Description of Two New Fossil Zygentoma from Mexico and the Dominican Republic
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The Mitochondrial Genomes of Palaeopteran Insects and Insights
www.nature.com/scientificreports OPEN The mitochondrial genomes of palaeopteran insects and insights into the early insect relationships Nan Song1*, Xinxin Li1, Xinming Yin1, Xinghao Li1, Jian Yin2 & Pengliang Pan2 Phylogenetic relationships of basal insects remain a matter of discussion. In particular, the relationships among Ephemeroptera, Odonata and Neoptera are the focus of debate. In this study, we used a next-generation sequencing approach to reconstruct new mitochondrial genomes (mitogenomes) from 18 species of basal insects, including six representatives of Ephemeroptera and 11 of Odonata, plus one species belonging to Zygentoma. We then compared the structures of the newly sequenced mitogenomes. A tRNA gene cluster of IMQM was found in three ephemeropteran species, which may serve as a potential synapomorphy for the family Heptageniidae. Combined with published insect mitogenome sequences, we constructed a data matrix with all 37 mitochondrial genes of 85 taxa, which had a sampling concentrating on the palaeopteran lineages. Phylogenetic analyses were performed based on various data coding schemes, using maximum likelihood and Bayesian inferences under diferent models of sequence evolution. Our results generally recovered Zygentoma as a monophyletic group, which formed a sister group to Pterygota. This confrmed the relatively primitive position of Zygentoma to Ephemeroptera, Odonata and Neoptera. Analyses using site-heterogeneous CAT-GTR model strongly supported the Palaeoptera clade, with the monophyletic Ephemeroptera being sister to the monophyletic Odonata. In addition, a sister group relationship between Palaeoptera and Neoptera was supported by the current mitogenomic data. Te acquisition of wings and of ability of fight contribute to the success of insects in the planet. -
Millipedes (Diplopoda) from Caves of Portugal
A.S.P.S. Reboleira and H. Enghoff – Millipedes (Diplopoda) from caves of Portugal. Journal of Cave and Karst Studies, v. 76, no. 1, p. 20–25. DOI: 10.4311/2013LSC0113 MILLIPEDES (DIPLOPODA) FROM CAVES OF PORTUGAL ANA SOFIA P.S. REBOLEIRA1 AND HENRIK ENGHOFF2 Abstract: Millipedes play an important role in the decomposition of organic matter in the subterranean environment. Despite the existence of several cave-adapted species of millipedes in adjacent geographic areas, their study has been largely ignored in Portugal. Over the last decade, intense fieldwork in caves of the mainland and the island of Madeira has provided new data about the distribution and diversity of millipedes. A review of millipedes from caves of Portugal is presented, listing fourteen species belonging to eight families, among which six species are considered troglobionts. The distribution of millipedes in caves of Portugal is discussed and compared with the troglobiont biodiversity in the overall Iberian Peninsula and the Macaronesian archipelagos. INTRODUCTION All specimens from mainland Portugal were collected by A.S.P.S. Reboleira, while collectors of Madeiran speci- Millipedes play an important role in the decomposition mens are identified in the text. Material is deposited in the of organic matter, and several species around the world following collections: Zoological Museum of University of have adapted to subterranean life, being found from cave Copenhagen, Department of Animal Biology, University of entrances to almost 2000 meters depth (Culver and Shear, La Laguna, Spain and in the collection of Sofia Reboleira, 2012; Golovatch and Kime, 2009; Sendra and Reboleira, Portugal. 2012). Although the millipede faunas of many European Species were classified according to their degree of countries are relatively well studied, this is not true of dependence on the subterranean environment, following Portugal. -
Automated High Throughput Animal CO1 Metabarcode Classification
