Mechanisms of Small Heat Shock Proteins
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Computational Genome-Wide Identification of Heat Shock Protein Genes in the Bovine Genome [Version 1; Peer Review: 2 Approved, 1 Approved with Reservations]
F1000Research 2018, 7:1504 Last updated: 08 AUG 2021 RESEARCH ARTICLE Computational genome-wide identification of heat shock protein genes in the bovine genome [version 1; peer review: 2 approved, 1 approved with reservations] Oyeyemi O. Ajayi1,2, Sunday O. Peters3, Marcos De Donato2,4, Sunday O. Sowande5, Fidalis D.N. Mujibi6, Olanrewaju B. Morenikeji2,7, Bolaji N. Thomas 8, Matthew A. Adeleke 9, Ikhide G. Imumorin2,10,11 1Department of Animal Breeding and Genetics, Federal University of Agriculture, Abeokuta, Nigeria 2International Programs, College of Agriculture and Life Sciences, Cornell University, Ithaca, NY, 14853, USA 3Department of Animal Science, Berry College, Mount Berry, GA, 30149, USA 4Departamento Regional de Bioingenierias, Tecnologico de Monterrey, Escuela de Ingenieria y Ciencias, Queretaro, Mexico 5Department of Animal Production and Health, Federal University of Agriculture, Abeokuta, Nigeria 6Usomi Limited, Nairobi, Kenya 7Department of Animal Production and Health, Federal University of Technology, Akure, Nigeria 8Department of Biomedical Sciences, Rochester Institute of Technology, Rochester, NY, 14623, USA 9School of Life Sciences, University of KwaZulu-Natal, Durban, 4000, South Africa 10School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, 30032, USA 11African Institute of Bioscience Research and Training, Ibadan, Nigeria v1 First published: 20 Sep 2018, 7:1504 Open Peer Review https://doi.org/10.12688/f1000research.16058.1 Latest published: 20 Sep 2018, 7:1504 https://doi.org/10.12688/f1000research.16058.1 Reviewer Status Invited Reviewers Abstract Background: Heat shock proteins (HSPs) are molecular chaperones 1 2 3 known to bind and sequester client proteins under stress. Methods: To identify and better understand some of these proteins, version 1 we carried out a computational genome-wide survey of the bovine 20 Sep 2018 report report report genome. -
Identification of the Binding Partners for Hspb2 and Cryab Reveals
Brigham Young University BYU ScholarsArchive Theses and Dissertations 2013-12-12 Identification of the Binding arP tners for HspB2 and CryAB Reveals Myofibril and Mitochondrial Protein Interactions and Non- Redundant Roles for Small Heat Shock Proteins Kelsey Murphey Langston Brigham Young University - Provo Follow this and additional works at: https://scholarsarchive.byu.edu/etd Part of the Microbiology Commons BYU ScholarsArchive Citation Langston, Kelsey Murphey, "Identification of the Binding Partners for HspB2 and CryAB Reveals Myofibril and Mitochondrial Protein Interactions and Non-Redundant Roles for Small Heat Shock Proteins" (2013). Theses and Dissertations. 3822. https://scholarsarchive.byu.edu/etd/3822 This Thesis is brought to you for free and open access by BYU ScholarsArchive. