Substrate Specificity and Reaction Mechanism of Vertebrate Carotenoid Cleavage
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ABA Crosstalk with Ethylene and Nitric Oxide in Seed Dormancy and Germination Erwann Arc, Julien Sechet, Françoise Corbineau, Loïc Rajjou, Annie Marion-Poll
ABA crosstalk with ethylene and nitric oxide in seed dormancy and germination Erwann Arc, Julien Sechet, Françoise Corbineau, Loïc Rajjou, Annie Marion-Poll To cite this version: Erwann Arc, Julien Sechet, Françoise Corbineau, Loïc Rajjou, Annie Marion-Poll. ABA crosstalk with ethylene and nitric oxide in seed dormancy and germination. Frontiers in Plant Science, Frontiers, 2013, 4 (63), pp.1-19. 10.3389/fpls.2013.00063. hal-01204075 HAL Id: hal-01204075 https://hal.archives-ouvertes.fr/hal-01204075 Submitted on 29 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. REVIEW ARTICLE published: 26 March 2013 doi: 10.3389/fpls.2013.00063 ABA crosstalk with ethylene and nitric oxide in seed dormancy and germination Erwann Arc1,2, Julien Sechet1, Françoise Corbineau3, Loïc Rajjou1,2 and Annie Marion-Poll1* 1 Institut Jean-Pierre Bourgin (UMR1318 INRA – AgroParisTech), Institut National de la Recherche Agronomique, Saclay Plant Science, Versailles, France 2 UFR de Physiologie végétale, AgroParisTech, Paris, France 3 Germination et Dormance des Semences, UR5 UPMC-EAC 7180 CNRS, Université Pierre et Marie Curie-Paris 6, Paris, France Edited by: Dormancy is an adaptive trait that enables seed germination to coincide with favorable Sergi Munné-Bosch, University of environmental conditions. -
Dominant Retinas: a Novel Pathway for Visual- Pigment Regeneration in Daylight
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Neuron, Vol. 36, 69–80, September 26, 2002, Copyright 2002 by Cell Press Isomerization and Oxidation of Vitamin A in Cone- Dominant Retinas: A Novel Pathway for Visual- Pigment Regeneration in Daylight Nathan L. Mata,1 Roxana A. Radu,1 cis-retinaldehyde through a multistep pathway called Richard S. Clemmons,3 and Gabriel H. Travis1,2,4 the visual cycle (Figure 1B). Most of what is known about 1Jules Stein Eye Institute the visual cycle has come from the study of rod-domi- 2 Department of Biological Chemistry nant species such as cattle and rodents. UCLA School of Medicine Several lines of evidence suggest that rod and cone Los Angeles, California 90095 photopigments regenerate by different mechanisms. In 3 Center for Basic Neuroscience frog retinas separated from the retinal pigment epithe- UT Southwestern Medical Center lium (RPE), cone opsin, but not rhodopsin, regenerates Dallas, Texas 75235 spontaneously (Goldstein and Wolf, 1973; Hood and Hock, 1973). After bleaching, isolated salamander cones, but not rods, recover sensitivity with addition of Summary 11-cis-retinol (Jones et al., 1989). Cultured Mu¨ ller cells isomerize all-trans-retinol to 11-cis-retinol, which they The first step toward light perception is 11-cis to all- secrete into the medium (Das et al., 1992). Mu¨ ller cells, trans photoisomerization of the retinaldehyde chro- in addition to RPE cells, contain cellular retinaldehyde mophore in a rod or cone opsin-pigment molecule. binding protein (CRALBP), which specifically binds 11- Light sensitivity of the opsin pigment is restored cis-retinoids (Bunt-Milam and Saari, 1983; Saari and through a multistep pathway called the visual cycle, Bredberg, 1987). -
Retinoid Isomerase Inhibitors Impair but Do Not Block Mammalian Cone Photoreceptor Function
Published Online: 2 March, 2018 | Supp Info: http://doi.org/10.1085/jgp.201711815 Downloaded from jgp.rupress.org on April 2, 2018 RESEARCH ARTICLE Retinoid isomerase inhibitors impair but do not block mammalian cone photoreceptor function Philip D. Kiser1,2, Jianye Zhang2, Aditya Sharma3, Juan M. Angueyra4, Alexander V. Kolesnikov3, Mohsen Badiee5, Gregory P. Tochtrop5, Junzo Kinoshita6, Neal S. Peachey1,6,7, Wei Li4, Vladimir J. Kefalov3, and Krzysztof Palczewski2 Visual function in vertebrates critically depends on the continuous regeneration of visual pigments in rod and cone photoreceptors. RPE65 is a well-established retinoid isomerase in the pigment epithelium that regenerates rhodopsin during the rod visual cycle; however, its contribution to the