Chirality: the Handedness of Molecules
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Chirality in the Plane
Chirality in the plane Christian G. B¨ohmer1 and Yongjo Lee2 and Patrizio Neff3 October 15, 2019 Abstract It is well-known that many three-dimensional chiral material models become non-chiral when reduced to two dimensions. Chiral properties of the two-dimensional model can then be restored by adding appropriate two-dimensional chiral terms. In this paper we show how to construct a three-dimensional chiral energy function which can achieve two-dimensional chirality induced already by a chiral three-dimensional model. The key ingredient to this approach is the consideration of a nonlinear chiral energy containing only rotational parts. After formulating an appropriate energy functional, we study the equations of motion and find explicit soliton solutions displaying two-dimensional chiral properties. Keywords: chiral materials, planar models, Cosserat continuum, isotropy, hemitropy, centro- symmetry AMS 2010 subject classification: 74J35, 74A35, 74J30, 74A30 1 Introduction 1.1 Background A group of geometric symmetries which keeps at least one point fixed is called a point group. A point group in d-dimensional Euclidean space is a subgroup of the orthogonal group O(d). Naturally this leads to the distinction of rotations and improper rotations. Centrosymmetry corresponds to a point group which contains an inversion centre as one of its symmetry elements. Chiral symmetry is one example of non-centrosymmetry which is characterised by the fact that a geometric figure cannot be mapped into its mirror image by an element of the Euclidean group, proper rotations SO(d) and translations. This non-superimposability (or chirality) to its mirror image is best illustrated by the left and right hands: there is no way to map the left hand onto the right by simply rotating the left hand in the plane. -
Exp 1 - Separation of Limonene Name ______And Carvone, Due Date in Syllabus
CHEM 8M, Binder UCSC Experiment 1 - Separation of Carvone and Limonene Reading Assignment Mohrig Chapter 19.1, 19.2, 19.5a, 19.7 (Liquid / Column Chromatography) Review Topics: Polarimetry (Chapter 17), TLC (Chapter 18), GC (Chapter 20) Terpenes encompass a large family of organic compounds widespread in nature and occurring in all organisms from bacteria to mammals. They are prevalent in plants, where they act as volatile chemical messengers to attract insects and also to defend the plant’s territory. Mixtures of volatile and scented compounds, very rich in terpenes, can be obtained by steam distillation of plant tissues (as in the isolation of citrus oils experiment). These mixtures are called essential oils. Carvone is a naturally occurring ketone found in the essential oils of caraway, dill, and spearmint in association with other terpenoids such as limonene. Limonene is found in spearmint, caraway, lemon, and orange oils. Carvone and limonene, both monoterpenes, have only one stereogenic center and can exist in two enantiomeric forms: R and S. Enantiomers have the same physical and chemical properties, except that they interact differently with polarized light and other chiral molecules. The two enantiomers of carvone have different smells, one fresh and minty, and the other sweet and somehow unpleasant, especially at high concentrations. The olfactory receptors that line our nasal mucus are chiral ensembles with an exquisite sensitivity to the size, shape, and chirality of the odorant. Their interaction with individual enantiomers is often specific, resulting in the production of distinctive smells. The odor difference between the two enantiomeric forms of carvone is obvious to most people. -
– with Novozymes Enzymes for Biocatalysis