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of BYU ScholarsArchive. For more information, please contact [email protected], [email protected]. Identification of the Binding Partners for HspB2 and CryAB Reveals Myofibril and Mitochondrial Protein Interactions and Non-Redundant Roles for Small Heat Shock Proteins Kelsey Langston A thesis submitted to the faculty of Brigham Young University in partial fulfillment of the requirements for the degree of Master of Science Julianne H. Grose, Chair William R. McCleary Brian Poole Department of Microbiology and Molecular Biology Brigham Young University December 2013 Copyright © 2013 Kelsey Langston All Rights Reserved ABSTRACT Identification of the Binding Partners for HspB2 and CryAB Reveals Myofibril and Mitochondrial Protein Interactors and Non-Redundant Roles for Small Heat Shock Proteins Kelsey Langston Department of Microbiology and Molecular Biology, BYU Master of Science Small Heat Shock Proteins (sHSP) are molecular chaperones that play protective roles in cell survival and have been shown to possess chaperone activity. -
45–54 Physical Location of Genes
Rocz. Nauk. Zoot., T. 44, z. 1 (2017) 45–54 PHYSICAL LOCATION OF GENES ENCODING SMALL HEAT SHOCK PROTEINS IN THE SUIDAE GENOMES* * Barbara Danielak-Czech1 , Anna Kozubska-Sobocińska1 , Marek Babicz2 1National Research Institute of Animal Production, Department of Animal Genomics and Molecular Biology, 32-083 Balice n. Kraków, Poland 2University of Life Sciences in Lublin, Faculty of Biology, Animal Sciences and Bioeconomy, Akademicka 13, 20-950 Lublin, Poland The subject of the studies carried out was physical mapping of the HSPB1, HSPB2, CRY- AB (alternative name HSPB5), HSPB6 and HSPB8 genes from the family of small heat shock protein genes (HSPB) on chromosomes of the domestic pig (Sus scrofa domestica) and European wild pig (Sus scrofa scrofa). The application of FISH technique with pro- bes derived from porcine BAC clones: CH242-237N5, CH242-333E2, CH242-173G9 and CH242-102C8 made it possible to determine the location of the studied genes, respectively, in 3p15, 9p21, 6q12 and 14q21 genome regions of domestic and wild pigs. The physical localization of HSPB genes allowed assigning these loci to the linkage and syntenic groups of genes in Suidae. Precise, molecular and cytogenetic identification of genes responsible for resistance to stress and disease, and determining meat production is essential for the genetic selection effects, aimed to reduce mortality causing significant economic loss in animal production. The studies performed may help to elucidate the role of the HSPB genes in protection against pathogenic or environmental stress, affecting pigs’ survivability and meat quality. Key words: Suidae, FISH, HSPB genes, muscle development, meat quality Small heat shock proteins (HSPB) are the smallest, most variable in size, class of the multigene heat shock protein (HSP) family, having molecular masses ranging approximately from 15 to 30 kDa and the α-crystallin domains (~85 amino acids residues) in the highly conserved C-terminal protein regions. -
The Growing World of Small Heat Shock Proteins: from Structure to Functions
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Research Online University of Wollongong Research Online Illawarra Health and Medical Research Institute Faculty of Science, Medicine and Health 2017 The growing world of small heat shock proteins: from structure to functions Serena Carra University of Modena and Reggio Emilia Simon Alberti Max Planck Institute Patrick Arrigo Universite de Lyon Justin Benesch Oxford University Ivor Benjamin University of Utah See next page for additional authors Follow this and additional works at: https://ro.uow.edu.au/ihmri Part of the Medicine and Health Sciences Commons Recommended Citation Carra, Serena; Alberti, Simon; Arrigo, Patrick; Benesch, Justin; Benjamin, Ivor; Boelens, Wilbert