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The Earliest Diverging Extant Scleractinian Corals Recovered by Mitochondrial Genomes Isabela G
www.nature.com/scientificreports OPEN The earliest diverging extant scleractinian corals recovered by mitochondrial genomes Isabela G. L. Seiblitz1,2*, Kátia C. C. Capel2, Jarosław Stolarski3, Zheng Bin Randolph Quek4, Danwei Huang4,5 & Marcelo V. Kitahara1,2 Evolutionary reconstructions of scleractinian corals have a discrepant proportion of zooxanthellate reef-building species in relation to their azooxanthellate deep-sea counterparts. In particular, the earliest diverging “Basal” lineage remains poorly studied compared to “Robust” and “Complex” corals. The lack of data from corals other than reef-building species impairs a broader understanding of scleractinian evolution. Here, based on complete mitogenomes, the early onset of azooxanthellate corals is explored focusing on one of the most morphologically distinct families, Micrabaciidae. Sequenced on both Illumina and Sanger platforms, mitogenomes of four micrabaciids range from 19,048 to 19,542 bp and have gene content and order similar to the majority of scleractinians. Phylogenies containing all mitochondrial genes confrm the monophyly of Micrabaciidae as a sister group to the rest of Scleractinia. This topology not only corroborates the hypothesis of a solitary and azooxanthellate ancestor for the order, but also agrees with the unique skeletal microstructure previously found in the family. Moreover, the early-diverging position of micrabaciids followed by gardineriids reinforces the previously observed macromorphological similarities between micrabaciids and Corallimorpharia as -
CNIDARIA Corals, Medusae, Hydroids, Myxozoans
FOUR Phylum CNIDARIA corals, medusae, hydroids, myxozoans STEPHEN D. CAIRNS, LISA-ANN GERSHWIN, FRED J. BROOK, PHILIP PUGH, ELLIOT W. Dawson, OscaR OcaÑA V., WILLEM VERvooRT, GARY WILLIAMS, JEANETTE E. Watson, DENNIS M. OPREsko, PETER SCHUCHERT, P. MICHAEL HINE, DENNIS P. GORDON, HAMISH J. CAMPBELL, ANTHONY J. WRIGHT, JUAN A. SÁNCHEZ, DAPHNE G. FAUTIN his ancient phylum of mostly marine organisms is best known for its contribution to geomorphological features, forming thousands of square Tkilometres of coral reefs in warm tropical waters. Their fossil remains contribute to some limestones. Cnidarians are also significant components of the plankton, where large medusae – popularly called jellyfish – and colonial forms like Portuguese man-of-war and stringy siphonophores prey on other organisms including small fish. Some of these species are justly feared by humans for their stings, which in some cases can be fatal. Certainly, most New Zealanders will have encountered cnidarians when rambling along beaches and fossicking in rock pools where sea anemones and diminutive bushy hydroids abound. In New Zealand’s fiords and in deeper water on seamounts, black corals and branching gorgonians can form veritable trees five metres high or more. In contrast, inland inhabitants of continental landmasses who have never, or rarely, seen an ocean or visited a seashore can hardly be impressed with the Cnidaria as a phylum – freshwater cnidarians are relatively few, restricted to tiny hydras, the branching hydroid Cordylophora, and rare medusae. Worldwide, there are about 10,000 described species, with perhaps half as many again undescribed. All cnidarians have nettle cells known as nematocysts (or cnidae – from the Greek, knide, a nettle), extraordinarily complex structures that are effectively invaginated coiled tubes within a cell. -
The State of Knowledge of Deep-Sea Corals in the New Zealand Region Di Tracey1 and Freya Hjorvarsdottir2 (Eds, Comps) © 2019
