Pelobintida and Arcellinida), Four species of flagellate belongs to 2 genera, 1 family (Euglinidae) and 1 order (Euglenida), 4 species of ciliate belongs to 4 genera, 4 family (Colepidae, Vorticellidae, Euplotidae and Paramaeciidae), 2 order (Prorodontida and Peritrichida) and 2 suborder (Sporadotrichinia and Peniculina). Among 37 localities, protozoans were observed only in L2, L3, L8, L9, L12, L13, L15, L17, L18, L19, L21, L24, L26, L32, L33, L34 and L36 localities. Protozoan diversity and their abundance were noticed higher in L12, L18, L21, L26, L33 and L34 localities. Euglena viridis, E. acus, E. oxyuris and Phacus acumininata, Pelomyxa palustris, Vorticella companula were found to be higher in abundance and distribution. Keywords: South Dum Dum municipality, planktonic protozoan, Euglena viridis, abundance, distribution. Introduction Dumdum Park, Amarpalli, Telipukur, Nager Bazar, Protozoa are highly abundant in all aquatic habitats and Patipukur and Dum Dum were selected and the plankton greatly involved in food chain (Finlay, 1997). -
Lehman Caves Management Plan
National Park Service U.S. Department of the Interior Great Basin National Park Lehman Caves Management Plan June 2019 ON THE COVER Photograph of visitors on tour of Lehman Caves NPS Photo ON THIS PAGE Photograph of cave shields, Grand Palace, Lehman Caves NPS Photo Shields in the Grand Palace, Lehman Caves. Lehman Caves Management Plan Great Basin National Park Baker, Nevada June 2019 Approved by: James Woolsey, Superintendent Date Executive Summary The Lehman Caves Management Plan (LCMP) guides management for Lehman Caves, located within Great Basin National Park (GRBA). The primary goal of the Lehman Caves Management Plan is to manage the cave in a manner that will preserve and protect cave resources and processes while allowing for respectful recreation and scientific use. More specifically, the intent of this plan is to manage Lehman Caves to maintain its geological, scenic, educational, cultural, biological, hydrological, paleontological, and recreational resources in accordance with applicable laws, regulations, and current guidelines such as the Federal Cave Resource Protection Act and National Park Service Management Policies. Section 1.0 provides an introduction and background to the park and pertinent laws and regulations. Section 2.0 goes into detail of the natural and cultural history of Lehman Caves. This history includes how infrastructure was built up in the cave to allow visitors to enter and tour, as well as visitation numbers from the 1920s to present. Section 3.0 states the management direction and objectives for Lehman Caves. Section 4.0 covers how the Management Plan will meet each of the objectives in Section 3.0. -
Entamoeba Histolytica
Journal of Clinical Microbiology and Biochemical Technology Piotr Nowak1*, Katarzyna Mastalska1 Review Article and Jakub Loster2 1Laboratory of Parasitology, Department of Microbiology, University Hospital in Krakow, 19 Entamoeba Histolytica - Pathogenic Kopernika Street, 31-501 Krakow, Poland 2Department of Infectious Diseases, University Protozoan of the Large Intestine in Hospital in Krakow, 5 Sniadeckich Street, 31-531 Krakow, Poland Humans Dates: Received: 01 December, 2015; Accepted: 29 December, 2015; Published: 30 December, 2015 *Corresponding author: Piotr Nowak, Laboratory of Abstract Parasitology, Department of Microbiology, University Entamoeba histolytica is a cosmopolitan, parasitic protozoan of human large intestine, which is Hospital in Krakow, 19 Kopernika Street, 31- 501 a causative agent of amoebiasis. Amoebiasis manifests with persistent diarrhea containing mucus Krakow, Poland, Tel: +4812/4247587; Fax: +4812/ or blood, accompanied by abdominal pain, flatulence, nausea and fever. In some cases amoebas 4247581; E-mail: may travel through the bloodstream from the intestine to the liver or to other organs, causing multiple www.peertechz.com abscesses. Amoebiasis is a dangerous, parasitic disease and after malaria the second cause of deaths related to parasitic infections worldwide. The highest rate of infections is observed among people living Keywords: Entamoeba histolytica; Entamoeba in or traveling through the tropics. Laboratory diagnosis of amoebiasis is quite difficult, comprising dispar; Entamoeba moshkovskii; Entamoeba of microscopy and methods of molecular biology. Pathogenic species Entamoeba histolytica has to histolytica sensu lato; Entamoeba histolytica sensu be differentiated from other nonpathogenic amoebas of the intestine, so called commensals, that stricto; commensals of the large intestine; amoebiasis very often live in the human large intestine and remain harmless. -