C.; Bartelt- Kirbach, Britta; Brundel, Bianca; Buchner, Johannes; Bukau, Bernd; Carver, John A.; Ecroyd, Heath; Emanuelsson, Cecilia; Finet, Stephanie; Golenhofen, Nikola; Goloubinoff, Pierre; Gusev, Nikolai; Haslbeck, Martin; Hightower, Lawrence; Kampinga, Harm; Klevit, Rachel; Liberek, Krzysztof; Mchaourab, Hassane; McMenimen, Kathryn; Poletti, Angelo; Quinlan, Roy; Strelkov, Sergei; Toth, Melinda; Vierling, Elizabeth; and Tanguay, Robert, "The growing world of small heat shock proteins: from structure to functions" (2017). Illawarra Health and Medical Research Institute. 1251. https://ro.uow.edu.au/ihmri/1251 Research Online is the open access institutional repository for the University of Wollongong. For further information contact the UOW Library: [email protected] The growing world of small heat shock proteins: from structure to functions Abstract Small heat shock proteins (sHSPs) are present in all kingdoms of life and play fundamental roles in cell biology. sHSPs are key components of the cellular protein quality control system, acting as the first line of defense against conditions that affect protein homeostasis and proteome stability, from bacteria to plants to humans. -
Gene Transfer of Heat-Shock Protein 20 Protects Against Ischemia/ Reperfusion Injury in Rat Hearts1
Acta Pharmacologica Sinica 2005 Oct; 26 (10): 1193–1200 Full-length article Gene transfer of heat-shock protein 20 protects against ischemia/ reperfusion injury in rat hearts1 Yan-hui ZHU, Tie-min MA, Xian WANG2 Department of Physiology and Pathophysiology, Basic Medical College, Key Laboratory of Molecular Cardiovascular Biology, Ministry of Education, Peking University, Beijing 100083, China Key words Abstract reperfusion injury; adenovirus; apoptosis; Aim: To explore whether overexpression of HSP20 in the myocardium could pro- myocardial infarction; heat-shock proteins tect against ischemia/reperfusion injury in rats. Methods: Rat hearts were in- jected with vector, recombinant adenovirus encoding green fluorescent protein 1 Project supported by the National Basic Res- (Ad.GFP) or recombinant adenovirus encoding wild-type HSP20 (Ad.HSP20) in earch Program of China (No G2000056908) the left ventricle. Four days later, hearts were removed and expression of HSP20 awarded to Xian WANG. 2 Correspondence to Prof Xian WANG. was measured in the left ventricle. Subsets of animals in the vector-, Ad.GFP- , and Phn/Fax 86-10-8280-1443. Ad.HSP20-treated groups were subjected to 20-min ischemia and 120-min E-mail [email protected] reperfusion. Myocardial injury was evaluated by infarct size and level of serum Received 2004-12-08 cardiac troponin T and creatine phosphokinase. Apoptosis of cardiomyocytes Accepted 2005-03-30 was determined by TUNEL staining. Cardiac function was evaluated by hemody- namic indexes. Results: Infarct size and serum cardiac troponin T and creatine doi: 10.1111/j.1745-7254.2005.00139.x phosphokinase levels were significantly reduced in Ad.HSP20-treated hearts com- pared with vector- and Ad.GFP-treated hearts. -
Genome-Wide DNA Methylation Map of Human Neutrophils Reveals Widespread Inter-Individual Epigenetic Variation