Biocatalysis Pregabalin case study Smarter chemical synthesis – with Novozymes enzymes for biocatalysis The new biocatalytic route results in process improvements, reduced organic solvent usage and substantial reduction of waste streams in Pregabalin production. Introduction Biocatalysis is the application of enzymes to replace chemical Using Lipolase®, a commercially available lipase, rac-2- catalysts in synthetic processes. In recent past, the use of carboxyethyl-3-cyano-5-methylhexanoic acid ethyl ester biocatalysis has gained momentum in the chemical and (1) can be resolved to form (S)-2-carboxyethyl-3-cyano-5- pharmaceutical industries. Today, it’s an important tool for methylhexanoic acid (2). Compared to the first-generation medicinal, process and polymer chemists to develop efficient process, this new route substantially improves process and highly attractive organic synthetic processes on an efficiency by setting the stereocenter early in the synthesis and industrial scale. enabling the facile racemization and reuse of (R)-1. The biocatalytic process for Pregabalin has been developed It outperforms the first-generation manufacturing process also by Pfizer to boost efficiency in Pregabalin production using by delivering higher yields of Pregabalin and by resulting in Novozymes Lipolase®. substantial reductions of waste streams, corresponding to a 5-fold decrease in the E-Factor from 86 to 17. Development of the biocatalytic process for Pregabalin involves four stages: • Screening to identify a suitable enzyme • Performing optimization of the enzymatic reaction to optimize throughput and reduce enzyme loading • Exploring a chemical pathway to preserve the enantiopurity of the material already obtained and lead to Pregabalin, and • Developing a procedure for the racemization of (R)-1 Process improvements thanks to the biocatalytic route Pregabalin chemical synthesis H Knovenagel CN condensation cyanation KOH 0 Et02C CO2Et Et02C CO2Et Et02C CO2Et CNDE (1) CN NH2 1. -
A Reminder… Chirality: a Type of Stereoisomerism
A Reminder… Same molecular formula, isomers but not identical. constitutional isomers stereoisomers Different in the way their Same connectivity, but different atoms are connected. spatial arrangement. and trans-2-butene cis-2-butene are stereoisomers. Chirality: A Type of Stereoisomerism Any object that cannot be superimposed on its mirror image is chiral. Any object that can be superimposed on its mirror image is achiral. Chirality: A Type of Stereoisomerism Molecules can also be chiral or achiral. How do we know which? Example #1: Is this molecule chiral? 1. If a molecule can be superimposed on its mirror image, it is achiral. achiral. Mirror Plane of Symmetry = Achiral Example #1: Is this molecule chiral? 2. If you can find a mirror plane of symmetry in the molecule, in any achiral. conformation, it is achiral. Can subject unstable conformations to this test. ≡ achiral. Finding Chirality in Molecules Example #2: Is this molecule chiral? 1. If a molecule cannot be superimposed on its mirror image, it is chiral. chiral. The mirror image of a chiral molecule is called its enantiomer. Finding Chirality in Molecules Example #2: Is this molecule chiral? 2. If you cannot find a mirror plane of symmetry in the molecule, in any conformation, it is chiral. chiral. (Or maybe you haven’t looked hard enough.) Pharmacology of Enantiomers (+)-esomeprazole (-)-esomeprazole proton pump inhibitor inactive Prilosec: Mixture of both enantiomers. Patent to AstraZeneca expired 2002. Nexium: (+) enantiomer only. Process patent coverage to 2007. More examples at http://z.umn.edu/2301drugs. (+)-ibuprofen (-)-ibuprofen (+)-carvone (-)-carvone analgesic inactive (but is converted to spearmint oil caraway oil + enantiomer by an enzyme) Each enantiomer is recognized Advil (Wyeth) is a mixture of both enantiomers. -
Influence of Chirality on the Electromagnetic Wave Electrical and Computer Engineering
Influence of Chirality on the Electromagnetic Wave Propagation: Unbounded Media And Chirowaveguides Priyá Dilipa Gaunço Dessai Dissertation submitted to obtain the Master Degree in Electrical and Computer Engineering Jury President: Professor José Manuel Bioucas Dias Supervisor: Professor Carlos Manuel dos Reis Paiva Co- Supervisor: Professor António Luís da Silva Topa Member Professor Sérgio de Almeida Matos December 2011 Abstract When a chiral medium interacts with the polarization state of an electromag- netic plane wave and couples selectively with either the left or right circularly polarized component, we call this property the optical activity. Since the beginning of the 19th century, the study of complex materials has intensied, and the chiral and bi-isotropic (BI) media have generated one of the most interesting and challenging subjects in the electromagnetic research groups in terms of theoretical problems and potential applications. This dissertation addresses the theoretical interaction between waves and the chiral media. From the study of chiral structures it is possible to observe the eect of the polarization rotation, the propagation modes and the cuto frequencies. The reection and transmission coecients between a simple isotropic media (SIM) and chiral media are also analyzed, as well as the relation between the Brewster angle and the chiral parameter. The BI planar structures are also analyzed for a closed guide, the parallel-plate chirowaveguide, and for a semi-closed guide, the grounded chiroslab. From these structures -