BIOLOGICAL FIELD STATION Cooperstown, New York
BIOLOGICAL FIELD STATION Cooperstown, New York 49th ANNUAL REPORT 2016 STATE UNIVERSITY OF NEW YORK COLLEGE AT ONEONTA OCCASIONAL PAPERS PUBLISHED BY THE BIOLOGICAL FIELD STATION No. 1. The diet and feeding habits of the terrestrial stage of the common newt, Notophthalmus viridescens (Raf.). M.C. MacNamara, April 1976 No. 2. The relationship of age, growth and food habits to the relative success of the whitefish (Coregonus clupeaformis) and the cisco (C. artedi) in Otsego Lake, New York. A.J. Newell, April 1976. No. 3. A basic limnology of Otsego Lake (Summary of research 1968-75). W. N. Harman and L. P. Sohacki, June 1976. No. 4. An ecology of the Unionidae of Otsego Lake with special references to the immature stages. G. P. Weir, November 1977. No. 5. A history and description of the Biological Field Station (1966-1977). W. N. Harman, November 1977. No. 6. The distribution and ecology of the aquatic molluscan fauna of the Black River drainage basin in northern New York. D. E Buckley, April 1977. No. 7. The fishes of Otsego Lake. R. C. MacWatters, May 1980. No. 8. The ecology of the aquatic macrophytes of Rat Cove, Otsego Lake, N.Y. F. A Vertucci, W. N. Harman and J. H. Peverly, December 1981. No. 9. Pictorial keys to the aquatic mollusks of the upper Susquehanna. W. N. Harman, April 1982. No. 10. The dragonflies and damselflies (Odonata: Anisoptera and Zygoptera) of Otsego County, New York with illustrated keys to the genera and species. L.S. House III, September 1982. No. 11. Some aspects of predator recognition and anti-predator behavior in the Black-capped chickadee (Parus atricapillus). -
Protistology Mitochondrial Genomes of Amoebozoa
Protistology 13 (4), 179–191 (2019) Protistology Mitochondrial genomes of Amoebozoa Natalya Bondarenko1, Alexey Smirnov1, Elena Nassonova1,2, Anna Glotova1,2 and Anna Maria Fiore-Donno3 1 Department of Invertebrate Zoology, Faculty of Biology, Saint Petersburg State University, 199034 Saint Petersburg, Russia 2 Laboratory of Cytology of Unicellular Organisms, Institute of Cytology RAS, 194064 Saint Petersburg, Russia 3 University of Cologne, Institute of Zoology, Terrestrial Ecology, 50674 Cologne, Germany | Submitted November 28, 2019 | Accepted December 10, 2019 | Summary In this mini-review, we summarize the current knowledge on mitochondrial genomes of Amoebozoa. Amoebozoa is a major, early-diverging lineage of eukaryotes, containing at least 2,400 species. At present, 32 mitochondrial genomes belonging to 18 amoebozoan species are publicly available. A dearth of information is particularly obvious for two major amoebozoan clades, Variosea and Tubulinea, with just one mitochondrial genome sequenced for each. The main focus of this review is to summarize features such as mitochondrial gene content, mitochondrial genome size variation, and presence or absence of RNA editing, showing if they are unique or shared among amoebozoan lineages. In addition, we underline the potential of mitochondrial genomes for multigene phylogenetic reconstruction in Amoebozoa, where the relationships among lineages are not fully resolved yet. With the increasing application of next-generation sequencing techniques and reliable protocols, we advocate mitochondrial -