www.nature.com/scientificreports OPEN Genome-wide DNA methylation map of human neutrophils reveals widespread inter-individual Received: 15 June 2015 Accepted: 29 October 2015 epigenetic variation Published: 27 November 2015 Aniruddha Chatterjee1,2, Peter A. Stockwell3, Euan J. Rodger1, Elizabeth J. Duncan2,4, Matthew F. Parry5, Robert J. Weeks1 & Ian M. Morison1,2 The extent of variation in DNA methylation patterns in healthy individuals is not yet well documented. Identification of inter-individual epigenetic variation is important for understanding phenotypic variation and disease susceptibility. Using neutrophils from a cohort of healthy individuals, we generated base-resolution DNA methylation maps to document inter-individual epigenetic variation. We identified 12851 autosomal inter-individual variably methylated fragments (iVMFs). Gene promoters were the least variable, whereas gene body and upstream regions showed higher variation in DNA methylation. The iVMFs were relatively enriched in repetitive elements compared to non-iVMFs, and were associated with genome regulation and chromatin function elements. Further, variably methylated genes were disproportionately associated with regulation of transcription, responsive function and signal transduction pathways. Transcriptome analysis indicates that iVMF methylation at differentially expressed exons has a positive correlation and local effect on the inclusion of that exon in the mRNA transcript. Methylation of DNA is a mechanism for regulating gene function in all vertebrates. It has a role in gene silencing, tissue differentiation, genomic imprinting, chromosome X inactivation, phenotypic plasticity, and disease susceptibility1,2. Aberrant DNA methylation has been implicated in the pathogenesis of sev- eral human diseases, especially cancer3–5. Variation in DNA methylation patterns in healthy individuals has been hypothesised to alter human phenotypes including susceptibility to common diseases6 and response to drug treatments7. -
Supplementary Materials
Supplementary materials Supplementary Table S1: MGNC compound library Ingredien Molecule Caco- Mol ID MW AlogP OB (%) BBB DL FASA- HL t Name Name 2 shengdi MOL012254 campesterol 400.8 7.63 37.58 1.34 0.98 0.7 0.21 20.2 shengdi MOL000519 coniferin 314.4 3.16 31.11 0.42 -0.2 0.3 0.27 74.6 beta- shengdi MOL000359 414.8 8.08 36.91 1.32 0.99 0.8 0.23 20.2 sitosterol pachymic shengdi MOL000289 528.9 6.54 33.63 0.1 -0.6 0.8 0 9.27 acid Poricoic acid shengdi MOL000291 484.7 5.64 30.52 -0.08 -0.9 0.8 0 8.67 B Chrysanthem shengdi MOL004492 585 8.24 38.72 0.51 -1 0.6 0.3 17.5 axanthin 20- shengdi MOL011455 Hexadecano 418.6 1.91 32.7 -0.24 -0.4 0.7 0.29 104 ylingenol huanglian MOL001454 berberine 336.4 3.45 36.86 1.24 0.57 0.8 0.19 6.57 huanglian MOL013352 Obacunone 454.6 2.68 43.29 0.01 -0.4 0.8 0.31 -13 huanglian MOL002894 berberrubine 322.4 3.2 35.74 1.07 0.17 0.7 0.24 6.46 huanglian MOL002897 epiberberine 336.4 3.45 43.09 1.17 0.4 0.8 0.19 6.1 huanglian MOL002903 (R)-Canadine 339.4 3.4 55.37 1.04 0.57 0.8 0.2 6.41 huanglian MOL002904 Berlambine 351.4 2.49 36.68 0.97 0.17 0.8 0.28 7.33 Corchorosid huanglian MOL002907 404.6 1.34 105 -0.91 -1.3 0.8 0.29 6.68 e A_qt Magnogrand huanglian MOL000622 266.4 1.18 63.71 0.02 -0.2 0.2 0.3 3.17 iolide huanglian MOL000762 Palmidin A 510.5 4.52 35.36 -0.38 -1.5 0.7 0.39 33.2 huanglian MOL000785 palmatine 352.4 3.65 64.6 1.33 0.37 0.7 0.13 2.25 huanglian MOL000098 quercetin 302.3 1.5 46.43 0.05 -0.8 0.3 0.38 14.4 huanglian MOL001458 coptisine 320.3 3.25 30.67 1.21 0.32 0.9 0.26 9.33 huanglian MOL002668 Worenine -
Could Small Heat Shock Protein HSP27 Be a First-Line Target for Preventing Protein Aggregation in Parkinson’S Disease?
