Life's Origins

Total Page:16

File Type:pdf, Size:1020Kb

Life's Origins THE SEARCH FOR LIFE'S ORIGINS Progress and Future Directions in Planetary Biology and Chemical Evolution SPACE STUDIES BOARD Committee on Planetary Biology and Chemical Evolution Commission on Physical Sciences, Mathematics, and Applications National Research Council (NASA-CR-190929) THE SEARCH FCR N93-11603 LIFF'S nRIGINS: PROGRESS AND FUTURE DTR_CTI_NS IN PLANETARY biOLOgY AND CHEMICAL FVOLUTION (NAS-NRC) Unclas i59 p G3191 0125180 NATIONAL ACADEMY PRESS Washington, D.C. 1990 NATIONAL ACADEMY PRESS - 2101 Constitution Avenue, N.W. • Washington, D.C. 20418 NOTICE: The project that is the subject of this report was approved by the Governing Board of the National l_esearch Council, whose members are drawn from the councils of the National Academy of Sciences, the National Academy of Engineering, and the Institute of Medicine. The members of the committee responsible for the report were chosen for their special compe- tences and with regard for appropriate balance. This report has been reviewed by a group other than the authors according to procedures approved by a Report Review Committee consisting of members of the National Academy of Sciences, the National Academy of Engineering, and the Institute of Medicine. Support for this project was provided by Contract NASW 4102 between the National Academy of Sciences and the National Aeronautics and Space Administration. Library of Congress Cataloging-in-Publication Data The Search for life's origins : progress and future directions in planetary biology and chemical evolution / Committee on Planetary Biology and Chemical Evolution. p. cm. Includes bibliographical references. Includes index. ISBN 0-309-04246-1 1. Life--Origin. 2. Space biology. 3. Chemical evolution. 1. National Research Council (U.S.). Committee on Planetary Biology and Chemical Evolution. QH325.$418 1990 577--dc20 90-36899 CIP Copyright © 1990 by the National Academy of Sciences No part of this book may be reproduced by any mechanical, photographic, or electronic process, or in the form of a phonographic recording, nor may it be stored in a retrieval system, transmitted, or otherwise copied for public or private use, without written permission from the publisher, except for the purposes of official use by the U.S. government. Printed in the United States of America COMMITTEE ON PLANETARY BIOLOGY AND CHEMICAL EVOLUTION HAROLD P. KLEIN, Santa Clara University, Chairman JOHN CRONIN, Arizona State University GEORGE FOX, University of Houston DIANA FRECKMAN, University of California at Riverside RICHARD HANSON, University of Minnesota HYMAN HARTMAN, University of California at Berkeley ERIC HERBST, Duke University WILLIAM IRVINE, University of Massachusetts JENNIFER KITCHELL, University of Michigan ANDREW KNOLL, Harvard University JOHN ORO, University of Houston TOBIAS OWEN, State University of New York at Stony Brook NORMAN PACE, Indiana University DAVID RAUP, University of Chicago WILLIAM REINERS, University of Wyoming NORMAN SLEEP, Stanford University JILL TARTER, University of California at Berkeley DAVID USHER, Cornell University ROBERT WOODMANSEE, Colorado State University Consultants SHERWOOD CHANG, NASA Ames Research Center BRUCE FEGLEY, JR., Massachusetts Institute of Technology MITCHELL SOGIN, National Jewish Center K. D. STEWART, Miami University XANDIER THIELENS, University of California at Berkeley CARL WOESE, University of Illinois MICHAEL YARUS, Colorado University Space Studies Board Staff JOYCE M. PURCELL, Executive Secretary MELAN1E M. GREEN, Secretary iii PRECED!NG PAGE BI.Ar4K NOT FILMED SPACE STUDIES BOARD LOUIS J. LANZEROTTI, AT&T Bell Laboratories, Chairman PHILIP ABELSON, American Association for the Advancement of Science JOSEPH A. BURNS, Cornell University JOHN R. CARRUTHERS, INTEL ANDREA K. DUPREE, Center for Astrophysics JOHN A. DUTTON, Pennsylvania State University LARRY W. ESPOSITO, University of Colorado JAMES P. FERRIS, Renssalear Polytechnic Institute HERBERT FRIEDMAN, Naval Research Laboratory RICHARD L. GARWIN, IBM T. J. Watson Research Center RICCARDO GIACCONI, Space Telescope Science Institute NOEL W. HINNERS, Martin Marietta Corporation JAMES R. HOUCK, Cornell University DAVID A. LANDGREBE, Purdue University JOHN W. LEIBACHER, National Solar Observatory ELLIOTT C. LEVINTHAL, Stanford University MICHAEL MENDILLO, Boston University WILLIAM J. MERRELL, JR., Texas A&M University RICHARD