www.nature.com/scientificreports OPEN Automated high throughput animal CO1 metabarcode classifcation Teresita M. Porter 1,2 & Mehrdad Hajibabaei1 We introduce a method for assigning names to CO1 metabarcode sequences with confdence scores in Received: 16 November 2017 a rapid, high-throughput manner. We compiled nearly 1 million CO1 barcode sequences appropriate for Accepted: 1 February 2018 classifying arthropods and chordates. Compared to our previous Insecta classifer, the current classifer Published: xx xx xxxx has more than three times the taxonomic coverage, including outgroups, and is based on almost fve times as many reference sequences. Unlike other popular rDNA metabarcoding markers, we show that classifcation performance is similar across the length of the CO1 barcoding region. We show that the RDP classifer can make taxonomic assignments about 19 times faster than the popular top BLAST hit method and reduce the false positive rate from nearly 100% to 34%. This is especially important in large-scale biodiversity and biomonitoring studies where datasets can become very large and the taxonomic assignment problem is not trivial. We also show that reference databases are becoming more representative of current species diversity but that gaps still exist. We suggest that it would beneft the feld as a whole if all investigators involved in metabarocoding studies, through collaborations with taxonomic experts, also planned to barcode representatives of their local biota as a part of their projects. Ecological investigations, such as environmental biomonitoring, require the identifcation of individual spec- imens. Tis is normally done for each individual specimen by comparing suites of morphological characters with those described in taxonomic keys. -
Is Ellipura Monophyletic? a Combined Analysis of Basal Hexapod
ARTICLE IN PRESS Organisms, Diversity & Evolution 4 (2004) 319–340 www.elsevier.de/ode Is Ellipura monophyletic? A combined analysis of basal hexapod relationships with emphasis on the origin of insects Gonzalo Giribeta,Ã, Gregory D.Edgecombe b, James M.Carpenter c, Cyrille A.D’Haese d, Ward C.Wheeler c aDepartment of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA bAustralian Museum, 6 College Street, Sydney, New South Wales 2010, Australia cDivision of Invertebrate Zoology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA dFRE 2695 CNRS, De´partement Syste´matique et Evolution, Muse´um National d’Histoire Naturelle, 45 rue Buffon, F-75005 Paris, France Received 27 February 2004; accepted 18 May 2004 Abstract Hexapoda includes 33 commonly recognized orders, most of them insects.Ongoing controversy concerns the grouping of Protura and Collembola as a taxon Ellipura, the monophyly of Diplura, a single or multiple origins of entognathy, and the monophyly or paraphyly of the silverfish (Lepidotrichidae and Zygentoma s.s.) with respect to other dicondylous insects.Here we analyze relationships among basal hexapod orders via a cladistic analysis of sequence data for five molecular markers and 189 morphological characters in a simultaneous analysis framework using myriapod and crustacean outgroups.Using a sensitivity analysis approach and testing for stability, the most congruent parameters resolve Tricholepidion as sister group to the remaining Dicondylia, whereas most suboptimal parameter sets group Tricholepidion with Zygentoma.Stable hypotheses include the monophyly of Diplura, and a sister group relationship between Diplura and Protura, contradicting the Ellipura hypothesis.Hexapod monophyly is contradicted by an alliance between Collembola, Crustacea and Ectognatha (i.e., exclusive of Diplura and Protura) in molecular and combined analyses. -
The Role of Microhabitats in Structuring Cave Invertebrate Communities in Guatemala Gabrielle S.M
International Journal of Speleology 49 (2) 161-169 Tampa, FL (USA) May 2020 Available online at scholarcommons.usf.edu/ijs International Journal of Speleology Off icial Journal of Union Internationale de Spéléologie The role of microhabitats in structuring cave invertebrate communities in Guatemala Gabrielle S.M. Pacheco 1*, Marconi Souza Silva 1, Enio Cano 2, and Rodrigo L. Ferreira 1 1Universidade Federal de Lavras, Departamento de Ecologia e Conservação, Setor de Biodiversidade Subterrânea, Centro de Estudos em Biologia Subterrânea, Caixa Postal 3037, CEP 37200-900, Lavras, Minas Gerais, Brasil 2Escuela de Biología, Facultad de Ciencias Químicas y Farmacia, Universidad de San Carlos de Guatemala, Ciudad Universitaria, Zona 12, 01012, Guatemala City, Guatemala Abstract: Several studies have tried to elucidate the main environmental features driving invertebrate community structure in cave environments. They found that many factors influence the community structure, but rarely focused on how substrate types and heterogeneity might shape these communities. Therefore, the objective of this study was to assess which substrate features and whether or not substrate heterogeneity determines the invertebrate community structure (species richness and composition) in a set of limestone caves in Guatemala. We hypothesized that the troglobitic fauna responds differently to habitat structure regarding species richness and composition than non-troglobitic fauna because they are more specialized to live in subterranean habitats. Using 30 m2 transects, the invertebrate fauna was collected and the substrate features were measured. The results showed that community responded to the presence of guano, cobbles, boulders, and substrate heterogeneity. The positive relationship between non-troglobitic species composition with the presence of guano reinforces the importance of food resources for structuring invertebrate cave communities in Guatemalan caves. -