International Journal of Molecular Sciences Review Could Small Heat Shock Protein HSP27 Be a First-Line Target for Preventing Protein Aggregation in Parkinson’s Disease? Javier Navarro-Zaragoza 1,2 , Lorena Cuenca-Bermejo 2,3 , Pilar Almela 1,2,* , María-Luisa Laorden 1,2 and María-Trinidad Herrero 2,3,* 1 Department of Pharmacology, School of Medicine, University of Murcia, Campus Mare Nostrum, 30100 Murcia, Spain; [email protected] (J.N.-Z.); [email protected] (M.-L.L.) 2 Institute of Biomedical Research of Murcia (IMIB), Campus de Ciencias de la Salud, 30120 Murcia, Spain 3 Clinical & Experimental Neuroscience (NICE), Institute for Aging Research, School of Medicine, University of Murcia, Campus Mare Nostrum, 30100 Murcia, Spain; [email protected] * Correspondence: [email protected] (P.A.); [email protected] (M.-T.H.); Tel.: +34-868889358 (P.A.); +34-868883954 (M.-T.H.) Abstract: Small heat shock proteins (HSPs), such as HSP27, are ubiquitously expressed molecular chaperones and are essential for cellular homeostasis. The major functions of HSP27 include chaper- oning misfolded or unfolded polypeptides and protecting cells from toxic stress. Dysregulation of stress proteins is associated with many human diseases including neurodegenerative diseases, such as Parkinson’s disease (PD). PD is characterized by the presence of aggregates of α-synuclein in the central and peripheral nervous system, which induces the degeneration of dopaminergic neurons in the substantia nigra pars compacta (SNpc) and in the autonomic nervous system. Autonomic dys- function is an important non-motor phenotype of PD, which includes cardiovascular dysregulation, Citation: Navarro-Zaragoza, J.; among others. Nowadays, the therapies for PD focus on dopamine (DA) replacement. -
Genomic and Transcriptome Analysis Revealing an Oncogenic Functional Module in Meningiomas
Neurosurg Focus 35 (6):E3, 2013 ©AANS, 2013 Genomic and transcriptome analysis revealing an oncogenic functional module in meningiomas XIAO CHANG, PH.D.,1 LINGLING SHI, PH.D.,2 FAN GAO, PH.D.,1 JONATHAN RUssIN, M.D.,3 LIYUN ZENG, PH.D.,1 SHUHAN HE, B.S.,3 THOMAS C. CHEN, M.D.,3 STEVEN L. GIANNOTTA, M.D.,3 DANIEL J. WEISENBERGER, PH.D.,4 GAbrIEL ZADA, M.D.,3 KAI WANG, PH.D.,1,5,6 AND WIllIAM J. MAck, M.D.1,3 1Zilkha Neurogenetic Institute, Keck School of Medicine, University of Southern California, Los Angeles, California; 2GHM Institute of CNS Regeneration, Jinan University, Guangzhou, China; 3Department of Neurosurgery, Keck School of Medicine, University of Southern California, Los Angeles, California; 4USC Epigenome Center, Keck School of Medicine, University of Southern California, Los Angeles, California; 5Department of Psychiatry, Keck School of Medicine, University of Southern California, Los Angeles, California; and 6Division of Bioinformatics, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California Object. Meningiomas are among the most common primary adult brain tumors. Although typically benign, roughly 2%–5% display malignant pathological features. The key molecular pathways involved in malignant trans- formation remain to be determined. Methods. Illumina expression microarrays were used to assess gene expression levels, and Illumina single- nucleotide polymorphism arrays were used to identify copy number variants in benign, atypical, and malignant me- ningiomas (19 tumors, including 4 malignant ones). The authors also reanalyzed 2 expression data sets generated on Affymetrix microarrays (n = 68, including 6 malignant ones; n = 56, including 3 malignant ones). -
Dsir2 and Dmp53 Interact to Mediate Aspects of CR-Dependent Life Span