The state of knowledge of deep-sea corals in the New Zealand region Di Tracey1 and Freya Hjorvarsdottir2 (eds, comps) © 2019. All rights reserved. The copyright for this report, and for the data, maps, figures and other information (hereafter collectively referred to as “data”) contained in it, is held by NIWA is held by NIWA unless otherwise stated. This copyright extends to all forms of copying and any storage of material in any kind of information retrieval system. While NIWA uses all reasonable endeavours to ensure the accuracy of the data, NIWA does not guarantee or make any representation or warranty (express or implied) regarding the accuracy or completeness of the data, the use to which the data may be put or the results to be obtained from the use of the data. Accordingly, NIWA expressly disclaims all legal liability whatsoever arising from, or connected to, the use of, reference to, reliance on or possession of the data or the existence of errors therein. NIWA recommends that users exercise their own skill and care with respect to their use of the data and that they obtain independent professional advice relevant to their particular circumstances. NIWA SCIENCE AND TECHNOLOGY SERIES NUMBER 84 ISSN 1173-0382 Citation for full report: Tracey, D.M. & Hjorvarsdottir, F. (eds, comps) (2019). The State of Knowledge of Deep-Sea Corals in the New Zealand Region. NIWA Science and Technology Series Number 84. 140 p. Recommended citation for individual chapters (e.g., for Chapter 9.: Freeman, D., & Cryer, M. (2019). Current Management Measures and Threats, Chapter 9 In: Tracey, D.M. -
The Cnidae of the Acrospheres of the Corallimorpharian Corynactis Carnea (Studer, 1878) (Cnidaria, Corallimorpharia, Corallimorp
Belg. J. Zool., 139 (1) : 50-57 January 2009 The cnidae of the acrospheres of the corallimorpharian Corynactis carnea (Studer, 1878) (Cnidaria, Corallimorpharia, Corallimorphidae): composition, abundance and biometry Fabián H. Acuña 1 & Agustín Garese Departamento de Ciencias Marinas. Facultad de Ciencias Exactas y Naturales. Universidad Nacional de Mar del Plata. Funes 3250. 7600 Mar del Plata. Argentina. 1 Researcher of CONICET. Corresponding author : [email protected] ABSTRACT. Corynactis carnea is a common corallimorpharian in the southwestern Atlantic Ocean, particularly in the Argentine Sea, and possesses spherical structures called acrospheres at the tips of its tentacles, characterized by particular cnidae. Twelve specimens were collected to identify and measure the types of cnidae present in the acrospheres, to estimate their abundance and to study the biometry of the different types. The cnidae of the acrospheres are spirocysts, holotrichs, two types of microbasic b-mas- tigophores and two types of microbasic p-mastigophores. Spirocysts were the most abundant type, followed by microbasic p-mas- tigophores and microbasic b-mastigophores; holotrichs were the least abundant. The size of only the spirocysts fitted well to a nor- mal distribution; the other types fitted to a gamma distribution. A high variability in length was observed for each type of cnida. R statistical software was employed for statistical treatments. The cnidae of the acrospheres of C. carnea are compared with those of other species of the genus . KEY WORDS : cnidocysts, biometry, acrospheres, Corallimorpharia, Argentina. INTRODUCTION daria. They vary in terms of their morphology and their functions, which include defence, aggression, feeding and The Corallimorpharia form a relatively small, taxo- larval settlement (F RANCIS , 2004). -
Tentacle Morphological Variation Coincides with Differential Expression of Toxins in Sea Anemones
toxins Article Tentacle Morphological Variation Coincides with Differential Expression of Toxins in Sea Anemones Lauren M. Ashwood 1,* , Michela L. Mitchell 2,3,4,5 , Bruno Madio 6, David A. Hurwood 1,7, Glenn F. King 6,8 , Eivind A. B. Undheim 9,10,11 , Raymond S. Norton 2,12 and Peter J. Prentis 1,7 1 School of Biology and Environmental Science, Faculty of Science, Queensland University of Technology, Brisbane, QLD 4000, Australia; [email protected] (D.A.H.); [email protected] (P.J.P.) 2 Medicinal Chemistry, Monash Institute of Pharmaceutical Sciences, Monash University, 381 Royal Parade, Parkville, VIC 3052, Australia; [email protected] (M.L.M.); [email protected] (R.S.N.) 3 Sciences Department, Museum Victoria, G.P.O. Box 666, Melbourne, VIC 3001, Australia 4 Queensland Museum, P.O. Box 3000, South Brisbane, QLD 4101, Australia 5 Bioinformatics Division, Walter & Eliza Hall Institute of Research, 1G Royal Parade, Parkville, VIC 3052, Australia 6 Institute for Molecular