Chirality and Projective Linear Groups
DISCRETE MATHEMATICS Discrete Mathematics 131 (1994) 221-261 Chirality and projective linear groups Egon Schultea,l, Asia IviC Weissb**,’ “Depurtment qf Mathematics, Northeastern Uniwrsity, Boston, MA 02115, USA bDepartment qf Mathematics and Statistics, York University, North York, Ontario, M3JIP3, Camda Received 24 October 1991; revised 14 September 1992 Abstract In recent years the term ‘chiral’ has been used for geometric and combinatorial figures which are symmetrical by rotation but not by reflection. The correspondence of groups and polytopes is used to construct infinite series of chiral and regular polytopes whose facets or vertex-figures are chiral or regular toroidal maps. In particular, the groups PSL,(Z,) are used to construct chiral polytopes, while PSL,(Z,[I]) and PSL,(Z,[w]) are used to construct regular polytopes. 1. Introduction Abstract polytopes are combinatorial structures that generalize the classical poly- topes. We are particularly interested in those that possess a high degree of symmetry. In this section, we briefly outline some definitions and basic results from the theory of abstract polytopes. For details we refer to [9,22,25,27]. An (abstract) polytope 9 ofrank n, or an n-polytope, is a partially ordered set with a strictly monotone rank function rank( .) with range { - 1, 0, . , n}. The elements of 9 with rankj are called j-faces of 8. The maximal chains (totally ordered subsets) of .P are calledJags. We require that 6P have a smallest (- 1)-face F_ 1, a greatest n-face F,, and that each flag contains exactly n+2 faces. Furthermore, we require that .Y be strongly flag-connected and that .P have the following homogeneity property: when- ever F<G, rank(F)=j- 1 and rank(G)=j+l, then there are exactly two j-faces H with FcH-cG. -
Enantioselective Synthesis of the (1S,5R)-Enantiomer of Litseaverticillols a and B
Biosci. Biotechnol. Biochem., 70 (10), 2564–2566, 2006 Note Enantioselective Synthesis of the (1S,5R)-Enantiomer of Litseaverticillols A and B y Akira MORITA, Hiromasa KIYOTA, and Shigefumi KUWAHARA Laboratory of Applied Bioorganic Chemistry, Graduate School of Agricultural Science, Tohoku University, Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai 981-8555, Japan Received May 8, 2006; Accepted May 31, 2006; Online Publication, October 7, 2006 [doi:10.1271/bbb.60253] An enantioselective synthesis of the (1S,5R)-enan- which have recently culminated in the first enantiose- tiomer of litseaverticillols A and B was accomplished in lective total synthesis of (1R,5S)-(À)-1 and (1R,5S)-(À)- line with our previously reported synthetic pathway for 2.4) In this note, we describe the synthesis of their their (1R,5S)-enantiomer. The use of ‘‘EtSCeCl2’’ pre- enantiomers directed toward an evaluation of the differ- pared from EtSLi and CeCl3, instead of previously ence in biological activity between the enantiomers of employed EtSLi itself, for the formation of thiol ester litseaverticillols A and B. intermediates prevented any undesirable epimerization Our synthesis of (1S,5R)-1 and (1S,5R)-2 basically occurring in the process. followed our previous synthesis of their corresponding enantiomers, (1R,5S)-1 and (1R,5S)-2, respectively,4) Key words: litseaverticillol; enantioselective synthesis; except that (R)-4-benzyloxazolidin-2-one was employed sesquiterpenoid; anti-HIV as the source of chirality, instead of its (S)-form used in the previous synthesis. Homogeranic -
Locally Enhanced and Tunable Optical Chirality in Helical Metamaterials
