SYNTHESIS and DEGRADATION of PORPHYRINS by Dr
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Spectroscopy of Porphyrins
BORIS F. KIM and JOSEPH BOHANDY SPECTROSCOPY OF PORPHYRINS Porphyrins are an important class of compounds that are of interest in molecular biology because of the important roles they play in vital biochemical systems such as biochemical energy conversion in animals, oxygen transport in blood, and photosynthetic energy conversion in plants. We are studying the physical properties of the energy states of porphyrins using the techniques of ex perimental and theoretical spectroscopy with the aim of contributing to a basic understanding of their biochemical behavior. INTRODUCTION Metalloporphin Porphyrins are a class of complex organic chemical compounds found in such diverse places as crude oil, plants, and human beings. They are, in most cases, tailored to carry out vital chemical transformations in intricate biochemical or biophysical systems. They are the key constituents of chlorophyll in plants and of hemoglobin in animals. Without them, life would y be impossible. t Free base porphin These molecules display a wide range of chemical and physical properties that depend on the structural details of the particular porphyrin molecule. All por ~x phyrins are vividly colored and absorb light in the visible and ultraviolet regions of the spectrum. Some exhibit luminescence, paramagnetism, photoconduc tion, or semiconduction. Spme are photosensitizers Wavelength (nanometers) or catalysts. Scientists from several disciplines have been interested in unraveling the principles that cause Fig. 1-The chemical structures for the two forms of por· this diversity of properties. phin are shown on the left. A carbon atom and a hydrogen The simplest compound of all porphyrins is por atom are understood to be at each apex not attached to a nitrogen atom. -
Evidence for the Role of Endogenous Carbon Monoxide in Memory Processing
Evidence for the Role of Endogenous Carbon Monoxide in Memory Processing M. C. Cutajar and T. M. Edwards Downloaded from http://mitprc.silverchair.com/jocn/article-pdf/19/4/557/1816404/jocn.2007.19.4.557.pdf by guest on 18 May 2021 Abstract & For a decade and a half, nitric oxide (NO) has been impli- number of electrophysiological investigations have concluded cated in memory processing across a wide variety of tasks and that endogenous CO is involved in long-term potentiation. species. Comparatively, endogenously produced carbon mon- Although not evidence for a role in memory per se, these oxide (CO) has lagged behind as a target for research into the studies did point to the possible importance of CO in mem- pharmacological processes underlying memory formation. This ory processing. In addition, there is now evidence to suggest is surprising given that CO is formed in memory-associated that endogenous CO is important in avoidance learning and brain regions, is structurally similar to NO, and along with possible for other tasks. This review therefore seeks to pro- NO can activate guanylate cyclase, which is an enzyme well mote endogenous CO as a potentially important target for characterized in memory processing. Nevertheless, a limited memory research. & INTRODUCTION important in memory processing (Kemenes, Kemenes, Carbon monoxide (CO) is traditionally thought of as Andrew, Benjamin, & O’Shea, 2002; Izquierdo et al., an air pollutant. Indeed, inhalation of environmental 2000; Bernabeu et al., 1997; Kendrick et al., 1997). By CO in sufficient quantities may lead to intoxication detailing the evidence for CO production in the hippo- through the production of carbonmonoxyhemoglobin, campus, its role in synaptic plasticity and those few which results in decreased oxygen storage and trans- behavioral studies implicating CO in memory consoli- port in the bloodstream. -
An Investigation of the Chlorophylls of Selected Prasinophyte Algae
