Macroevolutionary Speciation Rates Are Decoupled from the Evolution of Intrinsic Reproductive Isolation in Drosophila and Birds
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Lecture 20 - the History of Life on Earth
Lecture 20 - The History of Life on Earth Lecture 20 The History of Life on Earth Astronomy 141 – Autumn 2012 This lecture reviews the history of life on Earth. Rapid diversification of anaerobic prokaryotes during the Proterozoic Eon Emergence of Photosynthesis and the rise of O2 in the Earth’s atmosphere. Rise of Eukaryotes and the Cambrian Explosion in biodiversity at the start of the Phanerozoic Eon Colonization of land first by plants, then by animals Emergence of primates, then hominids, then humans. A brief digression on notation: “ya” = “years ago” Introduce a simple compact notation for writing the length of time before the present day. For example: “3.5 Billion years ago” “454 Million years ago” Gya = “giga-years ago”, hence 3.5 Gya = 3.5 Billion years ago Mya = “mega-years ago”, hence 454 Mya = 454 Million years ago [Note: some sources use Ga and Ma] Astronomy 141 - Winter 2012 1 Lecture 20 - The History of Life on Earth The four Eons of geological time. Hadean: 4.5 – 3.8 Gya: Formation, oceans & atmosphere Archaean: 3.8 – 2.5 Gya: Stromatolites & fossil bacteria Proterozoic: 2.5 Gya – 454 Mya: Eukarya and Oxygen Phanerozoic: since 454 Mya: Rise of plant and animal life The Archaean Eon began with the end of heavy bombardment ~3.8 Gya. Conditions stabilized. Oceans, but no O2 in the atmosphere. Stromatolites appear in the geological record ~3.5 Gya and thrived for >1 Billion years Rise of anaerobic microbes in the deep ocean & shores using Chemosynthesis. Time of rapid diversification of life driven by Natural Selection. -
Population Size and the Rate of Evolution
Review Population size and the rate of evolution 1,2 1 3 Robert Lanfear , Hanna Kokko , and Adam Eyre-Walker 1 Ecology Evolution and Genetics, Research School of Biology, Australian National University, Canberra, ACT, Australia 2 National Evolutionary Synthesis Center, Durham, NC, USA 3 School of Life Sciences, University of Sussex, Brighton, UK Does evolution proceed faster in larger or smaller popu- mutations occur and the chance that each mutation lations? The relationship between effective population spreads to fixation. size (Ne) and the rate of evolution has consequences for The purpose of this review is to synthesize theoretical our ability to understand and interpret genomic varia- and empirical knowledge of the relationship between tion, and is central to many aspects of evolution and effective population size (Ne, Box 1) and the substitution ecology. Many factors affect the relationship between Ne rate, which we term the Ne–rate relationship (NeRR). A and the rate of evolution, and recent theoretical and positive NeRR implies faster evolution in larger popula- empirical studies have shown some surprising and tions relative to smaller ones, and a negative NeRR implies sometimes counterintuitive results. Some mechanisms the opposite (Figure 1A,B). Although Ne has long been tend to make the relationship positive, others negative, known to be one of the most important factors determining and they can act simultaneously. The relationship also the substitution rate [5–8], several novel predictions and depends on whether one is interested in the rate of observations have emerged in recent years, causing some neutral, adaptive, or deleterious evolution. Here, we reassessment of earlier theory and highlighting some gaps synthesize theoretical and empirical approaches to un- in our understanding. -
Transformations of Lamarckism Vienna Series in Theoretical Biology Gerd B
Transformations of Lamarckism Vienna Series in Theoretical Biology Gerd B. M ü ller, G ü nter P. Wagner, and Werner Callebaut, editors The Evolution of Cognition , edited by Cecilia Heyes and Ludwig Huber, 2000 Origination of Organismal Form: Beyond the Gene in Development and Evolutionary Biology , edited by Gerd B. M ü ller and Stuart A. Newman, 2003 Environment, Development, and Evolution: Toward a Synthesis , edited by Brian K. Hall, Roy D. Pearson, and Gerd B. M ü ller, 2004 Evolution of Communication Systems: A Comparative Approach , edited by D. Kimbrough Oller and Ulrike Griebel, 2004 Modularity: Understanding the Development and Evolution of Natural Complex