K. MOORE, University of Kansas ROBERT H. MOSER, NutraSweet Corporation NORMAN F. NESS, Bartol Research Institute MARCIA NEUGEBAUER, Jet Propulsion Laboratory JOSEPH M. REYNOLDS, Louisiana State University SALLY K. RIDE, California Space Institute ROBERT F. SEKERKA, Carnegie-Mellon University MARK SETTLE, ARCO Oil and Gas Company L. DENNIS SMITH, University of California at lrvine BYRON D. TAPLEY, Center for Space Research iv COMMISSION ON PHYSICAL SCIENCES, MATHEMATICS, AND APPLICATIONS* NORMAN HACKERMAN, Robert A. Welch Foundation, Chairman GEORGE F. CARR1ER, Harvard University HERBERT D. DOAN, The Dow Chemical Company (retired) DEAN E. EASTMAN, IBM T. J. Watson Research Center MARYE ANNE FOX, University of Texas GERHART FRIEDLANDER, Brookhaven National Laboratory PHILLIP A. GRIFFITHS, Duke University NEAL F. LANE, Rice University CHRISTOPHER F. MCKEE, University of California at Berkeley RICHARD S. NICHOLSON, American Association for the Advancement of Science JEREMIAH P. OSTRIKER, Princeton University Observatory ROY F. SCHWITTERS, Superconducting Super Collider Laboratory LARRY L. SMARR, University of Illinois at Urbana-Champaign NORMAN METZGER, Executive Director *The project that is the subject of this report was initiated under the predecessor group of the Commission on Physical Sciences, Mathematics, and Applications, which is the Commission on Physical Sciences, Mathematics, and Resources. whose members are listed in the appendix. The National Academy of Sciences is a private, nonprofit, self-perpetuating society of distinguished scholars engaged in scientific and engineering research, dedicated to the furtherance of science and technology and to their use for the general welfare. Upon the authority of the charter granted to it by the Congress in 1863. the Academy has a mandate that requires it to advise the federal government on scientific and technical matters. Dr. Frank Press is president of the National Academy of Sciences. The National Academy of Engineering was established in 1964, under the charter of the National Academy of Sciences, as a parallel organization of outstanding engineers. It is autonomous in its administration and in the selection of its members, sharing with the National Academy of Sciences the responsibility for advising the federal government, The National Academy of Engineering also sponsors engineering programs aimed at meeting national needs, encourages education and research, and recognizes the superior achievements of engineers. Dr. Robert M. White is president of the National Academy of Engineering. The Institute of Medicine was established in 1970 by the National Academy of Sciences to secure the services of eminent members of appropriate professions in the examination of policy matters pertaining to the health of the public. The Institute acts under the responsibility given to the National Academy of Sciences by its congressional charter to be an adviser to the federal government and, upon its own initiative, to identify issues of medical care, research, and education. Dr. Samuel O. Thier is president of the Institute of Medicine. The National Research Council was organized by the National Academy of Sciences in 1916 to associate the broad community of science and technology with the Academy's pur- poses of furthering knowledge and advising the federal government, Functioning in accor- dance with general policies determined by the Academy, the Council has become the principal operating agency of both the National Academy of Sciences and the National Academy of Engineering in providing services to the government, the public, and the scientific and engi- neering communities. The Council is administered jointly by both Academies and the Institute of Medicine. Dr. Frank Press and Dr. Robert M. White are chairman and vice chairman, respectively, of the National Research Council. vi Foreword One of the areas of interest to the Space Studies Board has long been the field of exobiology. This multidisciplinary endeavor seeks to understand the interactions between a developing and evolving biological system and the physical environments within which these evolutionary processes take place. Over the years, through its Committee on Planetary Biology and Chemical Evolution, the board has developed strategies for studies in this area, has evaluated the prospects for extant biology elsewhere in the solar system, and has provided guidelines for the protection, of both the Earth and