Sequence Analyses of the 16S Rrna of Epigean and Hypogean Diplurans in the Jumandi Cave Area, Ecuador
Espinasa, Christoforides & Morfessis Sequence analyses of the 16S rRNA of epigean and hypogean diplurans in the Jumandi Cave area, Ecuador Luis Espinasa1,2, Sara Christoforides1 & Stella E. Morfessis1 1 School of Science, Marist College, 3399 North Rd, Poughkeepsie, New York 12601, USA 2 [email protected] (corresponding author) Key Words: Diplura, Jumandi Cave, Ecuador, troglophile, troglobite, Arthropoda, Insecta, surface, cave, depigmentation, eyeless, Nicoletiidae. One of the most visited caves in Ecuador is Jumandi Cave (0o 52.5028’ S, 77o 47.5587’ W). Jumandi Cave is 660 meters above sea level, 4 kilometers north of the village of Archidona, and 14 km north of the town of Tena in the Napo Province (Peck 1985). The cave is a single stream passage with side corridors. For a full description of the cave and a map see Peck (1985). Temperature inside the cave is 22 °C (Peck 1985). Bats and bat guano is scarce throughout the cave. A stream takes up most of the cave floor and brings in considerable plant debris that may be the food source for the aquatic invertebrate and vertebrate community. The most distinguished inhabitant of this cave is the endemic cave-adapted catfish, Astroblepus pholeter (Collette, 1962) (Collette 1962; Haspel et al. 2012). Stewart Peck, professor and entomologist at the University of Carleton, visited Jumandi Cave in 1984 and conducted a bioinventory. He reported the presence of 22 species of invertebrates as well as the Astroblepus catfish (Peck 1985). According to Peck, 19 species of the invertebrates were troglophiles and three were trogloxenes. The only reported troglobiont was Astroblepus pholeter (Peck 1985). -
New Species of Short Range Endemic Troglobitic Silverfish (Zygentoma
RECORDS OF THE WESTERN AUSTRALIAN MUSEUM 27 101–116 (2012) New species of short range endemic troglobitic silverfi sh (Zygentoma: Nicoletiidae) from subterranean habitats in Western Australia’s semi-arid Pilbara region Graeme B. Smith1, Stefan M. Eberhard2, Giulia Perina2 and Terrie Finston3 1 Australian Museum, 6 College St, Sydney, New South Wales 2010, Australia. Email: [email protected]. Author for correspondence. 2 Subterranean Ecology Pty Ltd, Suite 8, 37 Cedric Street, Stirling, Western Australia 6021, Australia. Email: [email protected] 3 School of Animal Biology, University of Western Australia, 35 Stirling Highway, Crawley, Western Australia 6009, Australia. Email: terrie.fi [email protected] ABSTRACT – Two new troglobitic species of silverfi sh of the genus Trinemura Silvestri are described from the semi-arid Pilbara region of Western Australia. A third species is recorded but not described due to the lack of a mature male specimen. The deep subterranean habitat of these new species is developed within weathered rocks of banded iron formation. The surveyed distributions of each species appears confi ned to proximal landforms which are topographically and geologically isolated from each other. Molecular genetic evidence (12S) supports the morphological defi nition and phylogeographic separation. KEYWORDS: hypogean, troglobite, iron ore formations INTRODUCTION 2006). The remaining named species are recorded from Silverfi sh of the family Nicoletiidae are generally endogean habitats. collected in caves and other soil-related habitats such Subterranean invertebrates that are restricted to as under stones or logs; they are primitively eyeless and hypogean environments such as caves are classifi ed generally lack pigmentation. Smith (1998) reviewed as troglobites. -
Tricholepidion Gertschi (Insecta: Zygentoma)
