Organocatalysis: a Brief Overview on Its Evolution and Applications
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Thiourea Derivatives of Tröger's Base
General Papers ARKIVOC 2009 (xiv) 124-134 Thiourea derivatives of Tröger’s base: synthesis, enantioseparation and evaluation in organocatalysis of Michael addition to nitroolefins Delphine Didiera and Sergey Sergeyeva,b* a Université Libre de Bruxelles (ULB), Laboratoire de Chimie des Polymères, CP 206/01, Boulevard du Triomphe, 1050 Brussels, Belgium b University of Antwerp, Department of Chemistry, Groenenborgerlaan 171, 2020 Antwerp, Belgium E-mail: [email protected] Abstract The catalytic activity of racemic thiourea derivatives of Tröger’s base (±)-2–4 in Michael additions of malonate derivatives to trans-β-nitrostyrene was studied. Due to the low basicity of Tröger’s base, the outcome of the addition reactions was strongly dependent on the pKa of the nucleophile. Thiourea catalysts (±)-2, 3 were resolved on the chiral stationary phase Whelk O1. Unfortunately, enantiopure catalysts 2 and 3 showed no stereoselectivity in the Michael addition. Keywords: Tröger’s base, thiourea, Michael addition, catalysis, WhelkO1 Introduction In the recent years, asymmetric organocatalysis has emerged as a competitive, environment- friendlier alternative to catalysis with transition metal complexes. While simple molecules such as derivatives of proline have been receiving a great deal of attention due to their availability, considerable effort has been directed towards searching for novel chiral scaffolds for asymmetric organocatalysis.1 Tröger’s base 1 is a chiral diamine bearing two stereogenic bridge-head nitrogen atoms (Figure 1). The two aromatic rings fused to the central bicyclic framework are almost perpendicular to each other, creating a rigid, V-shaped C2-symmetrical molecular scaffold with a distance of ca. 1nm between the two extremities.2 Due to its chirality and relatively rigid geometry, one would intuitively expect a considerable interest for analogues of Tröger’s base in the field of asymmetric synthesis and catalysis. -
Part I Principles of Enzyme Catalysis
j1 Part I Principles of Enzyme Catalysis Enzyme Catalysis in Organic Synthesis, Third Edition. Edited by Karlheinz Drauz, Harald Groger,€ and Oliver May. Ó 2012 Wiley-VCH Verlag GmbH & Co. KGaA. Published 2012 by Wiley-VCH Verlag GmbH & Co. KGaA. j3 1 Introduction – Principles and Historical Landmarks of Enzyme Catalysis in Organic Synthesis Harald Gr€oger and Yasuhisa Asano 1.1 General Remarks Enzyme catalysis in organic synthesis – behind this term stands a technology that today is widely recognized as a first choice opportunity in the preparation of a wide range of chemical compounds. Notably, this is true not only for academic syntheses but also for industrial-scale applications [1]. For numerous molecules the synthetic routes based on enzyme catalysis have turned out to be competitive (and often superior!) compared with classic chemicalaswellaschemocatalyticsynthetic approaches. Thus, enzymatic catalysis is increasingly recognized by organic chemists in both academia and industry as an attractive synthetic tool besides the traditional organic disciplines such as classic synthesis, metal catalysis, and organocatalysis [2]. By means of enzymes a broad range of transformations relevant in organic chemistry can be catalyzed, including, for example, redox reactions, carbon–carbon bond forming reactions, and hydrolytic reactions. Nonetheless, for a long time enzyme catalysis was not realized as a first choice option in organic synthesis. Organic chemists did not use enzymes as catalysts for their envisioned syntheses because of observed (or assumed) disadvantages such as narrow substrate range, limited stability of enzymes under organic reaction conditions, low efficiency when using wild-type strains, and diluted substrate and product solutions, thus leading to non-satisfactory volumetric productivities. -
Enantioselective Synthesis of the (1S,5R)-Enantiomer of Litseaverticillols a and B