hv photonics Article Locally Enhanced and Tunable Optical Chirality in Helical Metamaterials Philipp Gutsche 1,*, Raquel Mäusle 1 and Sven Burger 1,2 1 Zuse Institute Berlin, Takustr. 7, 14195 Berlin, Germany; [email protected] (R.M.); [email protected] (S.B.) 2 JCMwave GmbH, Bolivarallee 22, 14050 Berlin, Germany * Correspondence: [email protected]; Tel.: +49-30-841-85-203 Received: 31 October 2016; Accepted: 18 November 2016; Published: 23 November 2016 Abstract: We report on a numerical study of optical chirality. Intertwined gold helices illuminated with plane waves concentrate right and left circularly polarized electromagnetic field energy to sub-wavelength regions. These spots of enhanced chirality can be smoothly shifted in position and magnitude by varying illumination parameters, allowing for the control of light-matter interactions on a nanometer scale. Keywords: metamaterials; optical chirality; computational nano-optics 1. Introduction Helical metamaterials strongly impact the optical response of incident circularly (CPL) and linearly polarized light. They serve as efficient circular polarizers [1] and are candidates for chiral near-field sources [2]. Both, advancement of fabrication techniques [3–5] and design which employs fundamental physical properties [6] have significantly increased the performance of these complex structures. Most experimental, numerical and theoretical studies focus on the far-field response of helical metamaterials. Nevertheless, near-field interaction of light and chiral matter is expected to be enhanced in chiral near-fields. Recently, the quantity of optical chirality has been introduced quantifying this phenomenon [7]. In the weak-coupling regime, the interplay of electromagnetic fields and chiral molecules, which are not superimposable with their mirror image, is directly proportional to this near-field measure [8]. -
Lecture 3: Stereochemistry and Drugs Key Objectives: 1
Lecture 3: Stereochemistry and drugs Key objectives: 1. Be able to explain the role of stereochemistry in drug action or metabolism 2. Be able to identify a chiral center (or centers) in a drug 3. Be able to explain the difference between enantiomers and diastereomers Value of chirality and stereochemistry: Chirality as expressed through stereoisomers increases the specificity of molecule recognition and signaling. Like a key in a lock, or a hand in a glove. Some useful definitions: Chirality (and chiral centers): An object (such as a molecule) that is asymmetric and therefore not superimposable on its own image. Chiral centers are the most common features within molecules that give rise to chirality. Stereoisomer: A molecule that possesses at least one chiral center (or center of chirality). Enantiomers: A type of stereoisomer that exists in mirror image forms. See Figure 1. Diastereomers: A type of stereoisomer that possesses more than one chiral center. Stereospecific: A term used to describe a stereochemical property that one isomer possesses but the other does not. For example, the stereospecific metabolism of the S-enantiomer of a compound by an enzyme but the R-enantiomer is not metabolized by that enzyme. Stereoselective: A term used to describe a stereochemical property that is shared by both stereoisomers, but the property is greater in one isomer than the other. For example, the stereoselective binding of the R-enantiomer for a receptor indicates that the S-enantiomer also binds but not as avidly as the R-enantiomer. Enantiomers Figure 1: For enantiomers, many times we use the example of our left and right hands to demonstrate their asymmetry. -
Diastereomers Diastereomers
Diastereomers Diastereomers: Stereoisomers that are not mirror images. enantiomer (R) (S) (S) (R) diastereomers diastereomer diastereomer enantiomer (R) (S) (R) (S) Diastereomers Diastereomers: Stereoisomers that are not mirror images. (R) enantiomer (S) (S) (R) diastereomer To draw the enantiomer of a molecule with chiral centers, invert stereochemistry at all chiral centers. (R) To draw a diastereomer of a molecule (R) with chiral centers, invert stereochemistry at only some chiral centers. Meso Compounds Meso: A molecule that contains chiral centers, but is achiral. 3 Are these molecules chiral? (R) (S) (These are diff eren t f rom th e 3 molecules I just showed; they have 2 -Cl’s, rather than 1 -Cl & 1 -OH. enantiomer (R) (S) (R) (S) These molecules are chiral mirror images of one another. (R,R) and (S,S) are not the same. Meso Compounds Meso: A molecule that contains chiral centers, but is achiral. 