A New Approach in Deciphering Early Protist Paleobiology and Evolution: Combined Microscopy and Microchemistry of Single Proterozoic Acritarchs ⁎ E.J

Total Page:16

File Type:pdf, Size:1020Kb

A New Approach in Deciphering Early Protist Paleobiology and Evolution: Combined Microscopy and Microchemistry of Single Proterozoic Acritarchs ⁎ E.J Review of Palaeobotany and Palynology 139 (2006) 1–15 www.elsevier.com/locate/revpalbo A new approach in deciphering early protist paleobiology and evolution: Combined microscopy and microchemistry of single Proterozoic acritarchs ⁎ E.J. Javaux a, , C.P. Marshal b a Department of Geology, Geophysics, Oceanography, University of Liège, 4000 Liège Sart-Tilman, Belgium b Australian Centre for Astrobiology, Macquarie University, NSW 2109 Sydney, Australia Available online 3 March 2006 Abstract Beside a few cases, the biological affinities of Proterozoic and Paleozoic acritarchs remain, by definition, largely unknown. However, these fossils record crucial steps in the early evolution of microorganisms and diversification of complex ecosystems. We present how combining microscopy (light microscopy, scanning and transmitted electron microscopy) with microchemical analyses of individual microfossils may offer further insights into the paleobiology and evolution of early microorganisms. We use our ongoing work on early Mesoproterozoic and Neoproterozoic assemblages, as well as other published work, as examples to illustrate how this approach may clarify the evolution of early microorganisms and we underline how useful this approach could be for palynologists working on younger material. Such a multidisciplinary approach offers new possibilities to investigate the biological affinities of acritarchs and the record of early life on Earth and beyond. © 2006 Elsevier B.V. All rights reserved. Keywords: acritarchs; biological affinities; microscopy; microchemistry; Proterozoic; Paleozoic 1. Introduction acritarchs record crucial steps in the early evolution and diversification of the biosphere. Identifying the Acritarchs are organic-walled microfossils of un- biological affinities of these microscopic organisms will known biological affinities. They are conventionally clarify Proterozoic and Paleozoic microbial paleobiol- interpreted as algal cysts but most probably include a ogy and food webs (see Butterfield, 1997, 2000 for larger range of organisms such as prokaryotic sheaths, discussions on plankton food webs and ecological heterotroph protists or even parts of multicellular beings tiering in the late Proterozoic). It will also contribute (Van Waveren, 1992; Martin, 1993; Colbath and to phylogenetic reconstructions and improve our Grenfell, 1995; Butterfield, 2005). Biologists easily understanding of early evolutionary mechanisms and differentiate between prokaryotic and eukaryotic organ- patterns, and the early interactions between environment isms using molecular and cell biology, but these and life. characters rarely survive fossilization and so are not Comparative biology is useful when organisms generally available to the paleontologist. However, display characteristic morphological attributes, but this rarely occurs among acritarchs (for example early ⁎ Corresponding author. Fax: +32 4 366 2921. dinoflagellates might not show tabulation). Most acri- E-mail address: [email protected] (E.J. Javaux). tarchs have relatively simple morphologies; basically a 0034-6667/$ - see front matter © 2006 Elsevier B.V. All rights reserved. doi:10.1016/j.revpalbo.2006.01.005 2 E.J. Javaux, C.P. Marshal / Review of Palaeobotany and Palynology 139 (2006) 1–15 microscopic organic ball or tube (often flattened to single or very few microfossils allows characteriza- when preserved in shales) with or without various tion of the fine ultrastructure and microchemistry of the ornaments, that make comparison with recent clades material studied. In some cases, it is possible to relate difficult. New approaches are necessary to elucidate these with similar known features of recent organisms their paleobiology. and clarify the paleobiology of the fossils. Ideally, this Study of the wall ultrastructure can differentiate approach should be conducted within a good geological between prokaryotic and eukaryotic acid-resistant framework, in well-dated successions, with detailed microfossils and, in some cases, even identify particular sedimentological reconstruction of paleoenvironments. clades (review in Javaux et al., 2003, 2004a). Combin- This paper focus on techniques that can be applied to ing microscopy (light microscopy, scanning and trans- isolated acid-resistant organic-walled microfossils mitted electron microscopy) with microchemical extracted from shales, in order to characterize their analyses of individual microfossils offers further morphology, wall ultrastructure and chemistry and to insights into the paleobiology and evolution of early reconstruct their paleobiology (Table 1). Other techni- microorganisms. A combination of techniques applied ques (briefly mentioned in the text) can be used for visualizing microfossils still embedded in a mineral matrix (and too fragile to withstand extraction) and for Table 1 characterizing their elemental composition and their Summary of techniques that can be applied on single acritarchs distribution in the rock, and the biological–mineral extracted from shales by acid-maceration and possible paleobiological information interactions. Techniques Data Paleobiological information 2. Materials Transmitted Morphology Assemblage diversity light (ornamentation, color, microscopy branching, etc.) Most of the fossils used as examples here come from No. of specimens Characteristic morphology carbonaceous shales of the early Mesoproterozoic Roper No. of species Cell division patterns Group, northern Australia (Fig. 1). The sedimentary Reproduction mode architecture of the Roper Basin is well characterized Wall thickness, flexibility (Abbott and Sweet, 2000). The shales preserve abundant Taphonomy Multicellularity and exquisite organic-walled microfossils distributed in Biological affinities in assemblages showing an onshore–offshore pattern of some cases decreasing abundance, declining diversity and changing Scanning Detailed outer and Wall ornamentation and dominance (Javaux et al., 2001). U–Pb SHRIMP electron inner wall features structure sometimes analyses of zircons from an ash bed in the Mainoru microscope indicative of eukaryotc complexity Formation fix an age of 1492±3 Ma for early Roper Wall thickness deposition (Page et al., 2000). A 1429±31 Ma Rb–Sr Transmission Wall ultrastructure Biological affinities at age for illite in dolomitic siltstones near the top of the electron level of kingdom, succession is consistent with the zircon age, even if less microscopy class in some cases reliable (Kralik, 1982). Highly carbonaceous shales in Fluorescence Fluorescence of Linked to wall chemistry, confocal wall polymers applicable on very basinal deposits of the Velkerri Formation, near the top microscopy immature material of the Roper Group, also contain low abundances of EDEX Elemental Details on steranes sourced by eukaryotic organisms (Summons et composition preservation mode, al., 1988). The Roper microfossils have been variously FT-infrared Biopolymer Biological interpreted as the oldest unambiguous evidence for spectrometry composition affinities in some cases eukaryotes (Javaux et al., 2001, 2003), as complex FT-Raman Aromaticity and To use in prokaryotes (Cavalier-Smith, 2002) and as fungi spectrometry thermal maturity of combination with (Butterfield, 2005). Their exquisite preservation and organic matter FTIR for further their age makes them ideally suited for paleobiological characterization investigations. of wall chemistry Pyrolysis Biomarker Biological affinities One highly ornamented fossil also treated here, GC/MS composition in some cases Shuiyousphaeridium macroreticulatum, comes from SIMS C isotopes Metabolism in some shales of the top of the Ruyang Group, northern China cases, in combination (Yin, 1998). Ruyang deposition is not well constrained with morphology by radiometric dates, but appears to be at least broadly E.J. Javaux, C.P. Marshal / Review of Palaeobotany and Palynology 139 (2006) 1–15 3 2.1. Characterization of acritarch morphology and ultrastructure 2.1.1. Light microscopy Light microscopy is routinely used to examine the morphology of the fossils mounted on glass slides with transmitted light, as well as for determining the diversity of assemblages. In some cases, comparative morphology with extant groups might reveal a division or reproduction pattern or other morpholog- ical feature (for example, tabulation in dinoflagellates) unique to certain biological groups, therefore permit- ting the phylogenetic positioning of the specimens. Butterfield (2000) compared the division patterns of cells in various groups of algae and bacteria and concluded to a bangiophyte affiliation for a population of 1.2–1 Ga (gigayear-old) fossil preserved in cherts of the Hunting Formation, arctic Canada. This careful study identified the earliest eukaryote so far that can be related to an extant lineage. This approach has also been very successful in other cases, identifying cyanobacteria genera ranging from the Proterozoic to now (Knoll and Golubic, 1992). Examination of a large population of well-preserved specimens from a single bedding plane might also permit to unify seemingly unicellular disparate forms into a multicel- Fig. 1. Location and generalized stratigraphy of the Roper Group, northern Australia, showing stratigraphic distribution of facies and lular organism (for example, a diverse Neoproterozoic microfossils. Modified from Javaux et al. (2001). assemblage has been shown to be the disarticulated remains of a single vaucheriacean metaphyte, Butter- field, 2004). coeval with Roper sedimentation.