other bodies, from the possible contamination resulting from space missions (Post-Viking Biological Investigations of Mars {1977]; Recom- mendations on Quarantine Polk_' for Mars, Jupiter, Saturn, Uranus, Nep- tune, and Titan [ 1978]; Origin and Evolution of Life--Implications for the Planets: A Scientific Strategy for the 1980s [19811). A decade has passed since the board last evaluated the status of this field--a decade during which many exciting new observations and discov- eries have been made, both in space missions and in ground-based laborato- ries and observatories. Among these may be cited new information from the Comet Halley, Voyager, and Infrared Astronomy Satellite missions; from
Recommended publications
  • GENERAL MEETING NORMAN SLEEP, Ph.D. Professor Of
    Vol. 63, No. 10 – October 2015 GENERAL MEETING THE PRESIDIO . OBSERVATION POST . BUILDING 211 211 Lincoln Boulevard, San Francisco 7:00 pm Doors Open . 7:30 pm Announcements . 8:00 pm Speaker SFAA’s General Meetings occur on the 3rd TUESDAY of each month (except January) October 20, 2015 NORMAN SLEEP, Ph.D. Professor of Geophysics, Stanford University OUR MOON FROM FORMATION TO ASTEROID TARGET: MESSAGE FOR LIFE ON EARTH The present Earth­Moon system formed in the aftermath of the impact of a Mars­ sized body on our planet. The Earth was then mostly melted and the Moon accreted from a ring of vapor and liquid orbiting the Earth. Part of the impactor’s core ended up in the Moon­forming disk around the Earth. Iron metal within the disk was partly oxidized by ferric iron and water. Metallic iron remained and this formed our Moon’s small core, and about 2% of the impactor’s core ended up within Earth’s mantle. It is conceivable that early asteroid bombardment on the Earth was relatively benign and that planet sterilizing impact never occurred. A dense CO2 atmosphere blanketed Earth within about 10 million years of the impact, and a solar­heated greenhouse maintained 200 degrees C temperatures at the surface. Earth did not become habitable until the CO2 subducted into the mantle. Subducted oceanic crust carried carbonates into the mantle, which partially melted beneath island arcs to form alkaline CO2­rich lavas. Groundwaters within these lavas are an attractive prebiotic environment. By the time of Earth’s earliest sedimentary record at about 3.8 billion years ago, the surface was clement, the ocean was near its current pH about 8, and the CO2 pressure in the air was comparable to the modern value.
    [Show full text]
  • Significant Achievements in the Planetary Geology Program 1977-1978
    NASA Contractor Report 3077 Significant Achievements in the Planetary Geology Program 1977-1978 DECEMBER 1978 NASA NASA Contractor Report 3077 Significant Achievements in the Planetary Geology Program 1977-1978 Prepared for NASA Office of Space Science NASA National Aeronautics and Space Administration Scientific and Technical Information Office 1978 James W. Head Editor Brown University Contributing Authors Fraser Fanale Elbert King Jet Propulsion Laboratory University of Houston Clark Chapman Paul Komar Planetary Science Institute Oregon State University Sean Solomon Gerald Schaber Massachusetts Institute of Technology U. S. Geological Survey Hugh Kieffer Roger Smith University of California-Los Angeles University of Houston James Stephens Mike Mai in Jet Propulsion Laboratory Jet Propulsion Laboratory Ray Batson Alex Woronow U. S. Geological Survey University of Arizona ii Table of Contents Introduction v Constraints on Solar System Formation 1 Asteroids, Comets, and Satellites 5 Constraints on Planetary Interiors 13 Volatiles and Regolith 16 Instrument Development Techniques 21 Planetary Cartography 23 Geological and Geochemical Constraints on Planetary Evolution 24 Fluvial Processes and Channel Formation 28 Volcanic Processes 35 Eolian Processes 38 Radar Studies of Planetary Surfaces 44 Cratering as a Process, Landform, and Dating Method 46 Workshop on the Tharsis Region of Mars 49 Planetary Geology Field Conference on Eolian Processes 52 Report of the Crater Analysis Techniques Working Group 53 111 Introduction The 9th annual meeting of the Planetary Geology Program Principal Investigators was held May 31 - June 2, 1978 in Tucson, Arizona at the University of Arizona. The papers presented there represented the high points of research carried out in the Planetary Geology Program of NASA's Office of Space Science, Division of Planetary Programs.