regeneration of cone pigments remains obscure. In this study, we use potent and selective RPE65 inhibitors in rod- and cone-dominant animal models to discern the role of this enzyme in cone-mediated vision. We confirm that retinylamine and emixustat-family compounds selectively inhibit RPE65 over DES1, the putative retinoid isomerase of the intraretinal visual cycle. In vivo and ex vivo electroretinography experiments in Gnat1−/− mice demonstrate that acute administration of RPE65 inhibitors after a bleach suppresses the late, slow phase of cone dark adaptation without affecting the initial rapid portion, which reflects intraretinal visual cycle function. Acute administration of these compounds does not affect the light sensitivity of cone photoreceptors in mice during extended exposure to background light, but does slow all phases of subsequent dark recovery. We also show that cone function is only partially suppressed in cone-dominant ground squirrels and wild-type mice by multiday administration of an RPE65 inhibitor despite profound blockade of RPE65 activity. -
Diverse Biosynthetic Pathways and Protective Functions Against Environmental Stress of Antioxidants in Microalgae
plants Review Diverse Biosynthetic Pathways and Protective Functions against Environmental Stress of Antioxidants in Microalgae Shun Tamaki 1,* , Keiichi Mochida 1,2,3,4 and Kengo Suzuki 1,5 1 Microalgae Production Control Technology Laboratory, RIKEN Baton Zone Program, Yokohama 230-0045, Japan; [email protected] (K.M.); [email protected] (K.S.) 2 RIKEN Center for Sustainable Resource Science, Yokohama 230-0045, Japan 3 Kihara Institute for Biological Research, Yokohama City University, Yokohama 230-0045, Japan 4 School of Information and Data Sciences, Nagasaki University, Nagasaki 852-8521, Japan 5 euglena Co., Ltd., Tokyo 108-0014, Japan * Correspondence: [email protected]; Tel.: +81-45-503-9576 Abstract: Eukaryotic microalgae have been classified into several biological divisions and have evo- lutionarily acquired diverse morphologies, metabolisms, and life cycles. They are naturally exposed to environmental stresses that cause oxidative damage due to reactive oxygen species accumulation. To cope with environmental stresses, microalgae contain various antioxidants, including carotenoids, ascorbate (AsA), and glutathione (GSH). Carotenoids are hydrophobic pigments required for light harvesting, photoprotection, and phototaxis. AsA constitutes the AsA-GSH cycle together with GSH and is responsible for photooxidative stress defense. GSH contributes not only to ROS scavenging, but also to heavy metal detoxification and thiol-based redox regulation. The evolutionary diversity of microalgae influences the composition and biosynthetic pathways of these antioxidants. For example, α-carotene and its derivatives are specific to Chlorophyta, whereas diadinoxanthin and fucoxanthin are found in Heterokontophyta, Haptophyta, and Dinophyta. It has been suggested that Citation: Tamaki, S.; Mochida, K.; Suzuki, K. Diverse Biosynthetic AsA is biosynthesized via the plant pathway in Chlorophyta and Rhodophyta and via the Euglena Pathways and Protective Functions pathway in Euglenophyta, Heterokontophyta, and Haptophyta. -
Altered Xanthophyll Compositions Adversely Affect Chlorophyll Accumulation and Nonphotochemical Quenching in Arabidopsis Mutants
Proc. Natl. Acad. Sci. USA Vol. 95, pp. 13324–13329, October 1998 Plant Biology Altered xanthophyll compositions adversely affect chlorophyll accumulation and nonphotochemical quenching in Arabidopsis mutants BARRY J. POGSON*, KRISHNA K. NIYOGI†,OLLE BJO¨RKMAN‡, AND DEAN DELLAPENNA§¶ *Department of Plant Biology, Arizona State University, Tempe, AZ 85287-1601; †Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720-3102; ‡Department of Plant Biology, Carnegie Institution of Washington, Stanford, CA 94305-4101; and §Department of Biochemistry, University of Nevada, Reno, NV 89557-0014 Contributed by Olle Bjo¨rkman, September 4, 1998 ABSTRACT Collectively, the xanthophyll class of carote- thin, are enriched in the LHCs, where they contribute to noids perform a variety of critical roles in light harvesting assembly, light harvesting, and photoprotection (2–8). antenna assembly and function. The xanthophyll