Recommended publications
  • The Geological Succession of Primary Producers in the Oceans
    CHAPTER 8 The Geological Succession of Primary Producers in the Oceans ANDREW H. KNOLL, ROGER E. SUMMONS, JACOB R. WALDBAUER, AND JOHN E. ZUMBERGE I. Records of Primary Producers in Ancient Oceans A. Microfossils B. Molecular Biomarkers II. The Rise of Modern Phytoplankton A. Fossils and Phylogeny B. Biomarkers and the Rise of Modern Phytoplankton C. Summary of the Rise of Modern Phytoplankton III. Paleozoic Primary Production A. Microfossils B. Paleozoic Molecular Biomarkers C. Paleozoic Summary IV. Proterozoic Primary Production A. Prokaryotic Fossils B. Eukaryotic Fossils C. Proterozoic Molecular Biomarkers D. Summary of the Proterozoic Record V. Archean Oceans VI. Conclusions A. Directions for Continuing Research References In the modern oceans, diatoms, dinoflagel- geobiological prominence only in the Mesozoic lates, and coccolithophorids play prominent Era also requires that other primary producers roles in primary production (Falkowski et al. fueled marine ecosystems for most of Earth 2004). The biological observation that these history. The question, then, is What did pri- groups acquired photosynthesis via endo- mary production in the oceans look like before symbiosis requires that they were preceded in the rise of modern phytoplankton groups? time by other photoautotrophs. The geologi- In this chapter, we explore two records cal observation that the three groups rose to of past primary producers: morphological 133 CCh08-P370518.inddh08-P370518.indd 113333 55/2/2007/2/2007 11:16:46:16:46 PPMM 134 8. THE GEOLOGICAL SUCCESSION OF PRIMARY PRODUCERS IN THE OCEANS fossils and molecular biomarkers. Because without well developed frustules might these two windows on ancient biology are well leave no morphologic record at all in framed by such different patterns of pres- sediments.
    [Show full text]
  • Changes in the Lipid Composition of Antarctic Sea-Ice Diatom Communities During a Spring Bloom
    Antarctic Science 1 (2): 133-140 (1989) Changes in the lipid composition of Antarctic sea-ice diatom communities during a spring bloom: an indication of community physiological status PETER D.NICHOLS', ANNA C. PALMISAN02,4,MARK S. RAYNER', GLEN A. SMITH3and DAVID C. WHITE3 'CSIRo Division of Oceanography, Marine Laboratories, GPO Box 1538, Hobart, Tasmania 7001, Australia 'NASA-Ames Research Center, Moffett Field, CA 94035, USA 'Institute for Applied Microbiology, University of Tennessee, Knoxville, TN 37932-2567, USA Present address: Procter and Gamble, Ivorydale Technical Center, Cincinnati, OH 4521 7,USA Abstract: The lipid composition of natural populations of diatoms in the sea ice at McMurdo Sound was determined during the austral spring bloom of 1985, using an Iatroscan TLC-FID system. The major lipid classes in all samples were polar lipids (including phospholipid, glycolipid and chlorophyll) and triacylglycerol, with lesser proportions of free fatty acids. Total lipid increased through November and early December, reaching a maximum (3300 mg mZat Cape Armitage and 1800 mg m-2at Erebus Ice Tongue) c. one week after the chlorophyll a maxima. This increase was largely attributable to a corresponding increase in triacylglycerol. At the lipid maxima, uiacylglycerol/polar lipid ratios in the range 1.O to 2.5 were observed. The dynamic variations in lipid class abundances indicate that profound changes in the physiology of sea- ice diatoms are occurring throughout the spring bloom. A range of sterols (CX-C3J were detected; 24- methylenecholesterol,brassicasterol and 24-ethylcholesterol were the major sterols at the Cape Armitage and Erebus sites. The similarity of the sterol profiles to those of Antarctic freshwater algal communities strongly indicates diatoms as a more probable source of C, sterols in the freshwater lakes than cyanobacteria or other algal groups.