University of Nebraska at Omaha DigitalCommons@UNO Student Work 5-1-1986 An investigation of the chlorophylls of selected prasinophyte algae. Leslie Carlat Kwasnieski Follow this and additional works at: https://digitalcommons.unomaha.edu/studentwork Recommended Citation Kwasnieski, Leslie Carlat, "An investigation of the chlorophylls of selected prasinophyte algae." (1986). Student Work. 3376. https://digitalcommons.unomaha.edu/studentwork/3376 This Thesis is brought to you for free and open access by DigitalCommons@UNO. It has been accepted for inclusion in Student Work by an authorized administrator of DigitalCommons@UNO. For more information, please contact [email protected]. AN INVESTIGATION OF THE CHLOROPHYLLS OF SELECTED PRASINOPHYTE ALGAE A Thesis Presented to the Department of Biology and the Faculty of the Graduate College U n iv e rs ity o f Nebraska In Partial Fulfillment o f the Requirements fo r the Degree Master of Arts University of Nebraska at Omaha by Leslie Carl at Kwasnieski May, 1986 UMI Number: EP74978 All rights reserved INFORMATION TO ALL USERS The quality of this reproduction is dependent upon the quality of the copy submitted. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted. Also, if material had to be removed, a note will indicate the deletion. UMI EP74978 Published by ProQuest LLC (2015). Copyright in the Dissertation held by the Author. Microform Edition © ProQuest LLC. All rights reserved. This work is protected against unauthorized copying under Title 17, United States Code ProQuest ProQuest LLC. 789 East Eisenhower Parkway P.O. Box 1345 Ann Arbor, Ml 48105-1346 THESIS ACCEPTANCE Accepted for the faculty of the Graduate College, University of Nebraska, in partial fulfillm ent of the requirements for the degree Master of Arts, University of Nebraska at Omaha. -
Hyperbilirubinemia
Porphyrins Porphyrins (Porphins) are cyclic tetrapyrol compounds formed by the linkage )). of four pyrrole rings through methenyl bridges (( HC In the reduced porphyrins (Porphyrinogens) the linkage of four pyrrole rings (tetrapyrol) through methylene bridges (( CH2 )) The characteristic property of porphyrins is the formation of complexes with the metal ion bound to nitrogen atoms of the pyrrole rings. e.g. Heme (iron porphyrin). Proteins which contain heme ((hemoproteins)) are widely distributed e.g. Hemoglobin, Myoglobin, Cytochromes, Catalase & Tryptophan pyrrolase. Natural porphyrins have substituent side chains on the eight hydrogen atoms numbered on the pyrrole rings. These side chains are: CH 1-Methyl-group (M)… (( 3 )) 2-Acetate-group (A)… (( CH2COOH )) 3-Propionate-group (P)… (( CH2CH2COOH )) 4-Vinyl-group (V)… (( CH CH2 )) Porphyrins with asymmetric arrangement of the side chains are classified as type III porphyrins while those with symmetric arrangement of the side chains are classified as type I porphyrins. Only types I & III are present in nature & type III series is more important because it includes heme. 1 Heme Biosynthesis Heme biosynthesis occurs through the following steps: 1-The starting reaction is the condensation between succinyl-CoA ((derived from citric acid cycle in the mitochondria)) & glycine, this reaction is a rate limiting reaction in the hepatic heme synthesis, it occurs in the mitochondria & is catalyzed by ALA synthase (Aminolevulinate synthase) enzyme in the presence of pyridoxal phosphate as a cofactor. The product of this reaction is α-amino-β-ketoadipate which is rapidly decarboxylated to form δ-aminolevulinate (ALA). 2-In the cytoplasm condensation reaction between two molecules of ALA is catalyzed by ALA dehydratase enzyme to form two molecules of water & one 2 molecule of porphobilinogen (PBG) which is a precursor of pyrrole. -
Levels of 6-Aminolevulinate Dehydratase, Uroporphyrinogen-I Synthase, and Protoporphyrin IX in Erythrocytes from Anemic Mutant M
Proc. Natl. Acad. Sci. USA Vol. 74, No. 3, pp. 1181-1184, March 1977 Genetics Levels of 6-aminolevulinate dehydratase, uroporphyrinogen-I synthase, and protoporphyrin IX in erythrocytes from anemic mutant mice (hemolytic disease/reticulocytosis/heme biosynthesis/development) SHIGERU SASSA* AND SELDON E. BERNSTEINt * The Rockefeller University, New York, N.Y. 10021; and t The Jackson Laboratory, Bar Harbor, Maine 04609 Communicated by Elizabeth S. Russell, December 23, 1976 ABSTRACT Levels of erythrocyte 6-aminolevulinate MATERIALS AND METHODS dehydratase [ALA-dehydratase; porphobilinogen synthase; 5- aminolevulinate hydro-lyase (adding 5-aminolevulinate and Animals. Genetically anemic mutant mice, their littermate cyclizing), EC 4.2.1.241, uroporphyrinogen-I synthase [Uro- controls, and the C57BL/6J and DBA/2J inbred strains were synthase; porphobilinogen ammonia-lyase (polymerizing), EC reared in research colonies of the Jackson Laboratory. The or- 4.3.1.8], and protoporphyrin IX (Proto) were measured by sen- igins and hematological, as well as general, characteristics of sitive semimicroassays using 2-5 IAl of whole blood obtained the various types of anemic mice have been reviewed elsewhere from normal and anemic mutant mice. The levels of erythrocyte (1-3). The mutants employed in these studies of ALA-dehydratase and Uro-synthase showed marked develop- hemolytic mental changes and ALA-dehydratase was influenced by the disease included: jaundice (ja) (4), spherocytosis (sph) (5), he- L v gene. molytic anemia (ha) (1, 6), and normoblastosis (nb) (1, 7). Other Mice with overt hemolytic diseases (ja/ja, sph/sph, nb/nb, anemias used were: microcytosis (mk) (8), Steel (SI) (9), W series ha/ha) had 10- to 20-fold increases in ALA-dehydratase, Uro- (W) (10), and Hertwig's anemia (an) (11). -