3 enantiomer ? (R) (S) (S) (R) no! 3 same molecule! enantiomer (R) (S) (R) (S) Meso Compounds Meso: A molecule that contains chiral centers, but is achiral. 3 enantiomer ? (R) (S) (S) (R) no! 3 same molecule! If a molecule • contains the same number of (R) and (S) stereocenters, and • those stereocenters have identical groups attached, then the molecule is achiral and meso. Meso Compounds Meso: A molecule that contains chiral centers, but is achiral. 3 same molecule (R) (S) (S) (R) 3 meso diastereomers meso diastereomer diastereomer enantiomer (R) (S) (R) (S) chiral chiral Properties of Enantiomers Most physical properties of enantiomers are identical. diethyl-(R,R)-tartrate diethyl-(S,S)-tartrate boiling point 280 °C 280 °C melting point 19 °C 19 °C density 1.204 g/mL 1.204 g/mL refractive index 1.447 1.447 i.e., chirality does not affect most physical properties. -
Enantiomers & Diastereomers
Chapter 5 Stereochemistry Chiral Molecules Ch. 5 - 1 1. Chirality & Stereochemistry An object is achiral (not chiral) if the object and its mirror image are identical Ch. 5 - 2 A chiral object is one that cannot be superposed on its mirror image Ch. 5 - 3 1A. The Biological Significance of Chirality Chiral molecules are molecules that cannot be superimposable with their mirror images O O ● One enantiomer NH causes birth defects, N O the other cures morning sickness O Thalidomide Ch. 5 - 4 HO NH HO OMe Tretoquinol OMe OMe ● One enantiomer is a bronchodilator, the other inhibits platelet aggregation Ch. 5 - 5 66% of all drugs in development are chiral, 51% are being studied as a single enantiomer Of the $475 billion in world-wide sales of formulated pharmaceutical products in 2008, $205 billion was attributable to single enantiomer drugs Ch. 5 - 6 2. Isomerisom: Constitutional Isomers & Stereoisomers 2A. Constitutional Isomers Isomers: different compounds that have the same molecular formula ● Constitutional isomers: isomers that have the same molecular formula but different connectivity – their atoms are connected in a different order Ch. 5 - 7 Examples Molecular Constitutional Formula Isomers C4H10 and Butane 2-Methylpropane Cl Cl C3H7Cl and 1-Chloropropane 2-Chloropropane Ch. 5 - 8 Examples Molecular Constitutional Formula Isomers CH O CH C H O OH and 3 3 2 6 Ethanol Methoxymethane O OCH and 3 C H O OH 4 8 2 O Butanoic acid Methyl propanoate Ch. 5 - 9 2B. Stereoisomers Stereoisomers are NOT constitutional isomers Stereoisomers have their atoms connected in the same sequence but they differ in the arrangement of their atoms in space. -
Unit 3 – Stereochemistry
Stereochemistry Stereochemistry refers to the 3-dimensional properties and reactions of molecules. It has its own language and terms that need to be learned in order to fully communicate and understand the concepts. New vocabulary and concepts Handedness Chirality Fischer Projections Depicting Asymmetric Carbons (R) and (S) Nomenclature Enantiomers Diastereomers Optical Activity Stereochemistry Isomers: Different compounds that have the same molecular formula (composition) but different connectivity. Two classes: - Structural (constitutional) isomers: same molecular formula but different bonding sequence - Stereoisomers: same molecular formula, same bonding sequence, but different arrangement in space. Handedness…..Chirality Handedness” right glove doesn’t fit the left hand. Superimposable: A term that describes the ability to precisely overlap one object over another. Only identical objects are superposable, everything else is non-superposable superimposable nonsuperimposable Chiral molecules & Chirality Center Chemical substances can be handed, and they are called chiral. Chiral Molecules: are molecules that are nonsuperimposable on their mirror image. A carbon atom that is bonded to four chiral carbon atom different groups is called chairal carbon atom or stereocenter (asymmetric carbon atom). It is sp3 carbon and labeled with a strict. Achiral: A molecule is achiral if it is superimposable on its mirror image H H Cl Cl Practices on Asymmetric Carbons Example: Identify all asymmetric carbons present in the following compounds. Br Br H OH H H CH2CH3 H C *C C C H Br CH3 * H H H H H H H H H3C Br CH3 * * OH * CH CHCOOH* 3 * * * Fischer Projections: ➢ It is a two-dimensional representation of a three-dimensional organic molecule by projection.