    [Show full text]
  • Atlas of Modern Dinoflagellate Cyst Distributions in the Black Sea Corridor: from Aegean to Aral Seas, Including Marmara, Black, Azov and Caspian Seas
    1 Marine Micropaleontology Achimer June 2017, Volume 134, Pages 1-152 http://dx.doi.org/10.1016/j.marmicro.2017.05.004 http://archimer.ifremer.fr http://archimer.ifremer.fr/doc/00387/49824/ © 2017 Elsevier B.V. All rights reserved. Atlas of modern dinoflagellate cyst distributions in the Black Sea Corridor: From Aegean to Aral Seas, including Marmara, Black, Azov and Caspian Seas Mudie Peta J. 1, Marret Fabienne 2, *, Mertens Kenneth 3, Shumilovskikh Lyudmila 4, Leroy Suzanne A.G. 2, 5 1 Geological Survey of Canada, Box 1008, Dartmouth, NS B2Y 4A2, Canada 2 School of Environmental Sciences, University of Liverpool, Liverpool, L69 7ZT, UK 3 Research Unit Palaeontology, Ghent University, Krijgslaan 281 S8, 9000 Gent, Belgium 4 Department of Palynology and Climate Dynamics, University of Göttingen, Untere Karspüle 2, 37073 Göttingen, Germany 5 CEREGE, Technopôle de l’Arbois BP 80, 13545, Aix-en-Provence, cedex 4, France * Corresponding author : Fabienne Marret, email address : [email protected] Abstract : We present the first comprehensive taxonomic and environmental study of dinoflagellate cysts in 185 surface sediment samples from the Black Sea Corridor (BSC) which is a series of marine basins extending from the Aegean to the Aral Seas (including Marmara, Black, Azov and Caspian Seas). For decades, these low-salinity, semi-enclosed or endorheic basins have experienced large-scale changes because of intensive agriculture and industrialisation, with consequent eutrophication and increased algal blooms. The BSC atlas data provide a baseline for improved understanding of linkages between surface water conditions and dinoflagellate cyst (dinocyst) distribution, diversity and morphological variations. By cross-reference to dinocyst occurrences in sediment cores with radiocarbon ages covering the past c.
    [Show full text]
  • Major Transitions in Dinoflagellate Evolution Unveiled By
    Major transitions in dinoflagellate evolution unveiled PNAS PLUS by phylotranscriptomics Jan Janouskoveca,b,c,d,1, Gregory S. Gavelise, Fabien Burkic,2, Donna Dinhc, Tsvetan R. Bachvarofff, Sebastian G. Gornikg, Kelley J. Brighth, Behzad Imanianc, Suzanne L. Stromh, Charles F. Delwichei, Ross F. Wallerj, Robert A. Fensomek, Brian S. Leanderc,d,e, Forest L. Rohwerb,d, and Juan F. Saldarriagac aDepartment of Genetics, Evolution and Environment, University College London, London WC1E 6BT, United Kingdom; bBiology Department, San Diego State University, San Diego, CA 92182; cBotany Department, University of British Columbia, Vancouver, BC V6T 1Z4, Canada; dProgram in Integrated Microbial Diversity, Canadian Institute for Advanced Research, Toronto, ON M5G 1Z8, Canada; eZoology Department, University of British Columbia, Vancouver, BC V6T 1Z4, Canada; fInstitute for Marine and Environmental Technology, University of Maryland Center for Environmental Sciences, Baltimore, MD 21202; gCentre for Chromosome Biology, School of Natural Sciences, National University of Ireland, Galway, Ireland; hShannon Point Marine Center, Western Washington University, Anacortes, WA 98221; iDepartment of Cell Biology and Molecular Genetics and Agricultural Experiment Station, University of Maryland, College Park, MD 20742; jDepartment of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom; and kBedford Institute of Oceanography, Geological Survey of Canada (Atlantic), Dartmouth, NS B2Y 4A2, Canada Edited by David M. Hillis, The University of Texas at Austin, Austin, TX, and approved November 28, 2016 (received for review September 8, 2016) Dinoflagellates are key species in marine environments, but they have evolved bioluminescence. They have a nonnucleosomal system remain poorly understood in part because of their large, complex of nuclear DNA packaging, widespread trans-splicing in mRNAs, genomes, unique molecular biology, and unresolved in-group and highly unusual plastid and mitochondrial genomes with com- relationships.