Systems , edited by Werner Callebaut and Diego Rasskin-Gutman, 2005 Compositional Evolution: The Impact of Sex, Symbiosis, and Modularity on the Gradualist Framework of Evolution , by Richard A. Watson, 2006 Biological Emergences: Evolution by Natural Experiment , by Robert G. B. Reid, 2007 Modeling Biology: Structure, Behaviors, Evolution , edited by Manfred D. Laubichler and Gerd B. M ü ller, 2007 Evolution of Communicative Flexibility: Complexity, Creativity, and Adaptability in Human and Animal Communication , edited by Kimbrough D. Oller and Ulrike Griebel, 2008 Functions in Biological and Artifi cial Worlds: Comparative Philosophical Perspectives , edited by Ulrich Krohs and Peter Kroes, 2009 Cognitive Biology: Evolutionary and Developmental Perspectives on Mind, Brain, and Behavior , edited by Luca Tommasi, Mary A. Peterson, and Lynn Nadel, 2009 Innovation in Cultural Systems: Contributions from Evolutionary Anthropology , edited by Michael J. O ’ Brien and Stephen J. Shennan, 2010 The Major Transitions in Evolution Revisited , edited by Brett Calcott and Kim Sterelny, 2011 Transformations of Lamarckism: From Subtle Fluids to Molecular Biology , edited by Snait B. -
IN EVOLUTION JACK LESTER KING UNIVERSITY of CALIFORNIA, SANTA BARBARA This Paper Is Dedicated to Retiring University of California Professors Curt Stern and Everett R
THE ROLE OF MUTATION IN EVOLUTION JACK LESTER KING UNIVERSITY OF CALIFORNIA, SANTA BARBARA This paper is dedicated to retiring University of California Professors Curt Stern and Everett R. Dempster. 1. Introduction Eleven decades of thought and work by Darwinian and neo-Darwinian scientists have produced a sophisticated and detailed structure of evolutionary ,theory and observations. In recent years, new techniques in molecular biology have led to new observations that appear to challenge some of the basic theorems of classical evolutionary theory, precipitating the current crisis in evolutionary thought. Building on morphological and paleontological observations, genetic experimentation, logical arguments, and upon mathematical models requiring simplifying assumptions, neo-Darwinian theorists have been able to make some remarkable predictions, some of which, unfortunately, have proven to be inaccurate. Well-known examples are the prediction that most genes in natural populations must be monomorphic [34], and the calculation that a species could evolve at a maximum rate of the order of one allele substitution per 300 genera- tions [13]. It is now known that a large proportion of gene loci are polymorphic in most species [28], and that evolutionary genetic substitutions occur in the human line, for instance, at a rate of about 50 nucleotide changes per generation [20], [24], [25], [26]. The puzzling observation [21], [40], [46], that homologous proteins in different species evolve at nearly constant rates is very difficult to account for with classical evolutionary theory, and at the very least gives a solid indication that there are qualitative differences between the ways molecules evolve and the ways morphological structures evolve. -
Microevolution and the Genetics of Populations Microevolution Refers to Varieties Within a Given Type
Chapter 8: Evolution Lesson 8.3: Microevolution and the Genetics of Populations Microevolution refers to varieties within a given type. Change happens within a group, but the descendant is clearly of the same type as the ancestor. This might better be called variation, or adaptation, but the changes are "horizontal" in effect, not "vertical." Such changes might be accomplished by "natural selection," in which a trait within the present variety is selected as the best for a given set of conditions, or accomplished by "artificial selection," such as when dog breeders produce a new breed of dog. Lesson Objectives ● Distinguish what is microevolution and how it affects changes in populations. ● Define gene pool, and explain how to calculate allele frequencies. ● State the Hardy-Weinberg theorem ● Identify the five forces of evolution. Vocabulary ● adaptive radiation ● gene pool ● migration ● allele frequency ● genetic drift ● mutation ● artificial selection ● Hardy-Weinberg theorem ● natural selection ● directional selection ● macroevolution ● population genetics ● disruptive selection ● microevolution ● stabilizing selection ● gene flow Introduction Darwin knew that heritable variations are needed for evolution to occur. However, he knew nothing about Mendel’s laws of genetics. Mendel’s laws were rediscovered in the early 1900s. Only then could scientists fully understand the process of evolution. Microevolution is how individual traits within a population change over time. In order for a population to change, some things must be assumed to be true. In other words, there must be some sort of process happening that causes microevolution. The five ways alleles within a population change over time are natural selection, migration (gene flow), mating, mutations, or genetic drift. -
