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Organometrallic Chemistry
CHE 425: ORGANOMETALLIC CHEMISTRY SOURCE: OPEN ACCESS FROM INTERNET; Striver and Atkins Inorganic Chemistry Lecturer: Prof. O. G. Adeyemi ORGANOMETALLIC CHEMISTRY Definitions: Organometallic compounds are compounds that possess one or more metal-carbon bond. The bond must be “ionic or covalent, localized or delocalized between one or more carbon atoms of an organic group or molecule and a transition, lanthanide, actinide, or main group metal atom.” Organometallic chemistry is often described as a bridge between organic and inorganic chemistry. Organometallic compounds are very important in the chemical industry, as a number of them are used as industrial catalysts and as a route to synthesizing drugs that would not have been possible using purely organic synthetic routes. Coordinative unsaturation is a term used to describe a complex that has one or more open coordination sites where another ligand can be accommodated. Coordinative unsaturation is a very important concept in organotrasition metal chemistry. Hapticity of a ligand is the number of atoms that are directly bonded to the metal centre. Hapticity is denoted with a Greek letter η (eta) and the number of bonds a ligand has with a metal centre is indicated as a superscript, thus η1, η2, η3, ηn for hapticity 1, 2, 3, and n respectively. Bridging ligands are normally preceded by μ, with a subscript to indicate the number of metal centres it bridges, e.g. μ2–CO for a CO that bridges two metal centres. Ambidentate ligands are polydentate ligands that can coordinate to the metal centre through one or more atoms. – – – For example CN can coordinate via C or N; SCN via S or N; NO2 via N or N. -
Graphene Supported Rhodium Nanoparticles for Enhanced Electrocatalytic Hydrogen Evolution Reaction Ameerunisha Begum1*, Moumita Bose2 & Golam Moula2
www.nature.com/scientificreports OPEN Graphene Supported Rhodium Nanoparticles for Enhanced Electrocatalytic Hydrogen Evolution Reaction Ameerunisha Begum1*, Moumita Bose2 & Golam Moula2 Current research on catalysts for proton exchange membrane fuel cells (PEMFC) is based on obtaining higher catalytic activity than platinum particle catalysts on porous carbon. In search of a more sustainable catalyst other than platinum for the catalytic conversion of water to hydrogen gas, a series of nanoparticles of transition metals viz., Rh, Co, Fe, Pt and their composites with functionalized graphene such as RhNPs@f-graphene, CoNPs@f-graphene, PtNPs@f-graphene were synthesized and characterized by SEM and TEM techniques. The SEM analysis indicates that the texture of RhNPs@f- graphene resemble the dispersion of water droplets on lotus leaf. TEM analysis indicates that RhNPs of <10 nm diameter are dispersed on the surface of f-graphene. The air-stable NPs and nanocomposites were used as electrocatalyts for conversion of acidic water to hydrogen gas. The composite RhNPs@f- graphene catalyses hydrogen gas evolution from water containing p-toluene sulphonic acid (p-TsOH) at an onset reduction potential, Ep, −0.117 V which is less than that of PtNPs@f-graphene (Ep, −0.380 V) under identical experimental conditions whereas the onset potential of CoNPs@f-graphene was at Ep, −0.97 V and the FeNPs@f-graphene displayed onset potential at Ep, −1.58 V. The pure rhodium nanoparticles, RhNPs also electrocatalyse at Ep, −0.186 V compared with that of PtNPs at Ep, −0.36 V and that of CoNPs at Ep, −0.98 V. -
Understanding the Invisible Hands of Sample Preparation for Cryo-EM