Electronic Spectroscopy of Free Base Porphyrins and Metalloporphyrins
Absorption and Fluorescence Spectroscopy of Tetraphenylporphyrin§ and Metallo-Tetraphenylporphyrin Introduction The word porphyrin is derived from the Greek porphura meaning purple, and all porphyrins are intensely coloured1. Porphyrins comprise an important class of molecules that serve nature in a variety of ways. The Metalloporphyrin ring is found in a variety of important biological system where it is the active component of the system or in some ways intimately connected with the activity of the system. Many of these porphyrins synthesized are the basic structure of biological porphyrins which are the active sites of numerous proteins, whose functions range from oxygen transfer and storage (hemoglobin and myoglobin) to electron transfer (cytochrome c, cytochrome oxidase) to energy conversion (chlorophyll). They also have been proven to be efficient sensitizers and catalyst in a number of chemical and photochemical processes especially photodynamic therapy (PDT). The diversity of their functions is due in part to the variety of metals that bind in the “pocket” of the porphyrin ring system (Fig. 1). Figure 1. Metallated Tetraphenylporphyrin Upon metalation the porphyrin ring system deprotonates, forming a dianionic ligand (Fig. 2). The metal ions behave as Lewis acids, accepting lone pairs of electrons ________________________________ § We all need to thank Jay Stephens for synthesizing the H2TPP 2 from the dianionic porphyrin ligand. Unlike most transition metal complexes, their color is due to absorption(s) within the porphyrin ligand involving the excitation of electrons from π to π* porphyrin ring orbitals. Figure 2. Synthesis of Zn(TPP) The electronic absorption spectrum of a typical porphyrin consists of a strong transition to the second excited state (S0 S2) at about 400 nm (the Soret or B band) and a weak transition to the first excited state (S0 S1) at about 550 nm (the Q band). -
Porphyrins & Bile Pigments
Bio. 2. ASPU. Lectu.6. Prof. Dr. F. ALQuobaili Porphyrins & Bile Pigments • Biomedical Importance These topics are closely related, because heme is synthesized from porphyrins and iron, and the products of degradation of heme are the bile pigments and iron. Knowledge of the biochemistry of the porphyrins and of heme is basic to understanding the varied functions of hemoproteins in the body. The porphyrias are a group of diseases caused by abnormalities in the pathway of biosynthesis of the various porphyrins. A much more prevalent clinical condition is jaundice, due to elevation of bilirubin in the plasma, due to overproduction of bilirubin or to failure of its excretion and is seen in numerous diseases ranging from hemolytic anemias to viral hepatitis and to cancer of the pancreas. • Metalloporphyrins & Hemoproteins Are Important in Nature Porphyrins are cyclic compounds formed by the linkage of four pyrrole rings through methyne (==HC—) bridges. A characteristic property of the porphyrins is the formation of complexes with metal ions bound to the nitrogen atom of the pyrrole rings. Examples are the iron porphyrins such as heme of hemoglobin and the magnesium‐containing porphyrin chlorophyll, the photosynthetic pigment of plants. • Natural Porphyrins Have Substituent Side Chains on the Porphin Nucleus The porphyrins found in nature are compounds in which various side chains are substituted for the eight hydrogen atoms numbered in the porphyrin nucleus. As a simple means of showing these substitutions, Fischer proposed a shorthand formula in which the methyne bridges are omitted and a porphyrin with this type of asymmetric substitution is classified as a type III porphyrin. -
Magnesium-Protoporphyrin Chelatase of Rhodobacter