Biosci. Biotechnol. Biochem., 70 (10), 2564–2566, 2006 Note Enantioselective Synthesis of the (1S,5R)-Enantiomer of Litseaverticillols A and B y Akira MORITA, Hiromasa KIYOTA, and Shigefumi KUWAHARA Laboratory of Applied Bioorganic Chemistry, Graduate School of Agricultural Science, Tohoku University, Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai 981-8555, Japan Received May 8, 2006; Accepted May 31, 2006; Online Publication, October 7, 2006 [doi:10.1271/bbb.60253] An enantioselective synthesis of the (1S,5R)-enan- which have recently culminated in the first enantiose- tiomer of litseaverticillols A and B was accomplished in lective total synthesis of (1R,5S)-(À)-1 and (1R,5S)-(À)- line with our previously reported synthetic pathway for 2.4) In this note, we describe the synthesis of their their (1R,5S)-enantiomer. The use of ‘‘EtSCeCl2’’ pre- enantiomers directed toward an evaluation of the differ- pared from EtSLi and CeCl3, instead of previously ence in biological activity between the enantiomers of employed EtSLi itself, for the formation of thiol ester litseaverticillols A and B. intermediates prevented any undesirable epimerization Our synthesis of (1S,5R)-1 and (1S,5R)-2 basically occurring in the process. followed our previous synthesis of their corresponding enantiomers, (1R,5S)-1 and (1R,5S)-2, respectively,4) Key words: litseaverticillol; enantioselective synthesis; except that (R)-4-benzyloxazolidin-2-one was employed sesquiterpenoid; anti-HIV as the source of chirality, instead of its (S)-form used in the previous synthesis. Homogeranic -
Lecture 3: Stereochemistry and Drugs Key Objectives: 1
Lecture 3: Stereochemistry and drugs Key objectives: 1. Be able to explain the role of stereochemistry in drug action or metabolism 2. Be able to identify a chiral center (or centers) in a drug 3. Be able to explain the difference between enantiomers and diastereomers Value of chirality and stereochemistry: Chirality as expressed through stereoisomers increases the specificity of molecule recognition and signaling. Like a key in a lock, or a hand in a glove. Some useful definitions: Chirality (and chiral centers): An object (such as a molecule) that is asymmetric and therefore not superimposable on its own image. Chiral centers are the most common features within molecules that give rise to chirality. Stereoisomer: A molecule that possesses at least one chiral center (or center of chirality). Enantiomers: A type of stereoisomer that exists in mirror image forms. See Figure 1. Diastereomers: A type of stereoisomer that possesses more than one chiral center. Stereospecific: A term used to describe a stereochemical property that one isomer possesses but the other does not. For example, the stereospecific metabolism of the S-enantiomer of a compound by an enzyme but the R-enantiomer is not metabolized by that enzyme. Stereoselective: A term used to describe a stereochemical property that is shared by both stereoisomers, but the property is greater in one isomer than the other. For example, the stereoselective binding of the R-enantiomer for a receptor indicates that the S-enantiomer also binds but not as avidly as the R-enantiomer. Enantiomers Figure 1: For enantiomers, many times we use the example of our left and right hands to demonstrate their asymmetry. -
Diastereomers Diastereomers
Diastereomers Diastereomers: Stereoisomers that are not mirror images. enantiomer (R) (S) (S) (R) diastereomers diastereomer diastereomer enantiomer (R) (S) (R) (S) Diastereomers Diastereomers: Stereoisomers that are not mirror images. (R) enantiomer (S) (S) (R) diastereomer To draw the enantiomer of a molecule with chiral centers, invert stereochemistry at all chiral centers. (R) To draw a diastereomer of a molecule (R) with chiral centers, invert stereochemistry at only some chiral centers. Meso Compounds Meso: A molecule that contains chiral centers, but is achiral. 3 Are these molecules chiral? (R) (S) (These are diff eren t f rom th e 3 molecules I just showed; they have 2 -Cl’s, rather than 1 -Cl & 1 -OH. enantiomer (R) (S) (R) (S) These molecules are chiral mirror images of one another. (R,R) and (S,S) are not the same. Meso Compounds Meso: A molecule that contains chiral centers, but is achiral. 3 enantiomer ? (R) (S) (S) (R) no! 3 same molecule! enantiomer (R) (S) (R) (S) Meso Compounds Meso: A molecule that contains chiral centers, but is achiral. 3 enantiomer ? (R) (S) (S) (R) no! 3 same molecule! If a molecule • contains the same number of (R) and (S) stereocenters, and • those stereocenters have identical groups attached, then the molecule is achiral and meso. Meso Compounds Meso: A molecule that contains chiral centers, but is achiral. 3 same molecule (R) (S) (S) (R) 3 meso diastereomers meso diastereomer diastereomer enantiomer (R) (S) (R) (S) chiral chiral Properties of Enantiomers Most physical properties of enantiomers are identical. diethyl-(R,R)-tartrate diethyl-(S,S)-tartrate boiling point 280 °C 280 °C melting point 19 °C 19 °C density 1.204 g/mL 1.204 g/mL refractive index 1.447 1.447 i.e., chirality does not affect most physical properties. -