FOCUS | REVIEW ARTICLE FOCUS | REVIEWhttps://doi.org/10.1038/s41592-021-01130-6 ARTICLE Understanding the invisible hands of sample preparation for cryo-EM Giulia Weissenberger1,2,3, Rene J. M. Henderikx1,2,3 and Peter J. Peters 2 ✉ Cryo-electron microscopy (cryo-EM) is rapidly becoming an attractive method in the field of structural biology. With the exploding popularity of cryo-EM, sample preparation must evolve to prevent congestion in the workflow. The dire need for improved microscopy samples has led to a diversification of methods. This Review aims to categorize and explain the principles behind various techniques in the preparation of vitrified samples for the electron microscope. Various aspects and challenges in the workflow are discussed, from sample optimization and carriers to deposition and vitrification. Reliable and versatile specimen preparation remains a challenge, and we hope to give guidelines and posit future directions for improvement. ryo-EM is providing macromolecular structures with the optimum biochemical state of the sample. Grid preparation up to atomic resolution at an unprecedented rate. In this describes the steps needed to make a sample suitable for analysis Ctechnique, electron microscopy images of biomolecules in the microscope. These steps involve chemical or plasma treat- embedded in vitreous, glass-like ice are combined to generate ment of the grid, sample deposition and vitrification. The first three-dimensional (3D) reconstructions. The detailed structural breakthroughs came about from a manual blot-and-plunge method models obtained from these reconstructions grant insight into the developed in the 1980s15 that is still being applied to achieve formi- function of macromole cules and their role in biological processes. -
18- Electron Rule. 18 Electron Rule Cont’D Recall That for MAIN GROUP Elements the Octet Rule Is Used to Predict the Formulae of Covalent Compounds
18- Electron Rule. 18 Electron Rule cont’d Recall that for MAIN GROUP elements the octet rule is used to predict the formulae of covalent compounds. Example 1. This rule assumes that the central atom in a compound will make bonds such Oxidation state of Co? [Co(NH ) ]+3 that the total number of electrons around the central atom is 8. THIS IS THE 3 6 Electron configuration of Co? MAXIMUM CAPACITY OF THE s and p orbitals. Electrons from Ligands? Electrons from Co? This rule is only valid for Total electrons? Period 2 nonmetallic elements. Example 2. Oxidation state of Fe? The 18-electron Rule is based on a similar concept. Electron configuration of Fe? [Fe(CO) ] The central TM can accommodate electrons in the s, p, and d orbitals. 5 Electrons from Ligands? Electrons from Fe? s (2) , p (6) , and d (10) = maximum of 18 Total electrons? This means that a TM can add electrons from Lewis Bases (or ligands) in What can the EAN rule tell us about [Fe(CO)5]? addition to its valence electrons to a total of 18. It can’t occur…… 20-electron complex. This is also known Effective Atomic Number (EAN) Rule Note that it only applies to metals with low oxidation states. 1 2 Sandwich Compounds Obeying EAN EAN Summary 1. Works well only for d-block metals. It does not apply to f-block Let’s draw some structures and see some new ligands. metals. 2. Works best for compounds with TMs of low ox. state. Each of these ligands is π-bonded above and below the metal center. -
Aromaticity in Polyhydride Complexes of Ru, Ir, Os, and Pt† Cite This: DOI: 10.1039/C5cp04330a Elisa Jimenez-Izala and Anastassia N