    [Show full text]
  • Life, Molecules and the Geological Record
    An Introduction to Molecular Markers • Key Reading • Killops S. and Killops V. (2005) An introduction to Organic Geochemistry, 2nd Edition. Blackwell Scientific. 393 pp. • Suggested Reading • Volkman J.K., Barrett S.M., Blackburn S.I., Mansour M.P., Sikes E.L. and Gelin F. (1998) Microalgal biomarkers: A review of recent research developments. Org. Geochem. 29, 1163-1179. • Sinninghe Damste et al., 2004. The Rise of the Rhizosolenid Diatoms. Science. 304, 584-587. • Coolen et al., 2004. Combined DNA and lipid analyses of sediments reveal changes in Holocene haptophyte and diatom populations in an Antarctic lake. EPSL, 223,225- 239. • Volkman J.K. 2005. Sterols and other triterpenoids: source specificity and evolution of biosynthetic pathways. Org. Geochem. 36, 139-159. Life, Molecules and the Geological Record • Life leaves molecular residues (Chemical Fossils) as well as e.g. cholesterol visible shapes/objects (Fossils) in the sedimentary record. • These molecular residues, when HO characterised as specific molecules (Biomarkers) by their structures and isotopic content, may give precise indications of their e.g. cholestane biosynthetic origins in particular organisms, as well as the environmental conditions that the organisms experienced. 1 Definition of a biomarker (or “molecular marker” or “geochemical fossil”): “A molecule whose carbon skeleton can unambiguously be linked to that of a known biological precursor compound” More generally: “Organic compounds found in sediments which have properties that can be directly related to a known biological precursor” Biological marker molecules • Living organisms biosynthesize a very small subset of the billions of molecules that can be assembled in theory from C, H, O, N, S, P etc.
    [Show full text]
  • Chemical Reference Materials: Setting the Standards for Ocean Science
    Chemical Reference Materials: Setting the Standards for Ocean Science Committee on Reference Materials for Ocean Science, National Research Council ISBN: 0-309-50083-4, 144 pages, 6 x 9, (2002) This free PDF was downloaded from: http://www.nap.edu/catalog/10476.html Visit the National Academies Press online, the authoritative source for all books from the National Academy of Sciences, the National Academy of Engineering, the Institute of Medicine, and the National Research Council: • Download hundreds of free books in PDF • Read thousands of books online for free • Purchase printed books and PDF files • Explore our innovative research tools – try the Research Dashboard now • Sign up to be notified when new books are published Thank you for downloading this free PDF. If you have comments, questions or want more information about the books published by the National Academies Press, you may contact our customer service department toll-free at 888-624-8373, visit us online, or send an email to [email protected]. This book plus thousands more are available at www.nap.edu. Copyright © National Academy of Sciences. All rights reserved. Unless otherwise indicated, all materials in this PDF file are copyrighted by the National Academy of Sciences. Distribution or copying is strictly prohibited without permission of the National Academies Press <http://www.nap.edu/permissions/>. Permission is granted for this material to be posted on a secure password-protected Web site. The content may not be posted on a public Web site. Chemical Reference Materials: Setting the Standards for Ocean Science http://www.nap.edu/catalog/10476.html CHEMICAL REFERENCE MATERIALS SETTING THE STANDARDS FOR OCEAN SCIENCE Committee on Reference Materials for Ocean Science Ocean Studies Board Division on Earth and Life Studies THE NATIONAL ACADEMIES PRESS Washington, D.C.