Hindawi Publishing Corporation Psyche Volume 2011, Article ID 563852, 8 pages doi:10.1155/2011/563852 Research Article Ovipositor Internal Microsculpture in the Relic Silverfish Tricholepidion gertschi (Insecta: Zygentoma) Natalia A. Matushkina Department of Zoology, Biological Faculty, Kyiv National University, Vul. Volodymirs’ka 64, 01033 Kyiv, Ukraine Correspondence should be addressed to Natalia A. Matushkina, [email protected] Received 19 January 2011; Accepted 29 March 2011 Academic Editor: John Heraty Copyright © 2011 Natalia A. Matushkina. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The microsculpture on the inside surface of the ovipositor of the relic silverfish Tricholepidion gertschi (Wygodzinsky, 1961) (Insecta: Zygentoma) was studied with scanning electronic microscopy for the first time. Both the first and second valvulae of T. gertschi bear rather diverse sculptural elements: (1) microtrichia of various shapes and directed distally, (2) longitudinal ridges, (3) smooth regions, and (4) scattered dome-shaped sensilla. As in several other insects, the distally directed microtrichia most likely facilitate unidirectional movement of the egg during egg laying. Involvement of the ovipositor internal microsculpture also in the uptake of male genital products is tentatively suggested. From a phylogenetic point of view, the presence of internal microsculpture appears an ancestral peculiarity of the insect ovipositor. 1. Introduction the only insect species whose ordinal classification remains uncertain)” [12, Page 220]. The “living fossil” Tricholepidion gertschi Wygodzinsky, 1961, The ovipositor that comprises gonapophyses of the 8th is the sole extant member of the silverfish family Lepi- and 9th abdominal segments is considered a synapomorphy dotrichidae, which inhabits small isolated regions of coastal of the Insecta (e.g., [14]). -
A New Species of Cave Adapted Nicoletiid (Zygentoma: Insecta) from Sistema Huautla, Oaxaca, Mexico: the Tenth Deepest Cave in the World
L. Espinasa and N.H. Vuong ± A new species of cave adapted Nicoletiid (Zygentoma: Insecta) from Sistema Huautla, Oaxaca, Mexico: the tenth deepest cave in the world. Journal of Cave and Karst Studies, v. 70, no. 2, p. 73±77. A NEW SPECIES OF CAVE ADAPTED NICOLETIID (ZYGENTOMA: INSECTA) FROM SISTEMA HUAUTLA, OAXACA, MEXICO: THE TENTH DEEPEST CAVE IN THE WORLD LUIS ESPINASA AND NGUYET H. VUONG School of Science, Marist College, 3399 North Road, Poughkeepsie, NY 12601, [email protected] and [email protected] Abstract: Anelpistina specusprofundi, n. sp., is described and separated from other species of the subfamily Cubacubaninae (Nicoletiidae: Zygentoma: Insecta). The specimens were collected in SoÂtano de San AgustõÂn and in Nita Ka (Huautla system) in Oaxaca, MeÂxico. This cave system is currently the tenth deepest in the world. It is likely that A.specusprofundi is the sister species of A.asymmetrica from nearby caves in Sierra Negra, Puebla. The new species of nicoletiid described here may be the key link that allows for a deep underground food chain with specialized, troglobitic, and comparatively large predators suchas thetarantula spider Schizopelma grieta and the 70 mm long scorpion Alacran tartarus that inhabit the bottom of Huautla system. INTRODUCTION 760 m, but no human sized passage was found that joined it into the system. The last relevant exploration was in Among international cavers and speleologists, caves 1994, when an international team of 44 cavers and divers that surpass a depth of minus 1,000 m are considered as pushed its depth to 1,475 m. For a full description of the imposing as mountaineers deem mountains that surpass a caves of the Huautla Plateau, see the bulletins from these height of 8,000 m in the Himalayas. -
Luis Espinasa Selected Publications Herman, A., Brandvain, Y., Weagley
Luis Espinasa Selected Publications Herman, A., Brandvain, Y., Weagley, J., Jeffery, W.R., Keene, A.C., Kono, T.J.Y., Bilandžija, H., Borowsky, R.. Espinasa, L.. O'Quin, K., Ornelas-García, C.P., Yoshizawa, M., Carlson, B., Maldonado, E., Gross, J.B., Cartwright, R.A., Rohner, N., Warren, W.C., and McGaugh. S.E. (2018) The role of gene flow in rapid and repeated evolution of cave related traits in Mexican tetra, Astyanax mexicanus. Molecular Ecology. bioRxiv https://doi.org/10.1101/335182 Espinasa, L., Robinson, J., and Espinasa, M. (2018) Mc1r gene in Astroblepus pholeter and Astyanax mexicanus: Convergent regressive evolution of pigmentation across cavefish species. Developmental Biology 441: 305-310 Espinasa, L., Hoese, G., Toulkeridis, T., and Toomey, R. (2018) Corroboration that theMc1r Gly/Ser mutation correlates with the phenotypic expression of pigmentation in Astroblepus. Developmental Biology 441: 311-312 