composition A summary of the carotenoid biosynthetic pathway of higher of higher plant photosystems (lutein, violaxanthin, and neox- plants and relevant chemical structures is shown in Fig. 1. anthin) is remarkably conserved, suggesting important func- Lycopene is cyclized twice by the enzyme lycopene b-cyclase tional roles for each. We have taken a molecular genetic to form b-carotene. The two beta rings of b-carotene are approach in Arabidopsis toward defining the respective roles of subjected to identical hydroxylation reactions to yield zeaxan- individual xanthophylls in vivo by using a series of mutant thin, which in turn is epoxidated once to form antheraxanthin lines that selectively eliminate and substitute a range of and twice to form violaxanthin. Neoxanthin is derived from xanthophylls. The mutations, lut1 and lut2 (lut 5 lutein violaxanthin by an additional rearrangement (9). -
Phytochemical Functional Foods Related Titles from Woodhead’S Food Science, Technology and Nutrition List
Phytochemical functional foods Related titles from Woodhead’s food science, technology and nutrition list: Performance functional foods (ISBN 1 85573 671 3) Some of the newest and most exciting developments in functional foods are products that claim to influence mood and enhance both mental and physical performance. This important collection reviews the range of ingredients used in these ‘performance’ functional foods, their effects and the evidence supporting their functional benefits. Antioxidants in food (ISBN 1 85573 463 X) Antioxidants are an increasingly important ingredient in food processing, as they inhibit the development of oxidative rancidity in fat-based foods, particularly meat and dairy products and fried foods. Recent research suggests that they play a role in limiting cardiovascular disease and cancers. This book provides a review of the functional role of antioxidants and discusses how they can be effectively exploited by the food industry, focusing on naturally occurring antioxidants in response to the increasing consumer scepticism over synthetic ingredients. ‘An excellent reference book to have on the shelves’ LWT Food Science and Technology Natural antimicrobials for the minimal processing of foods (ISBN 1 85573 669 1) Consumers demand food products with fewer synthetic additives but increased safety and shelf-life. These demands have increased the importance of natural antimicrobials which prevent the growth of pathogenic and spoilage micro-organisms. Edited by a leading expert in the field, this important collection reviews the range of key antimicrobials such as nisin and chitosan, applications in such areas as postharvest storage of fruits and vegetables, and ways of combining antimicrobials with other preservation techniques to enhance the safety and quality of foods. -
Florigen Family Chromatin Recruitment, Competition and Target Genes
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.04.934026; this version posted February 4, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Florigen family chromatin recruitment, competition and target genes 2 Yang Zhu1, Samantha Klasfeld1, Cheol Woong Jeong1,3†, Run Jin1, Koji Goto4, 3 Nobutoshi Yamaguchi1,2† and Doris Wagner1* 4 1 Department of Biology, University of Pennsylvania, 415 S. University Ave, 5 Philadelphia, PA 19104, USA 6 2 Current address: Science and Technology, Nara Institute of Science and Technology, 7 8916-5 Takayama-cho, Ikoma-shi, Nara 630-0192, Japan 8 3 Current address: LG Economic Research Institute, LG Twin tower, Seoul 07336, 9 Korea 10 4 Research Institute for Biological Sciences, Okayama Prefecture, 7549-1, Kibichuoh- 11 cho, Kaga-gun, Okayama, 716-1241, Japan 12 *Correspondence: [email protected] 13 † equal contribution 14 15 16 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.02.04.934026; this version posted February 4, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 17 Abstract 18 Plants monitor seasonal cues, such as day-length, to optimize life history traits including 19 onset of reproduction and inflorescence architecture 1-3. -
Carotenoid Composition of Strawberry Tree (Arbutus Unedo L.) Fruits