Enantiomers & Diastereomers
Chapter 5 Stereochemistry Chiral Molecules Ch. 5 - 1 1. Chirality & Stereochemistry An object is achiral (not chiral) if the object and its mirror image are identical Ch. 5 - 2 A chiral object is one that cannot be superposed on its mirror image Ch. 5 - 3 1A. The Biological Significance of Chirality Chiral molecules are molecules that cannot be superimposable with their mirror images O O ● One enantiomer NH causes birth defects, N O the other cures morning sickness O Thalidomide Ch. 5 - 4 HO NH HO OMe Tretoquinol OMe OMe ● One enantiomer is a bronchodilator, the other inhibits platelet aggregation Ch. 5 - 5 66% of all drugs in development are chiral, 51% are being studied as a single enantiomer Of the $475 billion in world-wide sales of formulated pharmaceutical products in 2008, $205 billion was attributable to single enantiomer drugs Ch. 5 - 6 2. Isomerisom: Constitutional Isomers & Stereoisomers 2A. Constitutional Isomers Isomers: different compounds that have the same molecular formula ● Constitutional isomers: isomers that have the same molecular formula but different connectivity – their atoms are connected in a different order Ch. 5 - 7 Examples Molecular Constitutional Formula Isomers C4H10 and Butane 2-Methylpropane Cl Cl C3H7Cl and 1-Chloropropane 2-Chloropropane Ch. 5 - 8 Examples Molecular Constitutional Formula Isomers CH O CH C H O OH and 3 3 2 6 Ethanol Methoxymethane O OCH and 3 C H O OH 4 8 2 O Butanoic acid Methyl propanoate Ch. 5 - 9 2B. Stereoisomers Stereoisomers are NOT constitutional isomers Stereoisomers have their atoms connected in the same sequence but they differ in the arrangement of their atoms in space. -
Chapter 4: Stereochemistry Introduction to Stereochemistry
Chapter 4: Stereochemistry Introduction To Stereochemistry Consider two of the compounds we produced while finding all the isomers of C7H16: CH3 CH3 2-methylhexane 3-methylhexane Me Me Me C Me H Bu Bu Me Me 2-methylhexane H H mirror Me rotate Bu Me H 2-methylhexame is superimposable with its mirror image Introduction To Stereochemistry Consider two of the compounds we produced while finding all the isomers of C7H16: CH3 CH3 2-methylhexane 3-methylhexane H C Et Et Me Pr Pr 3-methylhexane Me Me H H mirror Et rotate H Me Pr 2-methylhexame is superimposable with its mirror image Introduction To Stereochemistry Consider two of the compounds we produced while finding all the isomers of C7H16: CH3 CH3 2-methylhexane 3-methylhexane .Compounds that are not superimposable with their mirror image are called chiral (in Greek, chiral means "handed") 3-methylhexane is a chiral molecule. .Compounds that are superimposable with their mirror image are called achiral. 2-methylhexane is an achiral molecule. .An atom (usually carbon) with 4 different substituents is called a stereogenic center or stereocenter. Enantiomers Et Et Pr Pr Me CH3 Me H H 3-methylhexane mirror enantiomers Et Et Pr Pr Me Me Me H H Me H H Two compounds that are non-superimposable mirror images (the two "hands") are called enantiomers. Introduction To Stereochemistry Structural (constitutional) Isomers - Compounds of the same molecular formula with different connectivity (structure, constitution) 2-methylpentane 3-methylpentane Conformational Isomers - Compounds of the same structure that differ in rotation around one or more single bonds Me Me H H H Me H H H H Me H Configurational Isomers or Stereoisomers - Compounds of the same structure that differ in one or more aspects of stereochemistry (how groups are oriented in space - enantiomers or diastereomers) We need a a way to describe the stereochemistry! Me H H Me 3-methylhexane 3-methylhexane The CIP System Revisited 1. -
Organocatalytic Cyclopropanation of (E)-Dec-2-Enal: Synthesis, Spectral Analysis and Mechanistic Understanding