    [Show full text]
  • EARTHSCIENCES April 2014 News Notes
    SCHOOL OF EARTHSCIENCES April 2014 News Notes • Alumni Change Lives • Professor E. Scott Bair Retires • Faculty Profile: Michael Wilkins • Appalachian Field Geology for Educators • SES scores again at the Denman Undergraduate Research Forum • Brevia Alumni Change Lives Christina Zerda (BS 2014) received support from The Friends of Orton Hall fund. Here, Christina describes how this helped advance her career. The picture shows Christina with poster at the Denman Forum, where she won third place. I began my research with Dr. Barton my sophomore year without any knowledge of the subject or what I was getting into. Two years later, I am graduating with a BS with research distinction, a 3rd place finish in the 2014 Denman Forum, a successful poster presentation at AGU, and knowing I found my niche in geology. My re- search focuses on the magma chambers beneath the East Pacific Rise, which is a mid-ocean ridge in the Pacific Ocean off of the coast of Central America. We chose the EPR due to its fast spreading rate and the prominence of several transform faults in the northern section. Ultimately, we hope to better understand not only what affects these transforms and other features have upon oceanic crust petrology, but a better understanding of mid- ocean ridges in general. While we originally looked at the depths at which these rocks began the process of crystallization, focus eventually turned to the surface features of the ridge and their effect upon the pressures of partial crystalli- zation. What I think is the coolest aspect of this project and area of study is the challenge of it.
    [Show full text]
  • The Emerging Role of Ncrnas and RNA-Binding Proteins in Mitotic Apparatus Formation
    non-coding RNA Review The Emerging Role of ncRNAs and RNA-Binding Proteins in Mitotic Apparatus Formation Kei K. Ito, Koki Watanabe and Daiju Kitagawa * Department of Physiological Chemistry, Graduate School of Pharmaceutical Science, The University of Tokyo, Bunkyo, Tokyo 113-0033, Japan; [email protected] (K.K.I.); [email protected] (K.W.) * Correspondence: [email protected] Received: 11 November 2019; Accepted: 13 March 2020; Published: 20 March 2020 Abstract: Mounting experimental evidence shows that non-coding RNAs (ncRNAs) serve a wide variety of biological functions. Recent studies suggest that a part of ncRNAs are critically important for supporting the structure of subcellular architectures. Here, we summarize the current literature demonstrating the role of ncRNAs and RNA-binding proteins in regulating the assembly of mitotic apparatus, especially focusing on centrosomes, kinetochores, and mitotic spindles. Keywords: ncRNA; centrosome; kinetochore; mitotic spindle 1. Introduction Non-coding RNAs (ncRNAs) are defined as a class of RNA molecules that are transcribed from genomic DNA, but not translated into proteins. They are mainly classified into the following two categories according to their length—small RNA (<200 nt) and long non-coding RNA (lncRNA) (>200 nt). Small RNAs include traditional RNA molecules, such as transfer RNA (tRNA), small nuclear RNA (snRNA), small nucleolar RNA (snoRNA), PIWI-interacting RNA (piRNA), and micro RNA (miRNA), and they have been studied extensively [1]. Research on lncRNA is behind that on small RNA despite that recent transcriptome analysis has revealed that more than 120,000 lncRNAs are generated from the human genome [2–4].