    [Show full text]
  • Major Transitions in Dinoflagellate Evolution Unveiled By
    Major transitions in dinoflagellate evolution unveiled PNAS PLUS by phylotranscriptomics Jan Janouskoveca,b,c,d,1, Gregory S. Gavelise, Fabien Burkic,2, Donna Dinhc, Tsvetan R. Bachvarofff, Sebastian G. Gornikg, Kelley J. Brighth, Behzad Imanianc, Suzanne L. Stromh, Charles F. Delwichei, Ross F. Wallerj, Robert A. Fensomek, Brian S. Leanderc,d,e, Forest L. Rohwerb,d, and Juan F. Saldarriagac aDepartment of Genetics, Evolution and Environment, University College London, London WC1E 6BT, United Kingdom; bBiology Department, San Diego State University, San Diego, CA 92182; cBotany Department, University of British Columbia, Vancouver, BC V6T 1Z4, Canada; dProgram in Integrated Microbial Diversity, Canadian Institute for Advanced Research, Toronto, ON M5G 1Z8, Canada; eZoology Department, University of British Columbia, Vancouver, BC V6T 1Z4, Canada; fInstitute for Marine and Environmental Technology, University of Maryland Center for Environmental Sciences, Baltimore, MD 21202; gCentre for Chromosome Biology, School of Natural Sciences, National University of Ireland, Galway, Ireland; hShannon Point Marine Center, Western Washington University, Anacortes, WA 98221; iDepartment of Cell Biology and Molecular Genetics and Agricultural Experiment Station, University of Maryland, College Park, MD 20742; jDepartment of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom; and kBedford Institute of Oceanography, Geological Survey of Canada (Atlantic), Dartmouth, NS B2Y 4A2, Canada Edited by David M. Hillis, The University of Texas at Austin, Austin, TX, and approved November 28, 2016 (received for review September 8, 2016) Dinoflagellates are key species in marine environments, but they have evolved bioluminescence. They have a nonnucleosomal system remain poorly understood in part because of their large, complex of nuclear DNA packaging, widespread trans-splicing in mRNAs, genomes, unique molecular biology, and unresolved in-group and highly unusual plastid and mitochondrial genomes with com- relationships.
    [Show full text]
  • Dinoflagellate Fossils: Geological and Biological Applications
    1 Revue de Micropaléontologie Archimer December 2018, Volume 61, Issue 3-4, Pages 235-254 https://doi.org/10.1016/j.revmic.2018.09.003 https://archimer.ifremer.fr https://archimer.ifremer.fr/doc/00463/57476/ Dinoflagellate fossils: Geological and biological applications Penaud Aurélie 1, * , Hardy William 1, Lambert Clément 1, Marret Fabienne 2, Masure Edwige 3, Servais Thomas 4, Siano Raffaele 5, Wary Mélanie 6, 7, Mertens Kenneth 8 1 UMR 6538 Géosciences Océan, IUEM, Université Brest, CNRS, 29280 Plouzané, France 2 Department of Geography and Planning, School of Environmental Sciences, University of Liverpool, L69 7ZT Liverpool, UK 3 Centre de Recherche sur la Paléobiodiversité et les Paléoenvironnements, CR2P, UMR 7207, MNHN, CNRS, Sorbonne université, 4, place Jussieu, 75005 Paris, France 4 CNRS UMR 8198 Evo-Eco-Paleo, Université Lille, 59000 Lille, France 5 Ifremer, Centre de Brest, DYNECO PELAGOS, 29280 Plouzané, France 6 UMR 5805 EPOC (Environnements et Paléoenvironnements Océaniques et Continentaux), Université Bordeaux, CNRS, EPHE, 33615 Pessac, France 7 Institute of Environmental Science and Technology (ICTA), Universitat Autònoma de Barcelona, 08193 Bellaterra, Catalonia, Spain 8 Ifremer, LER BO, Station de Biologie Marine, place de la Croix, BP 40537, 29185 Concarneau cedex, France * Corresponding author : Aurélie Penaud, email address : [email protected] Abstract : Dinoflagellates are part of the marine plankton and about 200 species produce a cyst (dinocyst) during their life cycle, these organic-walled sexually-produced cysts being fossilizable in sediments for hundreds of millions of years. Over the past 40–50 years, dinocysts have led to major advances on Mesozoic-Cenozoic research, in terms of biostratigraphy and paleogeogeography.