Blin, M., Tine, E., Meister, L., Elipot, Y., Bibliowicz, J., Espinasa, L., and Rétaux, S. (2018) Developmental evolution and developmental plasticity of the olfactory epithelium and olfactory skills in Mexican cavefish. Developmental Biology 441: 242-251 Espinasa, L., Robinson, J., Soares, D., Hoese, G., Toulkeridis, T., and Toomey, R. (2018) Troglomorphic features of Astroblepus pholeter, a cavefish from Ecuador, and possible introgressive hybridization. Subterranean Biology 27:17-29 Kopp, J., Avasthi, S., and Espinasa, L. (2018) Phylogeographical convergence between Astyanax cavefish and mysid shrimps in the Sierra de El Abra, Mexico. Subterranean Biology 26: 39-53 Espinasa, L., Legendre, L., Fumey, F., Blin, M., Rétaux, S., and Espinasa, M. (2018) A new cave locality for Astyanax cavefish in Sierra de El Abra, Mexico. -
Notas Sobre Una Nueva Especie Cavernícola De Thysanura Nicoletiidae De La Toca Da Boa Vista (Estado De Bahia, Brasil)
Notas sobre una nueva especie cavernícola de Thysanura Nicoletiidae de la Toca da Boa Vista (Estado de Bahia, Brasil) Notes about a new cave-dwelling species of Thysanura Nicoletiidae from Boa Vista cave (Bahia state, Brazil) (GALAN, C. 2000). Sociedad de Ciencias Aranzadi. Alto Zorroaga 31, 20014 San Sebastián - Spain. & Sociedad Venezolana de Espeleología. Apartado 47.334, Caracas 1041-A, Venezuela. (Septiembre 2000). Bol.SVE, 34: 8 pp. Areas del artículo Inicio Resumen Introducción Área de Estudio y Datos Ecológicos Descripción Discusión Agradecimientos Bibliografía Leyenda de las figuras Página 1 RESUMEN Se describe una nueva especie cavernícola de Thysanura Nicoletiidae, Cubacubana spelaea, colectada en la zona profunda de la Toca da Boa Vista, la cavidad más grande de Sudamérica, durante una expedición del Grupo Bambuí de Pesquisas Espeleológicas. Datos biológicos y ecológicos son presentados. Se comenta las afinidades de esta especie con la forma troglobia Cubacubana negreai, de cuevas de Cuba. Palabras clave: Bioespeleología, fauna cavernícola, ecología, Insecta, Thysanura, Brasil. ABSTRACT In this work is described a new cave-dwelling species of Thysanura Nicoletiidae, Cubacubana spelaea, colected in the deep-cave environment of Toca da Boa Vista, the longest cave in South America, during a Expedition of the Grupo Bambuí de Pesquisas Espeleológicas. Biological and ecological data are noted. I comment the affinity of this species with the troglobitic Cubacubana negreai from caves of Cuba. Key Words: Biospeleology, cavernicolous fauna, ecology, Insecta, Thysanura, Brazil. Página 2 INTRODUCCIÓN Los Thysanura s. str. (= Zygentoma) constituyen uno de los más primitivos órdenes de insectos, siendo conocidas formas fósiles desde el Carbonífero Superior. Se caracterizan por su cuerpo elongado, aplanado dorso-ventralmente, carente de alas, con tres segmentos torácicos y 10 abdominales, patas con grandes coxas, dos muy largas antenas y tres largos filamentos o cercos caudales. -
Arthropods of Public Health Significance in California
ARTHROPODS OF PUBLIC HEALTH SIGNIFICANCE IN CALIFORNIA California Department of Public Health Vector Control Technician Certification Training Manual Category C ARTHROPODS OF PUBLIC HEALTH SIGNIFICANCE IN CALIFORNIA Category C: Arthropods A Training Manual for Vector Control Technician’s Certification Examination Administered by the California Department of Health Services Edited by Richard P. Meyer, Ph.D. and Minoo B. Madon M V C A s s o c i a t i o n of C a l i f o r n i a MOSQUITO and VECTOR CONTROL ASSOCIATION of CALIFORNIA 660 J Street, Suite 480, Sacramento, CA 95814 Date of Publication - 2002 This is a publication of the MOSQUITO and VECTOR CONTROL ASSOCIATION of CALIFORNIA For other MVCAC publications or further informaiton, contact: MVCAC 660 J Street, Suite 480 Sacramento, CA 95814 Telephone: (916) 440-0826 Fax: (916) 442-4182 E-Mail: [email protected] Web Site: http://www.mvcac.org Copyright © MVCAC 2002. All rights reserved. ii Arthropods of Public Health Significance CONTENTS PREFACE ........................................................................................................................................ v DIRECTORY OF CONTRIBUTORS.............................................................................................. vii 1 EPIDEMIOLOGY OF VECTOR-BORNE DISEASES ..................................... Bruce F. Eldridge 1 2 FUNDAMENTALS OF ENTOMOLOGY.......................................................... Richard P. Meyer 11 3 COCKROACHES ...........................................................................................