Reproductive Isolation of Two Sympatric Louseworts, Pedicularis
Blackwell Publishing LtdOxford, UKBIJBiological Journal of the Linnean Society0024-4066© 2006 The Linnean Society of London? 2006 90? 3748 Original Article REPRODUCTIVE ISOLATION IN SYMPATRIC LOUSEWORTS C.-F. YANG ET AL . Biological Journal of the Linnean Society, 2007, 90, 37–48. With 4 figures Reproductive isolation of two sympatric louseworts, Pedicularis rhinanthoides and Pedicularis longiflora (Orobanchaceae): how does the same pollinator type avoid interspecific pollen transfer? CHUN-FENG YANG, ROBERT W. GITURU† and YOU-HAO GUO* College of Life Sciences, Wuhan University, Wuhan 430072, People’s Republic of China Received 11 April 2005; accepted for publication 1 March 2006 To study the isolation mechanism of two commonly intermingled louseworts, Pedicularis rhinanthoides and Pedic- ularis longiflora, pollination biology in three mixed populations with the two species was investigated during a 3- year project. The results indicated that higher flowering density could help to enhance pollinator activity, and thus increase reproductive output. Bumblebees are the exclusive pollinator for the two louseworts and are essential for their reproductive success. Reproductive isolation between the two species is achieved by a combination of pre- and postzygotic isolation mechanisms. Although both species are pollinated by bumblebees, the present study indicates they successfully avoid interspecific pollen transfer due to floral isolation. Mechanical isolation is achieved by the stigma in the two species picking up pollen from different parts of the pollinator’s body, whereas ethological isolation occurs due to flower constancy. Additionally, strong postzygotic isolation was demonstrated by non seed set after arti- ficial cross-pollination even with successful pollen tube growth. We describe the hitherto unreported role of variation in the tightness and direction of the twist of the corolla beak in maintaining mechanical isolation between Pedicu- laris species. -
The Mesozoic Era Alvarez, W.(1997)
Alles Introductory Biology: Illustrated Lecture Presentations Instructor David L. Alles Western Washington University ----------------------- Part Three: The Integration of Biological Knowledge Vertebrate Evolution in the Late Paleozoic and Mesozoic Eras ----------------------- Vertebrate Evolution in the Late Paleozoic and Mesozoic • Amphibians to Reptiles Internal Fertilization, the Amniotic Egg, and a Water-Tight Skin • The Adaptive Radiation of Reptiles from Scales to Hair and Feathers • Therapsids to Mammals • Dinosaurs to Birds Ectothermy to Endothermy The Evolution of Reptiles The Phanerozoic Eon 444 365 251 Paleozoic Era 542 m.y.a. 488 416 360 299 Camb. Ordov. Sil. Devo. Carbon. Perm. Cambrian Pikaia Fish Fish First First Explosion w/o jaws w/ jaws Amphibians Reptiles 210 65 Mesozoic Era 251 200 180 150 145 Triassic Jurassic Cretaceous First First First T. rex Dinosaurs Mammals Birds Cenozoic Era Last Ice Age 65 56 34 23 5 1.8 0.01 Paleo. Eocene Oligo. Miocene Plio. Ple. Present Early Primate First New First First Modern Cantius World Monkeys Apes Hominins Humans A modern Amphibian—the toad A modern day Reptile—a skink, note the finely outlined scales. A Comparison of Amphibian and Reptile Reproduction The oldest known reptile is Hylonomus lyelli dating to ~ 320 m.y.a.. The earliest or stem reptiles radiated into therapsids leading to mammals, and archosaurs leading to all the other reptile groups including the thecodontians, ancestors of the dinosaurs. Dimetrodon, a Mammal-like Reptile of the Early Permian Dicynodonts were a group of therapsids of the late Permian. Web Reference http://www.museums.org.za/sam/resource/palaeo/cluver/index.html Therapsids experienced an adaptive radiation during the Permian, but suffered heavy extinctions during the end Permian mass extinction. -