    [Show full text]
  • HERPESVIRAL MICRORNAS by SUNANTHA SETHURAMAN A
    DEREGULATION OF HUMAN LONG NONCODING RNAS BY ONCOGENIC GAMMA- HERPESVIRAL MICRORNAS By SUNANTHA SETHURAMAN A DISSERTATION PRESENTED TO THE GRADUATE SCHOOL OF THE UNIVERSITY OF FLORIDA IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY UNIVERSITY OF FLORIDA 2017 © 2017 Sunantha Sethuraman To my parents, S Vijaya and K Sethuraman, and my brother S Srinivasan. ACKNOWLEDGMENTS I would like to acknowledge and thank all the people who have contributed directly and indirectly to my doctoral education and the work presented in this thesis. I would like to thank the members of the Renne laboratory, Dr. Rolf Renne, Dr. Peter Turner, Dr. Vaibhav Jain, Lauren Gay, Jackie Serfecz, Natalie Martinez and Merin Thomas, for making the lab an inspiring and fun environment. I am extremely thankful to my advisor Dr. Rolf Renne for being a mentor, a friend and a critique through the four years I have worked with him. I am also thankful to Dr. Peter Turner for carefully reviewing my manuscripts and this thesis. I would like to acknowledge the past members of the Renne laboratory, Dr. Irina Haecker and Dr. Hong Seok Choi. Dr. Irina Haecker is one of the most inspirational scientists I have met, who mentored me as a rotation student on the project that has now developed into my dissertation work. Dr. Hong Seok Choi, Dr. Vaibhav Jain and Lauren Gay have guided me with my experiments and made me a better scientist through the many scientific discussions. Jackie, Natalie and Merin have been amazing friends, and they make even a stressful day in the lab seem easy.
    [Show full text]
  • Preface the Turn of the 21St Century Ushered in an Upsurge Of
    Preface The turn of the 21st century ushered in an upsurge of questioning of contemporary visions of the nature of mantle convection and, most importantly, its link with surface volcanism. Since the early 1970s the mantle plume hypothesis had been the most popular explanation for volcanism apparently not explained by plate tectonics, including both large-volume magmatism and volcanism in regions not near to plate boundaries. The plume hypothesis, originally proposed by W.J. Morgan in 1971, provided a mechanism for the formation and sustaining of the “hot spot” in the mantle that J.T. Wilson had suggested in 1963 was the cause of the Hawaiian volcano chain. Morgan’s plume hypothesis envisaged a cylindrical column of hot rock rising from the deep mantle to continually feed the surface volcanism. Furthermore, approximately 20 such plumes were proposed to exist in the Earth. In addition to Hawaii, these were postulated to underlie Macdonald seamount, Easter island, the Galapagos. Juan Fernandez, Brazil, Yellowstone, Iceland, the Azores, the Canary Islands, Hoggar, Ascension island, Tristan da Cunha, the Bouvet triple junction, Crozet, Reunion, Kerguelen, Caroline seamount and Lord Howe. Plume theory provided an elegant explanation for time-progressive volcanic chains and relative fixity between melting anomalies. Major later expansions of the hypothesis included the proposals that plume development involves a plume-head/plume-tail sequence, represented by large igneous province formation followed by time-progressive volcanic chains, and that lower- mantle and core-mantle boundary geochemical tracers may be detected in hot spot basalts. More plumes than the original ~ 20 were proposed, popular lists typically containing 50 - 100 candidates.