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016 April 1981 Revised, May 1982 2nd revision, April 1983 3rd revision, December 1999 4th revision, May 2011 Prepared for U.S. Department of Commerce Ohio Department of Natural Resources National Oceanic and Atmospheric Administration Division of Wildlife Office of Ocean and Coastal Resource Management 2045 Morse Road, Bldg. G Estuarine Reserves Division Columbus, Ohio 1305 East West Highway 43229-6693 Silver Spring, MD 20910 This management plan has been developed in accordance with NOAA regulations, including all provisions for public involvement. It is consistent with the congressional intent of Section 315 of the Coastal Zone Management Act of 1972, as amended, and the provisions of the Ohio Coastal Management Program. OWC NERR Management Plan, 2011 - 2016 Acknowledgements This management plan was prepared by the staff and Advisory Council of the Old Woman Creek National Estuarine Research Reserve (OWC NERR), in collaboration with the Ohio Department of Natural Resources-Division of Wildlife. Participants in the planning process included: Manager, Frank Lopez; Research Coordinator, Dr. David Klarer; Coastal Training Program Coordinator, Heather Elmer; Education Coordinator, Ann Keefe; Education Specialist Phoebe Van Zoest; and Office Assistant, Gloria Pasterak. Other Reserve staff including Dick Boyer and Marje Bernhardt contributed their expertise to numerous planning meetings. The Reserve is grateful for the input and recommendations provided by members of the Old Woman Creek NERR Advisory Council. The Reserve is appreciative of the review, guidance, and council of Division of Wildlife Executive Administrator Dave Scott and the mapping expertise of Keith Lott and the late Steve Barry. -
Product Information Sheet for NR-2597
Product Information Sheet for NR-2597 Entamoeba histolytica 200:NIH Clone 1 nitrogen carrier is preferred. Please read the following recommendations prior to using this material. Catalog No. NR-2597 Growth Conditions: Growth Media: (Derived from ATCC® 50555™) ATCC medium 2154: or equivalent Incubation: For research use only. Not for human use. Temperature: 35–37°C Atmosphere: Axenic and microaerophilic Contributor: Propagation: ATCC® 1. To establish a culture from the frozen state, place a vial in a 35°C water bath for 2 to 3 minutes, until thawed. Product Description: Immerse the vial just enough to cover the frozen Protozoa Classification: Entamoebidae, Entamoeba material. Do not agitate the vial. Agent: Entamoeba histolytica 2. Transfer the vial contents to a 16 x 125 mm screw- Strain: 200:NIH Clone 1 capped borosilicate glass test tube containing 13 mL of 1 ® Source: Strain 200:NIH (ATCC 30458™) monoxenized and growth medium. cloned via microisolation, then reaxenized 3. Screw the cap on tightly and incubate at a 15° horizontal Comments: Entamoeba histolytica 200:NIH was deposited at slant at 35°C. Observe the culture daily and subculture ® 2-5 ATCC in 1975 by Dr. Louis S. Diamond , Laboratory of when peak trophozoite density is observed. Parasitic Diseases, National Institute of Allergy and 4. To subculture, ice the culture for 10 minutes and gently Infectious Diseases, National Institutes of Health, invert 20 times. Bethesda, Maryland. 5. Aseptically transfer a 0.1 and 0.25 mL aliquot to freshly prepared 16 x 125 mm screw-capped borosilicate glass Entamoeba histolytica is a pathogenic protozoan parasite that test tubes containing 13 mL of growth medium. -
The Intestinal Protozoa
The Intestinal Protozoa A. Introduction 1. The Phylum Protozoa is classified into four major subdivisions according to the methods of locomotion and reproduction. a. The amoebae (Superclass Sarcodina, Class Rhizopodea move by means of pseudopodia and reproduce exclusively by asexual binary division. b. The flagellates (Superclass Mastigophora, Class Zoomasitgophorea) typically move by long, whiplike flagella and reproduce by binary fission. c. The ciliates (Subphylum Ciliophora, Class Ciliata) are propelled by rows of cilia that beat with a synchronized wavelike motion. d. The sporozoans (Subphylum Sporozoa) lack specialized organelles of motility but have a unique type of life cycle, alternating between sexual and asexual reproductive cycles (alternation of generations). e. Number of species - there are about 45,000 protozoan species; around 8000 are parasitic, and around 25 species are important to humans. 2. Diagnosis - must learn to differentiate between the harmless and the medically important. This is most often based upon the morphology of respective organisms. 3. Transmission - mostly person-to-person, via fecal-oral route; fecally contaminated food or water important (organisms remain viable for around 30 days in cool moist environment with few bacteria; other means of transmission include sexual, insects, animals (zoonoses). B. Structures 1. trophozoite - the motile vegetative stage; multiplies via binary fission; colonizes host. 2. cyst - the inactive, non-motile, infective stage; survives the environment due to the presence of a cyst wall. 3. nuclear structure - important in the identification of organisms and species differentiation. 4. diagnostic features a. size - helpful in identifying organisms; must have calibrated objectives on the microscope in order to measure accurately. -