Bioscience, The University of Queensland, St Lucia, QLD 4072, Australia; [email protected] (B.M.); [email protected] (G.F.K.) 7 Centre for Agriculture and the Bioeconomy, Queensland University of Technology, Brisbane, QLD 4000, Australia 8 ARC Centre for Innovations in Peptide and Protein Science, The University of Queensland, St Lucia, QLD 4072, Australia 9 Centre for Advanced Imaging, The University of Queensland, St Lucia, QLD 4072, Australia; [email protected] 10 Centre for Biodiversity Dynamics, Department of Biology, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway 11 Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Blindern, NO-0316 Oslo, Norway Citation: Ashwood, L.M.; Mitchell, 12 ARC Centre for Fragment-Based Design, Monash University, Parkville, VIC 3052, Australia M.L.; Madio, B.; Hurwood, D.A.; * Correspondence: [email protected] King, G.F.; Undheim, E.A.B.; Norton, R.S.; Prentis, P.J. -
The Mitochondrial Genome of the Sea Anemone Stichodactyla Haddoni Reveals Catalytic Introns, Insertion-Like Element, and Unexpected Phylogeny
life Article The Mitochondrial Genome of the Sea Anemone Stichodactyla haddoni Reveals Catalytic Introns, Insertion-Like Element, and Unexpected Phylogeny Steinar Daae Johansen 1,2,*, Sylvia I. Chi 3, Arseny Dubin 1 and Tor Erik Jørgensen 1 1 Faculty of Biosciences and Aquaculture, Nord University, 8049 Bodø, Norway; [email protected] (A.D.); [email protected] (T.E.J.) 2 Department of Medical Biology, Faculty of Health Sciences, UiT—The Arctic University of Norway, 9037 Tromsø, Norway 3 Centre for Innovation, Canadian Blood Services, Ottawa, ON K1G 4J5, Canada; [email protected] * Correspondence: [email protected] Abstract: A hallmark of sea anemone mitochondrial genomes (mitogenomes) is the presence of complex catalytic group I introns. Here, we report the complete mitogenome and corresponding tran- scriptome of the carpet sea anemone Stichodactyla haddoni (family Stichodactylidae). The mitogenome is vertebrate-like in size, organization, and gene content. Two mitochondrial genes encoding NADH dehydrogenase subunit 5 (ND5) and cytochrome c oxidase subunit I (COI) are interrupted with complex group I introns, and one of the introns (ND5-717) harbors two conventional mitochondrial genes (ND1 and ND3) within its sequence. All the mitochondrial genes, including the group I introns, are expressed at the RNA level. Nonconventional and optional mitochondrial genes are present in Citation: Johansen, S.D.; Chi, S.I.; the mitogenome of S. haddoni. One of these gene codes for a COI-884 intron homing endonuclease Dubin, A.; Jørgensen, T.E. The Mitochondrial Genome of the Sea and is organized in-frame with the upstream COI exon. The insertion-like orfA is expressed as RNA Anemone Stichodactyla haddoni and translocated in the mitogenome as compared with other sea anemones. -
National Taxonomic Collections in New Zealand 2015
National Taxonomic Collections in New Zealand December 2015 Cover image: Close-up detail of Corallimorphus niwa Fautin, 2011. This unusual animal is between a sea anemone and a coral, featuring short rounded tentacles and a slit-like mouth. It was collected in 2007 on the Chatham Rise from its muddy deep-sea habitat as part of the Ocean Survey 20/20 Chatham / Challenger Biodiversity and Seabed Habitat Project, jointly funded by the New Zealand Ministry of Fisheries, Land Information New Zealand, National Institute of Water & Atmospheric Research (NIWA), and Department of Conservation. It was described as a new species in 2011 by Dr Daphne Fautin from the University of Kansas, following a visit to the NIWA Invertebrate Collection in 2008. Image credit: Owen Anderson, NIWA. Ocean Survey 20/20 Chatham / Challenger Biodiversity and Seabed Habitat Project. 1 A message from the President of the Royal Society of New Zealand It gives me great pleasure to release this report by the Royal Society of New Zealand’s Expert Panel on National Taxonomic Collections in New Zealand. Taxonomy - the essential science that identifies and names New Zealand’s diverse flora and fauna, and determines what is native and not native to New Zealand - is intrinsic to preserving biological heritage. New Zealanders’ national identity, economic prosperity, environmental management and health and wellbeing depend on this science along with the many millions of specimens in the collections that record this country’s flora and fauna. This report brings together a very wide range of inter-disciplinary evidence about the current state and future potential of our taxonomic collections and proposes what is needed to ensure they can continue to serve New Zealanders into the future. -