Accepted Manuscript Carotenoid composition of strawberry tree (Arbutus unedo L.) fruits Raúl Delgado-Pelayo, Lourdes Gallardo-Guerrero, Dámaso Hornero-Méndez PII: S0308-8146(15)30273-9 DOI: http://dx.doi.org/10.1016/j.foodchem.2015.11.135 Reference: FOCH 18476 To appear in: Food Chemistry Received Date: 25 May 2015 Revised Date: 21 November 2015 Accepted Date: 28 November 2015 Please cite this article as: Delgado-Pelayo, R., Gallardo-Guerrero, L., Hornero-Méndez, D., Carotenoid composition of strawberry tree (Arbutus unedo L.) fruits, Food Chemistry (2015), doi: http://dx.doi.org/10.1016/j.foodchem. 2015.11.135 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. Carotenoid composition of strawberry tree (Arbutus unedo L.) fruits. Raúl Delgado-Pelayo, Lourdes Gallardo-Guerrero, Dámaso Hornero-Méndez* Group of Chemistry and Biochemistry of Pigments. Food Phytochemistry Department. Instituto de la Grasa (CSIC). Campus Universidad Pablo de Olavide, Ctra. de Utrera km. 1. 41013 - Sevilla (Spain). * Corresponding author. Telephone: +34 954611550; Fax: +34 954616790; e-mail: [email protected] 1 Abstract The carotenoid composition of strawberry tree (A. unedo) fruits has been characterised in detail and quantified for the first time. According to the total carotenoid content (over 340 µg/g dw), mature strawberry tree berries can be classified as fruits with very high carotenoid content (> 20 µg/g dw). -
Relating Metatranscriptomic Profiles to the Micropollutant
1 Relating Metatranscriptomic Profiles to the 2 Micropollutant Biotransformation Potential of 3 Complex Microbial Communities 4 5 Supporting Information 6 7 Stefan Achermann,1,2 Cresten B. Mansfeldt,1 Marcel Müller,1,3 David R. Johnson,1 Kathrin 8 Fenner*,1,2,4 9 1Eawag, Swiss Federal Institute of Aquatic Science and Technology, 8600 Dübendorf, 10 Switzerland. 2Institute of Biogeochemistry and Pollutant Dynamics, ETH Zürich, 8092 11 Zürich, Switzerland. 3Institute of Atmospheric and Climate Science, ETH Zürich, 8092 12 Zürich, Switzerland. 4Department of Chemistry, University of Zürich, 8057 Zürich, 13 Switzerland. 14 *Corresponding author (email: [email protected] ) 15 S.A and C.B.M contributed equally to this work. 16 17 18 19 20 21 This supporting information (SI) is organized in 4 sections (S1-S4) with a total of 10 pages and 22 comprises 7 figures (Figure S1-S7) and 4 tables (Table S1-S4). 23 24 25 S1 26 S1 Data normalization 27 28 29 30 Figure S1. Relative fractions of gene transcripts originating from eukaryotes and bacteria. 31 32 33 Table S1. Relative standard deviation (RSD) for commonly used reference genes across all 34 samples (n=12). EC number mean fraction bacteria (%) RSD (%) RSD bacteria (%) RSD eukaryotes (%) 2.7.7.6 (RNAP) 80 16 6 nda 5.99.1.2 (DNA topoisomerase) 90 11 9 nda 5.99.1.3 (DNA gyrase) 92 16 10 nda 1.2.1.12 (GAPDH) 37 39 6 32 35 and indicates not determined. 36 37 38 39 S2 40 S2 Nitrile hydration 41 42 43 44 Figure S2: Pearson correlation coefficients r for rate constants of bromoxynil and acetamiprid with 45 gene transcripts of ECs describing nucleophilic reactions of water with nitriles. -
A Genetic Framework for Regulation and Seasonal Adaptation of Shoot Architecture in Hybrid Aspen
A genetic framework for regulation and seasonal adaptation of shoot architecture in hybrid aspen Jay P. Mauryaa,b, Pal C. Miskolczia, Sanatkumar Mishraa, Rajesh Kumar Singha, and Rishikesh P. Bhaleraoa,1 aUmeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, SE-901 87 Umeå, Sweden; and bDepartment of Botany, Institute of Science, Banaras Hindu University, Varanasi 221005, Uttar Pradesh, India Edited by Ronald R. Sederoff, North Carolina State University, Raleigh, NC, and approved April 14, 2020 (received for review March 14, 2020) Shoot architecture is critical for optimizing plant adaptation and time–related transcription factor RAV1 has been validated in productivity. In contrast with annuals, branching in perennials branching in trees (17–19). However, information on branching native to temperate and boreal regions must be coordinated with control in perennials is fragmented, and there is a significant gap seasonal growth cycles. How branching is coordinated with in our knowledge of how branching is controlled and integrated seasonal growth is poorly understood. We identified key compo- with seasonal growth cycles in perennial trees (20). Therefore, nents