β-catenin-mediated hair growth induction effect of 3,4,5-tri-O-caffeoylquinic acid 著者(英) Meriem Bejaoui, Myra Orlina VILLAREAL, Hiroko ISODA journal or Aging publication title volume 11 number 12 page range 4216-4237 year 2019-06 権利 Bejaoui et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. URL http://hdl.handle.net/2241/00157702 doi: 10.18632/aging.102048 Creative Commons : 表示 http://creativecommons.org/licenses/by/3.0/deed.ja www.aging-us.com AGING 2019, Vol. 11, No. 12 Research Paper β-catenin-mediated hair growth induction effect of 3,4,5-tri-O- caffeoylquinic acid Meriem Bejaoui1, Myra O. Villareal1,2,3, Hiroko Isoda1,2,3 1School of Integrative and Global Majors (SIGMA), University of Tsukuba, Tsukuba City, 305-8572 Japan 2Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba City, 305-8572 Japan 3Alliance for Research on the Mediterranean and North Africa (ARENA), University of Tsukuba, Tsukuba City, 305- 8572 Japan Correspondence to: Hiroko Isoda; email: [email protected] Keywords: 3,4,5-tri-O-caffeoylquinic acid (TCQA), β-catenin, dermal papilla, anagen, Wnt/β-catenin pathway Received: April 23, 2018 Accepted: June 17, 2019 Published: June 29, 2019 Copyright: Bejaoui et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. -
Detecting Hub Genes Associated with Lauren Subtype of Gastric Cancer by Weighted Gene Co-Expression Network Analysis
Detecting Hub Genes Associated With Lauren Subtype of Gastric Cancer by Weighted Gene Co-Expression Network Analysis XU LIU Xi'an Jiaotong University https://orcid.org/0000-0003-4050-9939 Li Yao China XD Group Hospital Jingkun Qu Xi'an Jiaotong University Lin Liu Xi'an Jiaotong University XU LIU xi'an medical Uiversity Jiansheng Wang Xi'an Jiaotong University George A. Calin University of Texas MD Anderson Cancer Center Jia Zhang ( [email protected] ) Xi'an Jiaotong University Research article Keywords: gastric cancer, Lauren subtype, WGCNA, hub gene Posted Date: August 26th, 2020 DOI: https://doi.org/10.21203/rs.3.rs-61626/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/19 Abstract Background Gastric cancer is a rather heterogeneous type of malignant tumor. Among the several classication system, Lauren classication can reect biological and pathological differences of different gastric cancer. Method to provide systematic biological perspectives, we employ weighted gene co-expression network analysis to reveal transcriptomic characteristics of gastric cancer. GSE15459 and TCGA STAD dataset were downloaded. Co-expressional network was constructed and gene modules were identied. Result Two key modules blue and red were suggested to be associated with diffuse gastric cancer. Functional enrichment analysis of genes from the two modules was performed. Validating in TCGA STAD dataset, we propose 10 genes TNS1, PGM5, CPXM2, LIMS2, AOC3, CRYAB, ANGPTL1, BOC and TOP2A to be hub-genes for diffuse gastric cancer. Finally these ten genes were associated with gastric cancer survival. Conclusion More attention need to be paid and further experimental study is required to elucidate the role of these genes. -
Dynamics of Meiotic Sex Chromosome Inactivation And
bioRxiv preprint doi: https://doi.org/10.1101/665372; this version posted July 8, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. 1 Dynamics of Meiotic Sex Chromosome Inactivation 2 and Pachytene Activation in Mice Spermatogenesis 3 4 Ábel Vértesy1,2; Javier Frias-Aldeguer1,4; Zeliha Sahin1,3; Nicolas Rivron1,4; Alexander van 5 Oudenaarden1,2 and Niels Geijsen1,5 6 7 1. Hubrecht Institute-KNAW (Royal Netherlands Academy of Arts and Sciences) and 8 University Medical Center, 3584 CT Utrecht, The Netherlands 9 2. Department of Genetics, Center for Molecular Medicine, Cancer Genomics Netherlands, 10 University Medical Center Utrecht, The Netherlands 11 3. Amsterdam UMC, University of Amsterdam, Clinical Genetics, Amsterdam Medical 12 Research, Meibergdreef 9, Amsterdam, Netherlands 13 4. MERLN Institute for Technology-Inspired Regenerative Medicine, Maastricht University, 14 The Netherlands 15 5. Faculty of Veterinary Medicine, Clinical Sciences of Companion Animals, Utrecht 16 University, The Netherlands 17 18 Abstract 19 During germ cell development, cells undergo a drastic switch from mitosis to meiosis to 20 form haploid germ cells. Sequencing and computational technologies now allow studying 21 development at the single-cell level. Here we developed a multiplexed trajectory 22 reconstruction to create a high-resolution developmental map of spermatogonia and 23 prophase-I spermatocytes from testes of a Dazl-GFP reporter mouse. We identified three 24 main transitions in the meiotic prophase-I: meiotic entry, the meiotic sex chromosome 25 inactivation (MSCI), and concomitant pachytene activation.