On the Classification of Actiniaria
On the Classification of Actiniaria. Part II.—Consideration of the whole group and its relationships, with special reference to forms not treated in Part I.1 By T. A. Stephenson, M.Sc, University College of Wales, Aberystwyth. With 20 Text-figurea. CONTENTS. PAGE 1. INTRODUCTION 493 2. BRIEF HISTORICAL SECTION . 497 3. DISCUSSION or CHARACTERS TO BE TTSED IN CLASSIFICATION . 499 4. SPECIAL DISCUSSIONS AND OUTLINE or NEW SCHEME . 505 5. EVOLUTIONARY SUGGESTIONS ....... 553 6. SUMMARY . 566 7. SHORT GLOSSARY 572 1. INTRODUCTION. IT has been necessary, on account of the length of the present paper, to confine Part II to discussions ; the definitions of families and genera involved, on the lines of those already- given in Part I, will be printed in another issue of this Journal as Part III, which will also contain a list of literature and an index to genera covering Parts II and III. The list of literature will be additional to that printed in Part I, and any numbers given in brackets in the following pages will refer to the two lists as one whole. Part I dealt with a relatively limited and compact group of 1 Part I was published in Vol. 64 of this Journal. NO. 260 L 1 494 • T. A. STEPHENSON anemones in a fairly detailed way ; the residue of forms is much larger, and there will not be space available in Part II for as much detail. I have not set apart a section of the paper as a criticism of the classification I wish to modify, as it has economized space to let objections emerge here and there in connexion with the individual changes suggested. -
Class Anthozoa Ehrenberg, 1834. In: Zhang, Z.-Q
Class Anthozoa Ehrenberg, 18341 (2 subclasses)2 Subclass Hexacorallia Haeckel, 1866 (6 orders) Order Actiniaria Hertwig, 1882 (3 suborders)3 Suborder Endocoelantheae Carlgren, 1925 (2 families) Family Actinernidae Stephenson, 1922 (4 genera, 7 species) Family Halcuriidae Carlgren, 1918 (2 genera, 10 species) Suborder Nynantheae Carlgren, 1899 (3 infraorders) Infraorder Boloceroidaria Carlgren, 1924 (2 families) Family Boloceroididae Carlgren, 1924 (3 genera, 9 species) Family Nevadneidae Carlgren, 1925 (1 genus, 1 species) Infraorder Thenaria Carlgren, 1899 Acontiaria (14 families) Family Acontiophoridae Carlgren, 1938 (3 genera, 5 species) Family Aiptasiidae Carlgren, 1924 (6 genera, 26 species) Family Aiptasiomorphidae Carlgren, 1949 (1 genus, 4 species) Family Antipodactinidae Rodríguez, López-González, & Daly, 2009 (1 genus, 2 species)4 Family Bathyphelliidae Carlgren, 1932 (5 genera, 9 species) Family Diadumenidae Stephenson, 1920 (1 genus, 9 species) Family Haliplanellidae Hand, 1956 (1 genus, 1 species)5 Family Hormathiidae Carlgren, 1932 (20 genera, 131 species) Family Isophelliidae Stephenson, 1935 (7 genera, 46 species) Family Kadosactinidae Riemann-Zürneck, 1991 (2 genera, 6 species) Family Metridiidae Carlgren, 1893 (2 genera, 7 species) Family Nemanthidae Carlgren, 1940 (1 genus, 3 species) Family Sagartiidae Gosse, 1858 (17 genera, 105 species) Family Sagartiomorphidae Carlgren, 1934 (1 genus, 1 species) incertae sedis (3 genera, 5 species) Endomyaria (13 families) Family Actiniidae Rafinesque, 1815 (55 genera, 328 species) -
Zoologische Verhandelingen