of the genetic network that controls branching and its using functional genetic approaches, we elucidated the genetic regulation by seasonal cues in the model tree hybrid aspen. network that mediates control of branching and its regulation by Our results demonstrate that branching and its control by sea- seasonal cues in the model tree hybrid aspen. These studies re- sonal cues is mediated by mutually antagonistic action of aspen veal the key role played by the mutually antagonistic action of orthologs of the flowering regulators TERMINAL FLOWER 1 LAP1 and TFL1 in mediating control of branching and its re- (TFL1)andAPETALA1 (LIKE APETALA 1/LAP1). -
Key Enzymes of the Retinoid (Visual) Cycle in Vertebrate Retina☆
Biochimica et Biophysica Acta 1821 (2012) 137–151 Contents lists available at ScienceDirect Biochimica et Biophysica Acta journal homepage: www.elsevier.com/locate/bbalip Review Key enzymes of the retinoid (visual) cycle in vertebrate retina☆ Philip D. Kiser a,1, Marcin Golczak a,1, Akiko Maeda a,b,⁎, Krzysztof Palczewski a,⁎⁎ a Department of Pharmacology, Case Western Reserve University, Cleveland, OH, 44106-4965, USA b Department of Ophthalmology and Vision Sciences, Case Western Reserve University, Cleveland, OH, 44106-4965, USA article info abstract Article history: A major goal in vision research over the past few decades has been to understand the molecular details of Received 19 January 2011 retinoid processing within the retinoid (visual) cycle. This includes the consequences of side reactions that Received in revised form 8 March 2011 result from delayed all-trans-retinal clearance and condensation with phospholipids that characterize a Accepted 22 March 2011 variety of serious retinal diseases. Knowledge of the basic retinoid biochemistry involved in these diseases is Available online 5 April 2011 essential for development of effective therapeutics. Photoisomerization of the 11-cis-retinal chromophore of rhodopsin triggers a complex set of metabolic transformations collectively termed phototransduction that Keywords: RPE65 ultimately lead to light perception. Continuity of vision depends on continuous conversion of all-trans-retinal Retinol dehydrogenase back to the 11-cis-retinal isomer. This process takes place in a series of reactions known as the retinoid cycle, Visual cycle which occur in photoreceptor and RPE cells. All-trans-retinal, the initial substrate of this cycle, is a chemically Retinoid cycle reactive aldehyde that can form toxic conjugates with proteins and lipids. -
Pigment Palette by Dr
Tree Leaf Color Series WSFNR08-34 Sept. 2008 Pigment Palette by Dr. Kim D. Coder, Warnell School of Forestry & Natural Resources, University of Georgia Autumn tree colors grace our landscapes. The palette of potential colors is as diverse as the natural world. The climate-induced senescence process that trees use to pass into their Winter rest period can present many colors to the eye. The colored pigments produced by trees can be generally divided into the green drapes of tree life, bright oil paints, subtle water colors, and sullen earth tones. Unveiling Overpowering greens of summer foliage come from chlorophyll pigments. Green colors can hide and dilute other colors. As chlorophyll contents decline in fall, other pigments are revealed or produced in tree leaves. As different pigments are fading, being produced, or changing inside leaves, a host of dynamic color changes result. Taken altogether, the various coloring agents can yield an almost infinite combination of leaf colors. The primary colorants of fall tree leaves are carotenoid and flavonoid pigments mixed over a variable brown background. There are many tree colors. The bright, long lasting oil paints-like colors are carotene pigments produc- ing intense red, orange, and yellow. A chemical associate of the carotenes are xanthophylls which produce yellow and tan colors. The short-lived, highly variable watercolor-like colors are anthocyanin pigments produc- ing soft red, pink, purple and blue. Tannins are common water soluble colorants that produce medium and dark browns. The base color of tree leaf components are light brown. In some tree leaves there are pale cream colors and blueing agents which impact color expression.