Proc. Natl. Acad. Sci. USA Vol. 92, pp. 1941-1944, March 1995 Biochemistry Magnesium-protoporphyrin chelatase of Rhodobacter sphaeroides: Reconstitution of activity by combining the products of the bchH, -I, and -D genes expressed in Escherichia coli (protoporphyrin IX/tetrapyrrole/chlorophyll/bacteriochlorophyll/photosynthesis) LUCIEN C. D. GIBSON*, ROBERT D. WILLOWSt, C. GAMINI KANNANGARAt, DITER VON WETTSTEINt, AND C. NEIL HUNTER* *Krebs Institute for Biomolecular Research and Robert Hill Institute for Photosynthesis, Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, S10 2TN, United Kingdom; and tCarlsberg Laboratory, Department of Physiology, Gamle Carlsberg Vej 10, DK-2500 Copenhagen Valby, Denmark Contributed by Diter von Wettstein, November 14, 1994 ABSTRACT Magnesium-protoporphyrin chelatase lies at Escherichia coli and demonstrate that the extracts of the E. coli the branch point of the heme and (bacterio)chlorophyll bio- transformants can convert Mg-protoporphyrin IX to Mg- synthetic pathways. In this work, the photosynthetic bacte- protoporphyrin monomethyl ester (20, 21). Apart from posi- rium Rhodobacter sphaeroides has been used as a model system tively identifying bchM as the gene encoding the Mg- for the study of this reaction. The bchH and the bchI and -D protoporphyrin methyltransferase, this work opens up the genes from R. sphaeroides were expressed in Escherichia coli. possibility of extending this approach to other parts of the When cell-free extracts from strains expressing BchH, BchI, pathway. In this paper, we report the expression of the genes and BchD were combined, the mixture was able to catalyze the bchH, -I, and -D from R. sphaeroides in E. coli: extracts from insertion of Mg into protoporphyrin IX in an ATP-dependent these transformants, when combined in vitro, are highly active manner. -
Emerging Applications of Porphyrins and Metalloporphyrins in Biomedicine and Diagnostic Magnetic Resonance Imaging
biosensors Review Emerging Applications of Porphyrins and Metalloporphyrins in Biomedicine and Diagnostic Magnetic Resonance Imaging Muhammad Imran 1,*, Muhammad Ramzan 2,*, Ahmad Kaleem Qureshi 1, Muhammad Azhar Khan 2 and Muhammad Tariq 3 1 Department of Chemistry, Baghdad-Ul-Jadeed Campus, The Islamia University of Bahawalpur, Bahawalpur 63100, Pakistan; [email protected] 2 Department of Physics, Baghdad-Ul-Jadeed Campus, The Islamia University of Bahawalpur, Bahawalpur 63100, Pakistan; [email protected] 3 Institute of Chemical Sciences, Bahauddin Zakariya University, Multan 60800, Pakistan; [email protected] * Correspondence: [email protected] (M.I.); [email protected] (M.R.) Received: 26 September 2018; Accepted: 17 October 2018; Published: 19 October 2018 Abstract: In recent years, scientific advancements have constantly increased at a significant rate in the field of biomedical science. Keeping this in view, the application of porphyrins and metalloporphyrins in the field of biomedical science is gaining substantial importance. Porphyrins are the most widely studied tetrapyrrole-based compounds because of their important roles in vital biological processes. The cavity of porphyrins containing four pyrrolic nitrogens is well suited for the binding majority of metal ions to form metalloporphyrins. Porphyrins and metalloporphyrins possess peculiar photochemical, photophysical, and photoredox properties which are tunable through structural modifications. Their beneficial photophysical properties, such as the long wavelength of emission and absorption, high singlet oxygen quantum yield, and low in vivo toxicity, have drawn scientists’ interest to discover new dimensions in the biomedical field. Applications of porphyrins and metalloporphyrins have been pursued in the perspective of contrast agents for magnetic resonance imaging (MRI), photodynamic therapy (PDT) of cancer, bio-imaging, and other biomedical applications. -
Determination of Urinary Porphyrin by DEAE-Cellulose Chromatography and Visual Spectrophotometry
A n n a l s o f C l i n i c a l a n d L a b o r a t o r y S c i e n c e , Vol. 4, No. 1 Copyright © 1974, Institute for Clinical Science Determination of Urinary Porphyrin by DEAE-Cellulose Chromatography and Visual Spectrophotometry MARTHA I. WALTERS, P h .D.