Genetic Structure and Eco-Geographical Differentiation of Lancea Tibetica in the Qinghai-Tibetan Plateau
G C A T T A C G G C A T genes Article Genetic Structure and Eco-Geographical Differentiation of Lancea tibetica in the Qinghai-Tibetan Plateau Xiaofeng Chi 1,2 , Faqi Zhang 1,2,* , Qingbo Gao 1,2, Rui Xing 1,2 and Shilong Chen 1,2,* 1 Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining 810001, China; [email protected] (X.C.); [email protected] (Q.G.); [email protected] (R.X.) 2 Qinghai Provincial Key Laboratory of Crop Molecular Breeding, Xining 810001, China * Correspondence: [email protected] (F.Z.); [email protected] (S.C.) Received: 14 December 2018; Accepted: 24 January 2019; Published: 29 January 2019 Abstract: The uplift of the Qinghai-Tibetan Plateau (QTP) had a profound impact on the plant speciation rate and genetic diversity. High genetic diversity ensures that species can survive and adapt in the face of geographical and environmental changes. The Tanggula Mountains, located in the central of the QTP, have unique geographical significance. The aim of this study was to investigate the effect of the Tanggula Mountains as a geographical barrier on plant genetic diversity and structure by using Lancea tibetica. A total of 456 individuals from 31 populations were analyzed using eight pairs of microsatellite makers. The total number of alleles was 55 and the number per locus ranged from 3 to 11 with an average of 6.875. The polymorphism information content (PIC) values ranged from 0.2693 to 0.7761 with an average of 0.4378 indicating that the eight microsatellite makers were efficient for distinguishing genotypes. -
A Fundamental Precambrian–Phanerozoic Shift in Earth's Glacial
Tectonophysics 375 (2003) 353–385 www.elsevier.com/locate/tecto A fundamental Precambrian–Phanerozoic shift in earth’s glacial style? D.A.D. Evans* Department of Geology and Geophysics, Yale University, P.O. Box 208109, 210 Whitney Avenue, New Haven, CT 06520-8109, USA Received 24 May 2002; received in revised form 25 March 2003; accepted 5 June 2003 Abstract It has recently been found that Neoproterozoic glaciogenic sediments were deposited mainly at low paleolatitudes, in marked qualitative contrast to their Pleistocene counterparts. Several competing models vie for explanation of this unusual paleoclimatic record, most notably the high-obliquity hypothesis and varying degrees of the snowball Earth scenario. The present study quantitatively compiles the global distributions of Miocene–Pleistocene glaciogenic deposits and paleomagnetically derived paleolatitudes for Late Devonian–Permian, Ordovician–Silurian, Neoproterozoic, and Paleoproterozoic glaciogenic rocks. Whereas high depositional latitudes dominate all Phanerozoic ice ages, exclusively low paleolatitudes characterize both of the major Precambrian glacial epochs. Transition between these modes occurred within a 100-My interval, precisely coeval with the Neoproterozoic–Cambrian ‘‘explosion’’ of metazoan diversity. Glaciation is much more common since 750 Ma than in the preceding sedimentary record, an observation that cannot be ascribed merely to preservation. These patterns suggest an overall cooling of Earth’s longterm climate, superimposed by developing regulatory feedbacks -
Behavioural Mechanisms of Reproductive Isolation Between Two Hybridizing Dung Fly Species
Animal Behaviour 132 (2017) 155e166 Contents lists available at ScienceDirect Animal Behaviour journal homepage: www.elsevier.com/locate/anbehav Behavioural mechanisms of reproductive isolation between two hybridizing dung fly species * Athene Giesen , Wolf U. Blanckenhorn, Martin A. Schafer€ Institute of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland article info Characterization of the phenotypic differentiation and genetic basis of traits that can contribute to Article history: reproductive isolation is an important avenue to understand the mechanisms of speciation. We quan- Received 29 November 2016 tified the degree of prezygotic isolation and geographical variation in mating behaviour among four Initial acceptance 26 January 2017 populations of Sepsis neocynipsea that occur in allopatry, parapatry or sympatry with four populations of Final acceptance 21 June 2017 its sister species Sepsis cynipsea. To obtain insights into the quantitative genetic basis and the role of selection against hybrid phenotypes we also investigated mating behaviour of F1 hybrid offspring and MS. number: 16-01039R corresponding backcrosses with the parental populations. Our study documents successful hybridization under laboratory conditions, with low copulation frequencies in heterospecific pairings but higher fre- Keywords: quencies in pairings of F1 hybrids signifying hybrid vigour. Analyses of F1 offspring and their parental biogeography backcrosses provided little evidence for sexual selection against hybrids. -