PCCP View Article Online PAPER View Journal r-Aromaticity in polyhydride complexes of Ru, Ir, Os, and Pt† Cite this: DOI: 10.1039/c5cp04330a Elisa Jimenez-Izala and Anastassia N. Alexandrova*ab Transition-metal hydrides represent a unique class of compounds, which are essential for catalysis, organic i À i À synthesis, and hydrogen storage. In this work we study IrH5(PPh3)2,(RuH5(P Pr3)2) ,(OsH5(PPr3)2) ,and À OsH4(PPhMe2)3 polyhydride complexes, inspired by the recent discovery of the s-aromatic PtZnH5 cluster À anion. The distinctive feature of these molecules is that, like in the PtZnH5 cluster, the metal is five-fold Received 23rd July 2015, coordinated in-plane, and holds additional ligands attheaxialpositions.Thisworkshowsthattheunusual Accepted 17th September 2015 coordination in these compounds indeed can be explained by s-aromaticity in the pentagonal arrangement, DOI: 10.1039/c5cp04330a stabilized by the atomic orbitals on the metal. Based on this newly elucidated bonding principle, we additionally propose a new family of polyhydrides that display a uniquely high coordination. We also report the first www.rsc.org/pccp indications of how aromaticity may impact the reactivity of these molecules. 1 Introduction many catalytic cycles, where they have either been used as catalysts or invoked as key intermediates.15,16 Aromaticity in Aromaticity is a very important concept in the contemporary general is associated with high symmetry, stability, and specific chemistry: the particular electronic structure of aromatic reactivity. Therefore, the stability of transition-metal hydride systems, where electrons are delocalized, explains their large complexes might have an important repercussion in the kinetics energetic stabilization and low reactivity. -
Representation of Three-Center−Two-Electron Bonds in Covalent Molecules with Bridging Hydrogen Atoms Gerard Parkin*
Article Cite This: J. Chem. Educ. 2019, 96, 2467−2475 pubs.acs.org/jchemeduc Representation of Three-Center−Two-Electron Bonds in Covalent Molecules with Bridging Hydrogen Atoms Gerard Parkin* Department of Chemistry, Columbia University, New York, New York 10027, United States *S Supporting Information ABSTRACT: Many compounds can be represented well in terms of the two-center−two-electron (2c−2e) bond model. However, it is well-known that this approach has limitations; for example, certain compounds require the use of three- center−two-electron (3c−2e) bonds to provide an adequate description of the bonding. Although a classic example of a compound that features a 3c−2e bond is provided by − fi diborane, B2H6,3c 2e interactions also feature prominently in transition metal chemistry, as exempli ed by bridging hydride compounds, agostic compounds, dihydrogen complexes, and hydrocarbon and silane σ-complexes. In addition to being able to identify the different types of bonds (2c−2e and 3c−2e) present in a molecule, it is essential to be able to utilize these models to evaluate the chemical reasonableness of a molecule by applying the octet and 18-electron rules; however, to do so requires determination of the electron counts of atoms in molecules. Although this is easily achieved for molecules that possess only 2c− 2e bonds, the situation is more complex for those that possess 3c−2e bonds. Therefore, this article describes a convenient approach for representing 3c−2e interactions in a manner that facilitates the electron counting procedure for such compounds. In particular, specific attention is devoted to the use of the half-arrow formalism to represent 3c−2e interactions in compounds with bridging hydrogen atoms. -
Anagostic Interactions Under Pressure: Attractive Or Repulsive? Wolfgang Scherer *[A], Andrew C