Organocatalytic Cyclopropanation of (E)-Dec-2-enal: Synthesis, Spectral Analysis and Mechanistic Understanding. Marta Meazza, Agnieszka Kowalczuk, Sarah Watkins, Simon Holland, Thomas A. 5 Logothetis, Ramon Rios Faculty of Natural & Environmental Sciences, Department of Chemistry, University of Southampton, Highfield Campus, Southampton, SO17 1BJ, United Kingdom In memoriam Klaus Burger ABSTRACT 10 An undergraduate experiment combining synthesis, NMR analysis and mechanistic understanding is reported. The students perform an organocatalyzed cyclopropanation reaction of (E)-dec-2-enal and are then required to determine the diastereoselectivity and assign the relative configuration of each product using NMR spectroscopy. 15 ABSTRACT GRAPHIC Journal of Chemical Education 8/20/18 Page 1 of 21 KEYWORDS Upper Division Undergraduate, Organic Chemistry, Hands-On Learning/Manipulatives, Inquiry-Based/Discovery Learning, Asymmetric Synthesis, 20 NMR Spectroscopy, Diastereomers. BACKGROUND In recent years, catalysis has had a huge impact on the nature of organic synthesis. With the increasing emphasis on green chemistry and sustainable processes, the development of new, highly enantioselective methodologies for the 25 synthesis of new, 3D scaffolds has become of paramount importance for organic chemists. A clear example is the 2001 Nobel Prize awarded to K. B. Sharpless, R. Noyori and W. S. Knowles for their contributions to this field. A further step towards the development of greener methodologies was made in 2000 with the “renaissance” of organocatalysis by the pioneering works of B. List1 and D.W.C. 30 MacMillan.2 List et al.1 developed the first intermolecular enantioselective aldol reaction catalyzed by proline through enamine activation, while MacMillan and coworkers2 developed the first organocatalyzed enantioselective Diels-Alder reaction through iminium activation. -
Asymmetric Organocatalysis Revisited: Taming Hydrindanes with Jørgensen–Hayashi Catalyst
SYNTHESIS0039-78811437-210X Georg Thieme Verlag Stuttgart · New York 2019, 51, 1123–1134 feature 1123 en Syn thesis Y. Stöckl et al. Feature Asymmetric Organocatalysis Revisited: Taming Hydrindanes with Jørgensen–Hayashi Catalyst Yannick Stöckl O Michael addition Wolfgang Frey O Aldol [4+2] cat. 1 H H H Johannes Lang N R H Birgit Claasen + H Angelika Baro O O O O O H H Sabine Laschat* 0000-0002-1488-3903 R R O R O O Institut für Organische Chemie, Universität Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart, Germany [email protected] Published as part of the 50 Years SYNTHESIS – Golden Anniversary Issue Received: 12.11.2018 amples are amaminol A (2),9 the tricyclic unit of Accepted: 15.11.2018 ikarugamycin (3),10 or the CD ring unit of deoxycholic acid Published online: 14.12.2018 11 DOI: 10.1055/s-0037-1610409; Art ID: ss-2018-z0760-fa (4) (Figure 1). License terms: H Abstract The organocatalytic Michael reaction of easily available 1-cy- clopentene-1-carbaldehyde and 1,3-dicarbonyl compounds led to cy- H clopentanecarbaldehydes on a gram scale with low catalyst loading (2 1 (hydrindane) mol%) and high enantioselectivity. The synthetic potential of 4-acyl- H2N hexahydroindenones from intramolecular aldol condensation was OH demonstrated by Diels–Alder reaction to a tetracyclic derivative with seven stereogenic centers. The diastereofacial preference of the tetra- 2 (amaminol A) H H cyclic product was confirmed by DFT calculations. The described reac- R1 tion sequence is characterized by few redox-economic steps and high degree of molecular complexity. -
Enamine-Based Organocatalysis with Proline And
Acc. Chem. Res. 2004, 37, 580-591 carbon bond in a stereospecific fashion. These same Enamine-Based Organocatalysis features are typically absent in traditional synthetic asym- with Proline and Diamines: The metric aldol methodologies.2,3 Our ideal synthetic catalyst would be one that could Development of Direct Catalytic generate enamines from any number of aldehydes or ketones and then direct bond-forming reactions with a Asymmetric Aldol, Mannich, wide variety of electrophiles beyond the carbonyl elec- Michael, and Diels-Alder trophiles of the aldol reaction. Further, since these cata- lysts also generate imines as part of their reaction mech- Reactions anism, electrophilic catalysis might facilitate diverse WOLFGANG NOTZ, FUJIE TANAKA, AND reactions with nucleophiles. Such an antibody might be termed an ªopen-active siteº catalytic antibody. Indeed, CARLOS F. BARBAS, III* The Skaggs Institute for Chemical Biology and the we were able to demonstrate that our aldolase antibodies Departments of Chemistry and Molecular Biology, The could catalyze not only a wide range of intra- and Scripps Research Institute, 10550 North Torrey Pines Road, intermolecular aldol reactions but also decarboxylation La Jolla, California 92037 reactions via imine catalysis and certain Michael reactions Received February 2, 2004 as well.2 Significantly for what would become our studies in organocatalysis, in our search for ªopen-active siteº ABSTRACT antibody catalysis, we studied the potential of aldolase Enamines and imines have long been recognized as key intermedi- antibodies to catalyze the addition of ketones to nitrosty- ates in enzyme catalysis, particularly within a class of enzymes renes in Michael reactions, the addition of ketones to organic chemists would very much like to emulate, the aldolases. -