    [Show full text]
  • The Rationale for a Long-Lived Geophysical
    THE RATIONALE FOR A LONG-LIVED GEOPHYSICAL NETWORK MISSION TO MARS Submitted to The Mars Panel, NRC Decadal Survey for the Planetary Sciences Division, SMD, NASA Phil Christensen, Chair; Wendy Calvin, Vice Chair Written by Bruce Banerdt JPL Robert Grimm SwRI Franck Montmessin Scot Rafkin SwRI Tilman Spohn DLR Matthias Grott DLR Service Aeronomie Peter Read Oxford Ulli Christensen MPS Bob Haberle NASA-Ames Yosio Nakamura Gerald Schubert UCLA Veronique Dehant ROB Martin Knapmeyer DLR U Texas (ret.) Sue Smrekar JPL Linda Elkins-Tanton MIT Philippe Lognonné IPGP Roger Phillips SwRI Mike Wilson JPL Endorsed by Oded Aharonson Caltech François Forget Kurt Klaus Boeing Thomas Ruedas Carnegie Don Albert CRREL CNRS-LMD Jörg Knollenberg DLR Chris Russell UCLA Carlton Allen NASA-JSC Matt Fouch ASU Naoki Kobayashi JAXA David Sandwell Scripps Robert Anderson JPL Brenda Franklin JPL Ulrich Koehler DLR Nicholas Schmerr Carnegie Scott Anderson SwRI Herbert Frey GSFC Carlos Lange U Alberta Nicole Schmitz DLR Jeff Andrews-Hanna Jeannine Gagnepain- Gary Latham DOE (ret.) Richard Schultz U Nevada Colo. School of Mines Beyneix IPGP Mark Leese Open U Mindi Searls U Colorado Jafar Arkani-Hamed Rafael Garcia Frank Lemoine GSFC Karsten Seiferlin U Bern McGill U Obs. Midi-Pyrenees Robert Lillis UC Berkeley Nikolai Shapiro IPGP Gabriele Arnold U Münster Jim Garvin GSFC John Longhi Charles Shearer UNM Sami Asmar JPL Rebecca Ghent U Toronto Lamont-Doherty Brian Shiro NOAA Lisa Baldwin DLR Domenico Giardini ETH Paul Lundgren JPL Mark Simons Caltech Don Banfield Cornell Lori Glaze GSFC Mioara Mandea GFZ Norman Sleep Stanford Amy Barr SwRI Matthew Golombek JPL Michael Manga John C.
    [Show full text]
  • The Michigan Basin
    UMR Journal -- V. H. McNutt Colloquium Series Volume 3 Article 4 December 1982 The Michigan Basin L. L. Sloss Follow this and additional works at: https://scholarsmine.mst.edu/umr-journal Part of the Geology Commons, and the Geophysics and Seismology Commons Recommended Citation Sloss, L. L. (1982) "The Michigan Basin," UMR Journal -- V. H. McNutt Colloquium Series: Vol. 3 , Article 4. Available at: https://scholarsmine.mst.edu/umr-journal/vol3/iss1/4 This Article - Journal is brought to you for free and open access by Scholars' Mine. It has been accepted for inclusion in UMR Journal -- V. H. McNutt Colloquium Series by an authorized administrator of Scholars' Mine. This work is protected by U. S. Copyright Law. Unauthorized use including reproduction for redistribution requires the permission of the copyright holder. For more information, please contact [email protected]. UMR Journal, No. 3 (December 1982) 25 The Michigan Basin L. L. SLOSS* ABSTRACT The Michigan basin is widely acknowledged to be the archetype among those basins of cratonic interiors whose subsidence is dominated by flexure rather than faulting. Broadly ovate in plan over an area of some hundreds of thousands of square kilometers, with a preserved Phanerozoic sediment thickness exceeding 4 km accumulated during distinct episodes of subsidence over a 500-million year span, the basin is endowed with significant fossil-fuel resources. The basin area is crossed, from north-northwest, by a rift zone filled with mafic igneous rock and great thickness of sedimentary rock resting on Archean and Middle Proterozoic crystallines. Rifting is presumably of Keweenawan age, but the igneous rocks cannot be dated more explicitly than “older than 600 myBP”.