Manuscript Click here to download Manuscript: manuscript_final.pdf ((Attractive or repulsive?)) DOI: 10.1002/anie.200((will be filled in by the editorial staff)) Anagostic Interactions under Pressure: Attractive or Repulsive? Wolfgang Scherer *[a], Andrew C. Dunbar [a], José E. Barquera-Lozada [a], Dominik Schmitz [a], Georg Eickerling [a], Daniel Kratzert [b], Dietmar Stalke [b], Arianna Lanza [c,d], Piero Macchi*[c], Nicola P. M. Casati [d], Jihaan Ebad-Allah [a] and Christine Kuntscher [a] The term “anagostic interactions” was coined in 1990 by Lippard preagostic interactions are considered to lack any “involvement of 2 and coworkers to distinguish sterically enforced M•••H-C contacts dz orbitals in M•••H-C interactions” and rely mainly on M(dxz, yz) (M = Pd, Pt) in square-planar transition metal d8 complexes from o V (C-H) S-back donation.[3b] attractive, agostic interactions.[1a] This classification raised the fundamental question whether axial M•••H-C interaction in planar The first observation of unusual axial M•••H-C interaction in 8 8 d -ML4 complexes represent (i) repulsive anagostic 3c-4e M•••H-C planar d -ML4 complexes was made by S. Trofimenko, who interactions[1] (Scheme 1a) or (ii) attractive 3c-4e M•••H-C pioneered the chemistry of transition metal pyrazolylborato hydrogen bonds[2] (Scheme 1b) in which the transition metal plays complexes.[5,6] Trofimenko also realized in 1968, on the basis of the role of a hydrogen-bond acceptor (Scheme 1b). The latter NMR studies, that the shift of the pseudo axial methylene protons in 3 bonding description is related to another bonding concept which the agostic species [Mo{Et2B(pz)2}(K -allyl)(CO)2] (1) (pz = describes these M•••H-C contacts in terms of (iii) pregostic or pyrazolyl; allyl = H2CCHCH2) “is comparable in magnitude but [3] preagostic interactions (Scheme 1c) which are considered as being different in direction from that observed in Ni[Et2B(pz)2]2” (2) “on the way to becoming agostic, or agostic of the weak type”.[4] (Scheme 2).[6,7] Scheme 1. -
Organometallics Study Meeting H.Mitsunuma 1
04/21/2011 Organometallics Study Meeting H.Mitsunuma 1. Crystal field theory (CFT) and ligand field theory (LFT) CFT: interaction between positively charged metal cation and negative charge on the non-bonding electrons of the ligand LFT: molecular orbital theory (back donation...etc) Octahedral (figure 9-1a) d-electrons closer to the ligands will have a higher energy than those further away which results in the d-orbitals splitting in energy. ligand field splitting parameter ( 0): energy between eg orbital and t2g orbital 1) high oxidation state 2) 3d<4d<5d 3) spectrochemical series I-< Br-< S2-< SCN-< Cl-< N -,F-< (H N) CO, OH-< ox, O2-< H O< NCS- <C H N, NH < H NCH CH NH < bpy, phen< NO - - - - 3 2 2 2 5 5 3 2 2 2 2 2 < CH3 ,C6H5 < CN <CO cf) pairing energy: energy cost of placing an electron into an already singly occupied orbital Low spin: If 0 is large, then the lower energy orbitals(t2g) are completely filled before population of the higher orbitals(eg) High spin: If 0 is small enough then it is easier to put electrons into the higher energy orbitals than it is to put two into the same low-energy orbital, because of the repulsion resulting from matching two electrons in the same orbital 3 n ex) (t2g) (eg) (n= 1,2) Tetrahedral (figure 9-1b), Square planar (figure 9-1c) LFT (figure 9-3, 9-4) - - Cl , Br : lower 0 (figure 9-4 a) CO: higher 0 (figure 9-4 b) 2. Ligand metal complex hapticity formal chargeelectron donation metal complex hapticity formal chargeelectron donation MR alkyl 1 -1 2 6-arene 6 0 6 MH hydride 1 -1 2 M MX H 1 -1 2 halogen 1 -1 2 M M -hydride M OR alkoxide 1 -1 2 X 1 -1 4 M M -halogen O R acyl 1 -1 2 O 1 -1 4 M R M M -alkoxide O 1-alkenyl 1 -1 2 C -carbonyl 1 0 2 M M M R2 C -alkylidene 1 -2 4 1-allyl 1 -1 2 M M M O C 3-carbonyl 1 0 2 M R acetylide 1 -1 2 MMM R R C 3-alkylidine 1 -3 6 M carbene 1 0 2 MMM R R M carbene 1 -2 4 R M carbyne 1 -3 6 M CO carbonyl 1 0 2 M 2-alkene 2 0 2 M 2-alkyne 2 0 2 M 3-allyl 3 -1 4 M 4-diene 4 0 4 5 -cyclo 5 -1 6 M pentadienyl 1 3. -