    [Show full text]
  • Exploring Preserved Fossil Dinoflagellate And
    PALEOCEANOGRAPHY, VOL. 26, PA2204, doi:10.1029/2010PA001948, 2011 Exploring preserved fossil dinoflagellate and haptophyte DNA signatures to infer ecological and environmental changes during deposition of sapropel S1 in the eastern Mediterranean Arjan C. Boere,1 W. Irene C. Rijpstra,1 Gert J. de Lange,2 Elisa Malinverno,3 Jaap S. Sinninghe Damsté,1,2 and Marco J. L. Coolen1,4 Received 16 February 2010; revised 7 January 2011; accepted 25 January 2011; published 16 April 2011. [1] In this study we used a comparative multiproxy survey (fossil DNA, calcareous nannofossils, and lipid biomarkers) to test whether preserved genetic signatures provide an accurate view of haptophyte and dinoflagellate populations during deposition of the eastern Mediterranean sapropel S1 and the organic carbon‐depleted oxidized marls flanking the S1 and to see if we could identify important environmental indicator species that did not fossilize and escaped previous microscopic identification. The marls above and below the S1 contained low concentrations of lipid biomarkers diagnostic for dinoflagellates and haptophytes (i.e., dinosterol and long‐chain alkenones), but 500 base pair long ribosomal DNA fragments of these protists were below the detection limit. In contrast, dinoflagellate and haptophyte DNA could be recovered from the organic carbon‐rich S1, but the most abundant sequences did not represent species that were part of the nannofossil (this study) or previously described dinocyst composition. The oldest section of S1 (9.8 to ∼8 14C kyr B.P.) revealed a predominance of dinoflagellate phylotypes, which were previously only detected in anoxic Black Sea sediments. In the same section of the core, the most abundant haptophyte sequence showed highest similarity with uncultivated haptophytes that were previously shown to grow mixotrophically as predators of picocyanobacteria, an adaptation that promotes growth in oligotrophic marine waters.
    [Show full text]
  • Palaeoecological Analysis of Phytoplankton Regime Shifts in Response to Coastal Eutrophication
    Vol. 475: 1–14, 2013 MARINE ECOLOGY PROGRESS SERIES Published February 14 doi: 10.3354/meps10234 Mar Ecol Prog Ser OPENPEN ACCESSCCESS FEATURE ARTICLE Palaeoecological analysis of phytoplankton regime shifts in response to coastal eutrophication Dongyan Liu1,*, Xuhong Shen1,2, Baoping Di1, Yajun Shi1, John K. Keesing1,3, Yujue Wang1, Yueqi Wang1,2 1Key Laboratory of Coastal Zone Environmental Processes, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences; Shandong Provincial Key Laboratory of Coastal Zone Environmental Processes, 264003, Yantai, Shandong, PR China 2Graduate University of the Chinese Academy of Sciences, 100049, Beijing, PR China 3CSIRO Wealth from Oceans National Research Flagship, Marine and Atmospheric Research, Private Bag 5, Wembley, Western Australia 6913, Australia ABSTRACT: We used a multiple-proxy palaeoeco - logical method to reconstruct a 100 yr time series showing coastal eutrophic processes and phyto- plankton re sponses. Total organic carbon, total nitrogen, diatom frustules, dinoflagellate cysts, brassicasterol and dinosterol were extracted from chronologic sediment cores in Sishili Bay, a pol- luted area in China. The cores showed that eutrophication occurred during about 1975 to 1985, which corresponds to increased human activity associated with China’s economic develop- ment since 1978. During eutrophication, the bio- mass of diatoms and dinoflagellates increased, and dominant species shifted abruptly. The small, heavily silicified diatoms Cyclotella stylorum and Paleoecological methods make it possible to reconstruct Paralia sulcata gradually took the place of the anthropogenic effects such as coastal eutrophication over large dominant diatom Coscinodiscus radiatus, periods of a century. while dinoflagellates displayed a progressive in - Photos: Dongyan Liu & Zhijun Dong crease since 1975.