Allopatric Speciation with Little Niche Divergence Is Common Among
Journal of Biogeography (J. Biogeogr.) (2016) 43, 591–602 ORIGINAL Allopatric speciation with little niche ARTICLE divergence is common among alpine Primulaceae Florian C. Boucher1*, Niklaus E. Zimmermann2,3 and Elena Conti1 1Institute of Systematic Botany, University of ABSTRACT Zurich,€ 8008 Zurich,€ Switzerland, 2Dynamic Aim Despite the accumulation of cases describing fast radiations of alpine Macroecology, Swiss Federal Research plants, we still have limited understanding of the drivers of speciation in alpine Institute WSL, 8903 Birmensdorf, Switzerland, 3Department of Environmental floras and of the precise the timing of their diversification. Here, we investi- Systems Science, Swiss Federal Institute of gated spatial and temporal patterns of speciation in three groups of alpine Technology ETH, CH-8092 Zurich,€ Primulaceae. Switzerland Location Mountains of the European Alpine System. Methods We built a new phylogeny of Primulaceae including all species in three focal groups: Androsace sect. Aretia, Primula sect. Auricula and Soldanella. Combining phylogenetic information with a detailed climatic data set, we investigated patterns of range and ecological overlap between sister-species using an approach that takes phylogenetic uncertainty into account. Finally, we investigated temporal trajectories of diversification in the three focal groups. Results We found that a large majority of sister-species pairs in the three groups are strictly allopatric and show little differences in substrate and cli- matic preferences, a result that was robust to phylogenetic uncertainty. While rates of diversification have remained constant in Soldanella, both Androsace sect. Aretia and Primula sect. Auricula showed decreased diversification rates in the Pleistocene compared to previous geological epochs. Main conclusions Allopatric speciation with little niche divergence appears to have been by far the most common mode of speciation across the three groups studied. -
10 What Is a Species? Investigation • 3–4 C L a S S S E S S I O N S
10 What Is a Species? investigation • 3–4 c l a s s s e s s i o n s OVERVIEW MatERIals and adVanCE PREPaRatIOn In this activity students learn about the biological species For the teacher concept in defining species and how it provides information transparency of Scoring Guide: GROUP INTERACTION (GI) about where new species are in the process of separation transparency of Scoring Guide: UNDERSTANDING from closely related species. Students then investigate the CONCEPTS (UC) factors that lead to reproductive isolation of species. For each group of four students set of 14 Species Pairs Cards KEy COntEnt set of 8 Reproductive Barrier Cards 1. Species evolve over time. The millions of species that live chart paper* (optional) on the earth today are related by descent from common markers* (optional) ancestors. For each student 2. Taxa are classified in a hierarchy of groups and sub- Student Sheet 10.1, “Supporting a Scientific Argument” groups based on genealogical relationships. (optional) 3. The broad patterns of behavior exhibited by animals Scoring Guide: GROUP INTERACTION (GI) (optional) have evolved by natural selection as a result of reproduc- Scoring Guide: UNDERSTANDING CONCEPTS (UC) tive success. (optional) 4. Scientists have found that the original definition of spe- *Not supplied in kit cies as groups of organisms with similar morphology Decide in advance if you will hand out Student Sheet does not reflect underlying evolutionary processes. 10.1,“Supporting a Scientific Argument,” or have students 5. The biological species concept defines a species as a pop- record this information in their science notebooks.