One-Pot Two-Step Organocatalytic Asymmetric Synthesis of Spirocyclic Piperidones Via Wolff Rearrangement–Amidation–Michael– Hemiaminalization Sequence
catalysts Article One-Pot Two-Step Organocatalytic Asymmetric Synthesis of Spirocyclic Piperidones via Wolff Rearrangement–Amidation–Michael– Hemiaminalization Sequence Yanqing Liu 1,†, Liang Ouyang 2,†, Ying Tan 3, Xue Tang 1, Jingwen Kang 1, Chunting Wang 2, Yaning Zhu 3, Cheng Peng 1,* and Wei Huang 1,* 1 State Key Laboratory Breeding Base of Systematic Research, Development and Utilization of Chinese Medicine, School of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, China; [email protected] (Y.L.); [email protected] (X.T.); [email protected] (J.K.) 2 State Key Laboratory of Biotherapy and Cancer Center, West China Hospital, Sichuan University, Chengdu 610041, China; [email protected] (L.O.); [email protected] (C.W.) 3 China Resources Sanjiu (Ya’an) Pharmaceutical Company Limited, Ya’an 625000, China; [email protected] (Y.T.); [email protected] (Y.Z.) * Correspondence: [email protected] (C.P.); [email protected] (W.H.); Tel.: +86-28-861-800-234 (C.P.); +86-28-861-800-231 (W.H.) † These authors contributed equally to this work. Academic Editor: Aurelio G. Csákÿ Received: 14 December 2016; Accepted: 22 January 2017; Published: 4 February 2017 Abstract: A highly enantioselective organocatalytic Wolff rearrangement–amidation–Michael– hemiaminalization stepwise reaction is described involving a cyclic 2-diazo-1,3-diketone, primary amine and α,β-unsaturated aldehyde. Product stereocontrol can be achieved by adjusting the sequence of steps in this one-pot multicomponent reaction. This approach was used to synthesize various optically active spirocyclic piperidones with three stereogenic centers and multiple functional groups in good yields up to 76%, moderate diastereoselectivities of up to 80:20 and high enantioselectivities up to 97%. -
Organocatalytic Asymmetric Synthesis Using Proline and Related Molecules
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Kochi University Repository HETEROCYCLES, Vol. , No. , , pp. -. © The Japan Institute of Heterocyclic Chemistry Received, , Accepted, , Published online, . COM-06- (Please do not delete.) ORGANOCATALYTIC ASYMMETRIC SYNTHESIS USING PROLINE AND RELATED MOLECULES. PART 2. Hiyoshizo Kotsuki,* Hideaki Ikishima, and Atsushi Okuyama Laboratory of Natural Product Chemistry, Faculty of Science, Kochi University, Akebono-cho, Kochi 780-8520, Japan e-mail: [email protected] Abstract – Organocatalytic asymmetric synthesis has been extensively studied and several important procedures for preparing optically active organic compounds have been developed. Research activities in this area have progressed rapidly in the last ten years. This review addresses the most significant advances in asymmetric synthesis using proline and related chiral organocatalysts, mainly from the viewpoint of synthetic applications. This includes (1) Mannich reactions, (2) Michael addition reactions, (3) α-oxidation, (4) α-amination, (5) α-sulfenylation / selenenylation, (6) α-halogenation, (7) cycloaddition reactions, and (8) miscellaneous reactions such as C-C bond formation, epoxidation / oxidation, and reduction. 1. MANNICH REACTIONS The Mannich reaction is one of the most important multi-component condensation reactions using aldehyde, ketone and amine for the preparation of β-amino carbonyl compounds. This type of reaction is considered to be analogous to aldol condensation, and hence several approaches using organocatalytic systems have been reported to date.1 In 2000, List and coworkers reported the first example of the asymmetric Mannich reaction using L-proline as an organocatalyst.2 For example, the reaction of acetone (excess), p-nitrobenzaldehyde, and p-anisidine in the presence of L-proline (35 mol%) gave the desired adduct in 50% yield with 94% ee (Scheme 1).