    [Show full text]
  • Prorocentrum Micans
    Reconstruction of microbial and environmental conditions in an Australian hypersaline ecosystem from the mid-Pleistocene through the present by Claudia Meredith Jones A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Earth and Planetary Sciences in the Graduate Division of the University of California, Berkeley Committee in charge: Professor Jillian F. Banfield, Chair Professor James Bishop Professor Jochen Brocks Professor Robert C. Rhew Fall 2011 Reconstruction of microbial and environmental conditions in an Australian hypersaline ecosystem from the mid-Pleistocene through the present 2011 by Claudia Meredith Jones Abstract Reconstruction of microbial and environmental conditions in an Australian hypersaline ecosystem from the mid-Pleistocene through the present by Claudia Meredith Jones Doctor of Philosophy in Earth and Planetary Sciences University of California, Berkeley Professor Jillian F. Banfield, Chair Global-scale climate change is an extensively studied topic: researchers monitor climatic indicators from sea surface temperature to atmospheric CO2 concentrations. However, historical records do not exist on timescales sufficiently extensive to permit projection of future events. To remedy this situation, researchers utilize data collected from sediments and rock formations deposited in pre-historical times in order to refine the predictive capabilities of current climate models. One can see from the relatively small number of datasets comprising samples from both the northern and southern hemispheres that climate change through time has not been uniform across the globe. Complicating the interpretation of this variability is the dearth of data sets from the southern hemisphere. Many of the data sets generated from samples collected in the southern hemisphere are derived from strata deposited in marine environments.
    [Show full text]
  • This Is the Author's Version of a Work That Was Accepted for Publication In
    NOTICE: this is the author’s version of a work that was accepted for publication in Applied Geochemistry. Changes resulting from the publishing process, such as peer review, editing, corrections, structural formatting, and other quality control mechanisms may not be reflected in this document. Changes may have been made to this work since it was submitted for publication. A definitive version was subsequently published in Applied Geochemistry, 26, 9-10, 2011. DOI 10.1016/j.apgeochem.2011.04.026 Applied Geochemistry The significance of 24-norcholestanes, 4-methylsteranes and dinosteranes in oils and source-rocks from East Sirte Basin (Libya) S. Aboglila1*, K. Grice1*, K. Trinajstic1, C. Snape2 and K.H. Williford1 1 WA Organic and Isotope Geochemistry Centre, Department of Chemistry, Curtin University, GPO Box U1987, Perth WA 6845, Australia 2 Energy Technologies Research Institute, University of Nottingham, School of Chemical and Environmental Engineering, University Park, Nottingham NG7 2RD, UK. *Corresponding Authors. Fax: +61 8 9266 2300. E-mail address: [email protected]; [email protected]; [email protected] 1 Abstract The present paper involves a detailed evaluation of specific steroid biomarkers by gas chromatography- mass spectrometry (GC-MS) and GC- metastable reaction monitoring (MRM) analyses of several crude oils and source rocks from the East Sirte Basin. 24-nor -methyl-24- ethylcholestanes and triaromatic steroidscholestanes, have been dinosteranes, identified in 4α both source- rocks and crude oils of the East Sirte Basin. Diatoms, dinoflagellates, (including those potentially associated with corals) and/or their direct ancestors are amongst the proposed sources of these biomarkers.
    [Show full text]