* Ohio Valley Hospital, Steubenville, OH 43952 ABSTRACT A simple, reliable and rapid method for the isolation and determination of urinary porphyrins is described. Both uroporphyrin and coproporphyrin are quantitatively adsorbed by DEAE cellulose. Urobilinogen, urobilin, and bili rubin are removed with sodium acetate. The isolated porphyrins, eluted with 1 N HC1, are measured spectrophotometrically, and the excretion is related to that of creatinine. Porphyrin excretion was studied in normal adults and children, and in patients with disorders of porphyrin metabolism ( e.g., in lead poisoning, hemolytic anemia, hepatic disease and porphyria) in order to eval uate the method. The coefficient of variation of replicate analyses of a sample containing 200 ¡xg porphyrin per gm creatinine was 3.5 percent. The correlation coefficient between 83 duplicate analyses was 0.993. Introduction or adsorption onto an adsorbant followed Patients with porphyria show great in by elution. Methods combining extraction creases in the excretion of uroporphyrin, and adsorption have been the most com coproporphyrin and their precursors indi monly used,3’12 but procedures employing cating a primary abnormality of porphyrin ion-exchange chromatography,11’13 electro synthesis (figure 1). In addition to these phoresis,4’10 and thin-layer chromatogra disorders, there are a number of diseases phy15’16 also have been described. -
UTMB Testing Packet/Order Form
Galveston Porphyria Laboratory The University of Texas Medical Branch Galveston, Texas Instructions for Collecting, Processing and Shipping Samples for Porphyria Testing This packet contains the following: • Instructions for collecting, processing and shipping samples • Order form for testing • A primer on laboratory testing for porphyrias Updated 9 June 2021 Page 1 Instructions for Collecting, Processing and Shipping Samples I. Sample Collection and Processing GENERAL INSTRUCTIONS 1. Types of samples used for porphyria testing (For choice of tests, see the attached Primer): a. Urine – spot (random or single void) urine sample is recommended with no preservative. A first-void sample on arising in the morning is preferred. i. Creatinine is measured on all urine samples for “normalization” of the results. The amount of creatinine excreted every day is quite constant because it reflects muscle mass. Most adults excrete 1-2 grams of creatinine daily in urine. Expressing results per gram of creatinine corrects for variation in the hydration state of the patient over time. The sample should be light protected (e.g. by wrapping the container in aluminum foil) and immediately refrigerated or frozen. ii. A 24-hour collection is also suitable, but 5 gm of sodium carbonate (not sodium bicarbonate) should be added to the container before starting the collection, the container should be refrigerated and protected from light during the collection (e.g. by using a dark-colored plastic collection bottle). The total volume must be measured in a single container and only a portion (an “aliquot”) sent to the laboratory for testing. Detailed instructions on how to properly collect a 24-hour urine must be given verbally to the patient along with the container containing the preservative. -
Bilirubin Metabolism
Bilirubin Metabolism By Aseel .j.abdullah Introduction • Bilirubin is the orange-yellow pigment derived from senescent red blood cells. • It is a toxic waste product in the body. • It is extracted and biotransformed mainly in the liver, and excreted in bile and urine. • It is a bile pigment • Elevations in serum and urine bilirubin levels are normally associated with Jaundice. Erythrocytes become “old” as they lose their flexibility and increasingly rigid and fragile,they easily destruct during passage through tight circulation spots, especially in spleen, where the intra-capillary space is about 3 micron as compared to 8 micron of cell size RBCs useful life span is 100 to 120 days,After which they become trapped and fragment in smaller circulatory channels, particularly in those of the spleen. For this reason, the spleen is sometimes called the “red blood cell graveyard.” Dying erythrocytes are engulfed and destroyed by macrophages. Formation of Bilirubin • Primary site of synthesis:- SPLEEN : The Graveyard of Red Blood Cells • Secondary site of synthesis:- LIVER & BONE MARROW Pathophysiology RBCs Breakdown Hemoglobin Produces & Breakdown Heme Heme Oxygenase Biliverdin Biliverdin Reductase Bilirubin In Blood Unconjugated bilirubin • The bilirubin synthesized in – Lipid soluble spleen, liver & bone marrow – : limits excretion is unconjugated bilirubin. – 1 gm albumin binds 8.5 mg bilirubin • It is hydrophobic in nature so – Fatty acids & drugs can it is transported to the liver displace bilirubin as a complex with the – Indirect positive reaction plasma protein, albumin. in van den Bergh test • Most of the reabsorbed urobilinogen is taken up by the liver & is re-excreted in the bile.