A Revised Classification of Naked Lobose Amoebae (Amoebozoa
Protist, Vol. 162, 545–570, October 2011 http://www.elsevier.de/protis Published online date 28 July 2011 PROTIST NEWS A Revised Classification of Naked Lobose Amoebae (Amoebozoa: Lobosa) Introduction together constitute the amoebozoan subphy- lum Lobosa, which never have cilia or flagella, Molecular evidence and an associated reevaluation whereas Variosea (as here revised) together with of morphology have recently considerably revised Mycetozoa and Archamoebea are now grouped our views on relationships among the higher-level as the subphylum Conosa, whose constituent groups of amoebae. First of all, establishing the lineages either have cilia or flagella or have lost phylum Amoebozoa grouped all lobose amoe- them secondarily (Cavalier-Smith 1998, 2009). boid protists, whether naked or testate, aerobic Figure 1 is a schematic tree showing amoebozoan or anaerobic, with the Mycetozoa and Archamoe- relationships deduced from both morphology and bea (Cavalier-Smith 1998), and separated them DNA sequences. from both the heterolobosean amoebae (Page and The first attempt to construct a congruent molec- Blanton 1985), now belonging in the phylum Per- ular and morphological system of Amoebozoa by colozoa - Cavalier-Smith and Nikolaev (2008), and Cavalier-Smith et al. (2004) was limited by the the filose amoebae that belong in other phyla lack of molecular data for many amoeboid taxa, (notably Cercozoa: Bass et al. 2009a; Howe et al. which were therefore classified solely on morpho- 2011). logical evidence. Smirnov et al. (2005) suggested The phylum Amoebozoa consists of naked and another system for naked lobose amoebae only; testate lobose amoebae (e.g. Amoeba, Vannella, this left taxa with no molecular data incertae sedis, Hartmannella, Acanthamoeba, Arcella, Difflugia), which limited its utility. -
Experimental Listeria–Tetrahymena–Amoeba Food Chain Functioning Depends on Bacterial Virulence Traits Valentina I
Pushkareva et al. BMC Ecol (2019) 19:47 https://doi.org/10.1186/s12898-019-0265-5 BMC Ecology RESEARCH ARTICLE Open Access Experimental Listeria–Tetrahymena–Amoeba food chain functioning depends on bacterial virulence traits Valentina I. Pushkareva1, Julia I. Podlipaeva2, Andrew V. Goodkov2 and Svetlana A. Ermolaeva1,3* Abstract Background: Some pathogenic bacteria have been developing as a part of terrestrial and aquatic microbial eco- systems. Bacteria are consumed by bacteriovorous protists which are readily consumed by larger organisms. Being natural predators, protozoa are also an instrument for selection of virulence traits in bacteria. Moreover, protozoa serve as a “Trojan horse” that deliver pathogens to the human body. Here, we suggested that carnivorous amoebas feeding on smaller bacteriovorous protists might serve as “Troy” themselves when pathogens are delivered to them with their preys. A dual role might be suggested for protozoa in the development of traits required for bacterial passage along the food chain. Results: A model food chain was developed. Pathogenic bacteria L. monocytogenes or related saprophytic bacteria L. innocua constituted the base of the food chain, bacteriovorous ciliate Tetrahymena pyriformis was an intermedi- ate consumer, and carnivorous amoeba Amoeba proteus was a consumer of the highest order. The population of A. proteus demonstrated variations in behaviour depending on whether saprophytic or virulent Listeria was used to feed the intermediate consumer, T. pyriformis. Feeding of A. proteus with T. pyriformis that grazed on saprophytic bacteria caused prevalence of pseudopodia-possessing hungry amoebas. Statistically signifcant prevalence of amoebas with spherical morphology typical for fed amoebas was observed when pathogenic L. -