Agostic Interaction and Intramolecular Proton Transfer from the Protonation
Agostic interaction and intramolecular proton SPECIAL FEATURE transfer from the protonation of dihydrogen ortho metalated ruthenium complexes Andrew Toner†, Jochen Matthes†‡, Stephan Gru¨ ndemann‡, Hans-Heinrich Limbach‡, Bruno Chaudret†, Eric Clot§, and Sylviane Sabo-Etienne†¶ †Laboratoire de Chimie de Coordination du Centre National de la Recherche Scientifique, Associe´a` l’Universite´Paul Sabatier, 205 route de Narbonne, 31077 Toulouse Cedex 04, France; ‡Institute of Chemistry, Freie Universita¨t Berlin, Takustrasse 3, D-14195 Berlin, Germany; and §Laboratoire de Structure et Dynamique des Syste`mes Mole´culaires et Solides (Centre National de la Recherche Scientifique, Unite´Mixte de Recherche 5253), Institut Charles Gerhardt, case courrier 14, Universite´Montpellier II, Place Euge`ne Bataillon, 34000 Montpellier, France Edited by Jay A. Labinger, California Institute of Technology, Pasadena, CA, and accepted by the Editorial Board January 17, 2007 (received for review October 13, 2006) Protonation of the ortho-metalated ruthenium complexes insertion of an olefin into the aromatic C–H bond ortho to an i phenylpyridine (ph-py) (1), benzoquinoline activating ketone group (Eq. 1) (30). In this system, the key-2 ؍ RuH(H2)(X)(P Pr3)2 [X i ؉ ؊ bq) (2)] and RuH(CO)(ph-py)(P Pr3)2 (3) with [H(OEt2)2] [BAr4] intermediate is an ortho-metalated complex resulting from ortho) CF3)2C6H3)4B]) under H2 atmosphere yields the corre- C–H bond activation, thanks to chelating assistance with the donor)-3,5)] ؍ BAr4) sponding cationic hydrido dihydrogen ruthenium complexes group. Coordination of the olefin, olefin insertion into Ru–H and i phenylpyridine (ph-py) (1-H); ben- C–C coupling are the subsequent steps needed to close the catalytic ؍RuH(H2)(H-X)(P Pr3)2][BAr4][X] zoquinoline (bq) (2-H)] and the carbonyl complex [RuH(CO)(H-ph- cycle as proposed by Kakiuchi and Murai (8). -
Oxidation State & Electron Counting
Formalisms – Oxidation State & Electron Counting Understanding the nature of the metal center is critical in understanding how it reacts. There are four things we need to know: (1) The oxidation state of the metal (2) The number of d electrons on the metal in that oxidation state (3) The coordination number of the metal (4) The availability (or lack thereof) of any coordination sites on the metal Oxidation State – The charge left on the metal after all ligands have been removed in their normal, closed shell, configuration. There are two ways to figure out the oxidation state. The one we will use involves breaking the metal–ligand bonds heterolytically with both electrons going with the ligand. Examples: M Cl M Cl (+1) M H M H M CO M CO (+1) (0) M PPh3 M PPh3 (0) H H H H OR OR M M M M M M (+1) H H (0) H H R (0) R Formalisms – Oxidation State & Electron Counting Now that we know the oxidation state of the metal we can figure out the d-electron count. This can be done easily by consulting the periodic table. The 4s and 3d orbitals are very close in energy and for complexes of transition metals it is a good approximation that the d orbitals are filled first. Group # 4 5 6 7 8 9 10 11 First row 3d Ti V Cr Mn Fe Co Ni Cu Second row 4d Zr Nb Mo Tc Ru Rh Pd Ag Third row 5d Hf Ta W Re Os Ir Pt Au 0 4 5 6 7 8 9 10 – I 3 4 5 6 7 8 9 10 oxidation state II 2 3 4 5 6 7 8 9 III 1 2 3 4 5 6 7 8 IV 0 1 2 3 4 5 6 7 # of d-electrons Formalisms – Oxidation State & Electron Counting Why is knowing the number of d-electrons important? 18 electron rule – In mononuclear diamagnetic complexes, the toal number of electrons in the bonding shell (the sum of the metal d electrons plus those contributed by the ligands) never exceeds 18. -