    [Show full text]
  • Ngs and Bioinformatics
    FÉDÉRER LA RECHERCHE ET L’INNOVATION MÉDICALE EN CANCÉROLOGIE NGS AND BIOINFORMATICS Yannick BOURSIN Jean-Charles CADORET Marc DELOGER M’Boyba DIOP Pierre GESTRAUD www.canceropole-idf.fr Jean-François OUIMETTE NGS & Cancer : Analyses RNA-Seq Nicolas SERVANT 7, 8, 9 novembre 2018 2 Outline 1- INTRODUCTION a) Sequencing technologies b) Sequencing library technologies c) Bioinformatics part of sequencing projects d) The RNA world e) RNA-seq usage in oncology 2- QUALITY CONTROLS ON RAW READS a) Raw reads formats b) Quality controls 3- SHORT READS ALIGNMENT AND QUALITY CONTROL a) Reads alignment b) Alignment formats c) Quality controls on aligned data d) And then ? NGS & Cancer : Analyses RNA-Seq 7, 8, 9 novembre 2018 A short introduction SEQUENCING TECHNOLOGIES NGS & Cancer : Analyses RNA-Seq 7, 8, 9 novembre 2018 4 NGS technologies S. Baulande, I. Curie NGS & Cancer : Analyses RNA-Seq 7, 8, 9 novembre 2018 5 Hiseq, Pacbio, PGM, … What does that mean ? Platform Provider Reads Max Reads Size Throughput Time Number (bp) (Gb) Novaseq Illumina 20000 M 2x150 6000 <3 days Hiseq X Illumina 6000 M 2x150 1800 <3 days Hiseq Illumina 5000 M 2x150 1500 <7 days NextSeq Illumina 400 M 2x150 120 <2days S5 Ion Torrent 80 M 200 15 2-4 hours MiSeq Illumina 25 M 2x300 15 40 hours MiniSeq Illumina 25 M 2x150 7.5 24 hours S5 Ion Torrent 12 M 600 4.5 2-4 hours PGM 318 Ion Torrent 4 M 400 >1 2-4 hours PGM 316 Ion Torrent 2 M 400 >0.1 2-4 hours PGM 314 Ion Torrent 0.5 M 400 >0.01 2-4 hours Sequel Pacific 385 K – 6M 20000 8 – 128 <6 hours Bioscience (1-16 cells) (1-16 cells) NGS & Cancer : Analyses RNA-Seq 7, 8, 9 novembre 2018 6 NGS Market (2013) http://enseqlopedia.com/ngs-mapped/ S.
    [Show full text]
  • RNA at the Heart of Gene Expression: Special Issue of BMB Reports 2017
    BMB Rep. 2017; 50(4): 157 BMB www.bmbreports.org Reports Editorial RNA at the heart of gene expression: Special issue of BMB Reports 2017 Over the past several decades, our knowledge of RNAs has discovered that transcripts harboring nonsense mutation are increased dramatically. In particular, the recent advances in degraded on mRNAs bound by a nuclear cap-binding complex next-generation sequencing, combined with crosslinking im- (CBC). Because NMD is tightly coupled to a translation event, munoprecipitation or other variants, has led to the expansion this observation indicates that CBC can direct mRNA trans- of a list of RNAs including long noncoding RNAs (lncRNAs) lation. The details for CBC-dependent translation and the and small regulatory RNAs such as microRNAs, short differences in regulatory mechanisms between CBC and interfering RNAs, and Piwi-interacting RNAs. Although only a eIF4E-dependent translations are reviewed by Dr. Incheol Ryu small number of previously unappreciated RNA roles have from Korea University in Korea, and myself. In addition, the begun to be revealed, it is a good time to introduce the recent efficiency of eIF4E-dependent translation is dynamically con- RNA advances and their related functions to readers. This trolled by 3’-untranslated region (3’UTR). Prof. Akio Yamashita special issue on RNA invites three perspectives, five mini- from Yokohama City University School of Medicine and Prof. reviews, and four research articles. The topics covered in this Osamu Takeuchi from Kyoto University in Japan introduce a special issue include microRNA-mediated gene silencing, the variety of regulatory mechanisms for eIF4E-dependent trans- molecular mechanism of nonsense-mediated mRNA decay lation by 3’UTR-binding proteins.