Multiple Roots of Fruiting Body Formation in Amoebozoa
GBE Multiple Roots of Fruiting Body Formation in Amoebozoa Falk Hillmann1,*, Gillian Forbes2, Silvia Novohradska1, Iuliia Ferling1,KonstantinRiege3,MarcoGroth4, Martin Westermann5,ManjaMarz3, Thomas Spaller6, Thomas Winckler6, Pauline Schaap2,and Gernot Glo¨ ckner7,* 1Junior Research Group Evolution of Microbial Interaction, Leibniz Institute for Natural Product Research and Infection Biology – Hans Kno¨ ll Institute (HKI), Jena, Germany 2Division of Cell and Developmental Biology, School of Life Sciences, University of Dundee, United Kingdom 3Bioinformatics/High Throughput Analysis, Friedrich Schiller University Jena, Germany 4CF DNA-Sequencing, Leibniz Institute on Aging Research, Jena, Germany 5Electron Microscopy Center, Jena University Hospital, Germany 6Pharmaceutical Biology, Institute of Pharmacy, Friedrich Schiller University Jena, Germany 7Institute of Biochemistry I, Medical Faculty, University of Cologne, Germany *Corresponding authors: E-mails: [email protected]; [email protected]. Accepted: January 11, 2018 Data deposition: The genome sequence and gene predictions of Protostelium aurantium and Protostelium mycophagum were deposited in GenBank under the Accession Numbers MDYQ00000000 and MZNV00000000, respectively. The mitochondrial genome of P. mycophagum was deposited under the Accession number KY75056 and that of P. aurantium under the Accession number KY75057. The RNAseq reads can be found in Bioproject Accession PRJNA338377. All sequence and annotation data are also available directly from the authors. The P. aurantium strain is deposited in the Jena Microbial Resource Collection (JMRC) under accession number SF0012540. Abstract Establishment of multicellularity represents a major transition in eukaryote evolution. A subgroup of Amoebozoa, the dictyos- teliids, has evolved a relatively simple aggregative multicellular stage resulting in a fruiting body supported by a stalk. Protosteloid amoeba, which are scattered throughout the amoebozoan tree, differ by producing only one or few single stalked spores. -
Protist Phylogeny and the High-Level Classification of Protozoa
Europ. J. Protistol. 39, 338–348 (2003) © Urban & Fischer Verlag http://www.urbanfischer.de/journals/ejp Protist phylogeny and the high-level classification of Protozoa Thomas Cavalier-Smith Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK; E-mail: [email protected] Received 1 September 2003; 29 September 2003. Accepted: 29 September 2003 Protist large-scale phylogeny is briefly reviewed and a revised higher classification of the kingdom Pro- tozoa into 11 phyla presented. Complementary gene fusions reveal a fundamental bifurcation among eu- karyotes between two major clades: the ancestrally uniciliate (often unicentriolar) unikonts and the an- cestrally biciliate bikonts, which undergo ciliary transformation by converting a younger anterior cilium into a dissimilar older posterior cilium. Unikonts comprise the ancestrally unikont protozoan phylum Amoebozoa and the opisthokonts (kingdom Animalia, phylum Choanozoa, their sisters or ancestors; and kingdom Fungi). They share a derived triple-gene fusion, absent from bikonts. Bikonts contrastingly share a derived gene fusion between dihydrofolate reductase and thymidylate synthase and include plants and all other protists, comprising the protozoan infrakingdoms Rhizaria [phyla Cercozoa and Re- taria (Radiozoa, Foraminifera)] and Excavata (phyla Loukozoa, Metamonada, Euglenozoa, Percolozoa), plus the kingdom Plantae [Viridaeplantae, Rhodophyta (sisters); Glaucophyta], the chromalveolate clade, and the protozoan phylum Apusozoa (Thecomonadea, Diphylleida). Chromalveolates comprise kingdom Chromista (Cryptista, Heterokonta, Haptophyta) and the protozoan infrakingdom Alveolata [phyla Cilio- phora and Miozoa (= Protalveolata, Dinozoa, Apicomplexa)], which diverged from a common ancestor that enslaved a red alga and evolved novel plastid protein-targeting machinery via the host rough ER and the enslaved algal plasma membrane (periplastid membrane).