Lecture 2--2016
Chem 462 Lecture 2--2016 z [MLnXm] Classification of Ligands Metal Oxidation States Electron Counting Overview of Transition Metal Complexes 1.The coordinate covalent or dative bond applies in L:M 2.Lewis bases are called LIGANDS—all serve as σ-donors some are π-donors as well, and some are π-acceptors 3. Specific coordination number and geometries depend on metal and number of d-electrons 4. HSAB theory useful z [MLnXm] a) Hard bases stabilize high oxidation states b) Soft bases stabilize low oxidation states Classification of Ligands: The L, X, Z Approach Malcolm Green : The CBC Method (or Covalent Bond Classification) used extensively in organometallic chemistry. L ligands are derived from charge-neutral precursors: NH3, amines, N-heterocycles such as pyridine, PR3, CO, alkenes etc. X ligands are derived from anionic precursors: halides, hydroxide, alkoxide alkyls—species that are one-electron neutral ligands, but two electron 4- donors as anionic ligands. EDTA is classified as an L2X4 ligand, features four anions and two neutral donor sites. C5H5 is classified an L2X ligand. Z ligands are RARE. They accept two electrons from the metal center. They donate none. The “ligand” is a Lewis Acid that accepts electrons rather than the Lewis Bases of the X and L ligands that donate electrons. Here, z = charge on the complex unit. z [MLnXm] octahedral Square pyramidal Trigonal bi- pyramidal Tetrahedral Range of Oxidation States in 3d Transition Metals Summary: Classification of Ligands, II: type of donor orbitals involved: σ; σ + π; σ + π*; π+ π* Ligands, Classification I, continued Electron Counting and the famous Sidgewick epiphany Two methods: 1) Neutral ligand (no ligand carries a charge—therefore X ligands are one electron donors, L ligands are 2 electron donors.) 2) Both L and X are 2-electron donor ligand (ionic method) Applying the Ionic or 2-electron donor method: Oxidative addition of H2 to chloro carbonyl bis triphenylphosphine Iridium(I) yields Chloro-dihydrido-carbonyl bis-triphenylphosphine Iridium(III). -
20 Catalysis and Organometallic Chemistry of Monometallic Species
20 Catalysis and organometallic chemistry of monometallic species Richard E. Douthwaite Department of Chemistry, University of York, Heslington, York, UK YO10 5DD Organometallic chemistry reported in 2003 again demonstrated the breadth of interest and application of this core chemical field. Significant discoveries and developments were reported particularly in the application and understanding of organometallic compounds in catalysis. Highlights include the continued develop- ment of catalytic reactions incorporating C–H activation processes, the demonstra- 1 tion of inverted electronic dependence in ligand substitution of palladium(0), and the synthesis of the first early-transition metal perfluoroalkyl complexes.2 1 Introduction A number of relevant reviews and collections of research papers spanning the transition metal series were published in 2003. The 50th anniversary of Ziegler catalysis was commemorated3,4 and a survey of metal mediated polymerisation using non-metallocene catalysts surveyed.5 Journal issues dedicated to selected topics included metal–carbon multiple bonds and related organometallics,6 developments in the reactivity of metal allyl and alkyl complexes,7 metal alkynyls,8 and carbon rich organometallic compounds including 1.9 Reviews of catalytic reactions using well-defined precatalyst complexes include alkene ring-closing and opening methathesis using molybdenum and tungsten imido DOI: 10.1039/b311797a Annu. Rep. Prog. Chem., Sect. A, 2004, 100, 385–406 385 alkylidene precatalysts,10 chiral organometallic half-sandwich