    [Show full text]
  • Development of NMR Spectroscopic Methods for the Characterization of RNA
    Development of NMR spectroscopic methods for the characterization of RNA Dissertation zur Erlangung des Doktorgrades der Naturwissenschaften vorgelegt beim Fachbereich Biochemie, Chemie und Pharmazie der Johann Wolfgang Goethe-Universität in Frankfurt am Main von Robbin Schnieders aus Baden/Schweiz Frankfurt am Main 2020 (D30) vom Fachbereich Biochemie, Chemie und Pharmazie der Johann Wolfgang Goethe- Universität als Dissertation angenommen Dekan: Prof. Dr. Clemens Glaubitz Erster Gutachter: Prof. Dr. Harald Schwalbe Zweiter Gutachter: Prof. Dr. Jens Wöhnert Datum der Disputation: Meiner Familie. TABLE OF CONTENTS Table of Contents SUMMARY 1 ZUSAMMENFASSUNG 5 LIST OF ABBREVIATIONS 11 CHAPTER I: GENERAL INTRODUCTION 13 1.1 NMR SPECTROSCOPY ON RNA – FROM MAJOR ACHIEVEMENTS TO CURRENT CHALLENGES 14 1.2 TOWARDS 13C-DETECTION 19 CHAPTER II: DEVELOPMENT OF 13C-DETECTED NMR EXPERIMENTS FOR AMINO GROUPS IN RNA 23 2.1 INTRODUCTION 24 2.1.1 FROM AMINO GROUP EXCHANGE AND ATTEMPTS TO REDUCE ITS EFFECTS 25 2.1.2 LEARNING FROM PROTEIN EXPERIMENTS 28 2.2 MATERIALS AND METHODS 30 2.2.1 THE RNAS UNDER STUDY 30 2.2.2 SAMPLE PREPARATION 30 2.2.3 NMR SPECTROSCOPY 32 2.2.4 STRUCTURE CALCULATION 32 2.3 RESULTS AND DISCUSSION 33 2.3.1 PULSE SEQUENCE ANALYSIS 33 2.3.2 OPTIMIZATION OF THE CN-TRANSFER DELAY 36 2.3.3 APPLICATION OF THE 13C-DETECTED C(N)H-HDQC EXPERIMENT 37 2.3.4 APPLICATION OF THE 13C-DETECTED “AMINO”-NOESY EXPERIMENT 43 2.4 CONCLUSION AND OUTLOOK 46 2.4.1 FROM DQ TO ZQ 48 2.4.2 THE C(N)H-HDQC EXPERIMENT FOR THE CHARACTERIZATION OF APO STATES 48
    [Show full text]
  • A Magmatic Loading Model for Coronae on Venus Andrew J
    JOURNAL OF GEOPHYSICAL RESEARCH, VOL. 112, E04006, doi:10.1029/2006JE002731, 2007 Click Here for Full Article A magmatic loading model for coronae on Venus Andrew J. Dombard,1 Catherine L. Johnson,2,3 Mark A. Richards,4 and Sean C. Solomon5 Received 17 April 2006; revised 2 November 2006; accepted 29 November 2006; published 25 April 2007. [1] Models for the formation of coronae, quasi-circular, volcanotectonic features on Venus, must explain four critical characteristics: coronae display (1) a wide range of diameters, (2) complex, varied topography, (3) fracture annuli, and (4) sometimes extensive volcanism. Previous models have difficulty simultaneously satisfying all four constraints. On the basis of observations and interpretations of features on Venus and Earth and experiments in geophysical fluid dynamics, we propose that coronae form in response to magmatic loading of the crust over zones of partial melting at the tops of thermally buoyant heads of transient mantle plumes that impinge on the base of the thermal lithosphere. By tying corona formation to a melt zone and not directly to an impinging upwelling, our conceptual model can account for the wide range in corona diameters. Lateral crustal flow, facilitated by magmatic heating, may lead to central depressions characteristic of many coronae. A thermomechanical, finite element simulation with a dissipating thermal anomaly leads to crustal thinning and predicts an elevation profile consistent with one of the more populous topographic classes of coronae. Deformation concentrated at the transition from thicker to thinner lithosphere above the thermal anomaly yields a narrow annulus of enhanced differential stress, consistent with formation of fracture annuli.
    [Show full text]