Corallimorphus profundus in shallow Antarctic habitats: Bionomics, histology, and systematics (Cnidaria: Hexacorallia) K. Riemann-Zürneck & K. Iken Riemann-Zürneck, K. & K. Iken. Corallimorphus profundus in shallow Antarctic habitats: Bionomics, histology, and systematics (Cnidaria: Hexacorallia). Zool. Verh. Leiden 345, 31.x.2003: 367-386, figs 1-8, 1 table.— ISSN 0024-1652/ISBN 90-73239-89-3. Karin Riemann-Zürneck (Forschungsinstitut Senckenberg, Deutsches Zentrum für Marine Biodiver- sitätsforschung), c/o Alfred-Wegener-Institut für Polar- und Meeresforschung, Postfach 120 161, D- 27570 Bremerhaven. Katrin Iken, Institute of Marine Science, University of Alaska Fairbanks, Fairbanks, AK 99775, USA. Key words: Corallimorpharia; Corallimorphidae; Corallimorphus; Nectactis; Scleractinia; Micrabaciidae; Leptopenus; Stephanophyllia; Letepsammia; histology; cnidom; reproduction; ecology; systematics; Antarctic Peninsula. In March 2000 and November/December 2001 thirteen specimens of Corallimorphus profundus Mose- ley, 1877, a conspicuous, anemone-like cnidarian, were hand-sampled by SCUBA diving in 30 to 40 m depth off US Palmer Station, Antarctic Peninsula. Corallimorphus species were formerly recorded only from deep water habitats from where they had been brought up more or less damaged, with most of their epithelia lost or macerated. The present well preserved specimens offer the opportunity to study various aspects of the species’ morphology and biology, particularly as one mature female contained a full cycle of oogenesis besides two batches of brooded developmental stages. Most of the results obtained demonstrate that the genus Corallimorphus shows features and bionomics that are typical of the Scleractinia. Thus, Moseley’s early assumption (1877) that this genus is distin- guished from certain deep-sea corals such as Stephanophyllia only by the absence of the calcareous skele- ton is largely confirmed, although direct comparison with Moseley’s material was not possible here. -
Cnidaria, Corallimorpharia, Corallimorphidae): Composition, Abundance and Biometry
Belg. J. Zool., 139 (1) : 50-57 January 2009 The enidae of the acrospheres of the corallimorpharianCorynactis carnea (Studer, 1878) (Cnidaria, Corallimorpharia, Corallimorphidae): composition, abundance and biometry Fabián H. Acuña1 & Agustín Garese Departamento de Ciencias Marinas. Facultad de Ciencias Exactasy Naturales. Universidad Nacional de Mar del Plata. Funes 3250. 7600 Mar del Plata. Argentina. 1 Researcher of CONICET. Corresponding author : [email protected]. ar ABSTRACT. Corynactis carnea is a common corallimorpharian in the southwestern Atlantic Ocean, particularly in the Argentine Sea, and possesses spherical structures called acrospheres at the tips of its tentacles, characterized by particular enidae. Twelve specimens were collected to identify and measure the types of enidae present in the acrospheres, to estimate their abundance and to study the biometry of the different types. The enidae of the acrospheres are spirocysts, holotrichs, two types of microbasic b-mas- tigophores and two types of microbasic p-mastigophores. Spirocysts were the most abundant type, followed by microbasic p-mas- tigophores and microbasic b-mastigophores ; holotrichs were the least abundant. The size of only the spirocysts fitted well to a nor mal distribution; the other types fitted to a gamma distribution. A high variability in length was observed for each type of enida. R statistical software was employed for statistical treatments. The enidae of the acrospheres of C. carnea are compared with those of other species of the genus. KEY WORDS : cnidocysts, biometry, acrospheres, Corallimorpharia, Argentina. INTRODUCTION daria. They vary in terms of their morphology and their functions, which include defence, aggression, feeding and The Corallimorpharia form a relatively small, taxo- larval settlement (F r a n c is , 2004). -
Corallimorpharian Transcriptomes and Their Use to Understand Phylogeny and Symbiosis in the Hexacorallia
ResearchOnline@JCU This file is part of the following reference: Lin, Mei-Fang (2016) Corallimorpharian transcriptomes and their use to understand phylogeny and symbiosis in the Hexacorallia. PhD thesis, James Cook University. Access to this file is available from: http://researchonline.jcu.edu.au/48579/ The author has certified to JCU that they have made a reasonable effort to gain permission and acknowledge the owner of any third party copyright material included in this document. If you believe that this is not the case, please contact [email protected] and quote http://researchonline.jcu.edu.au/48579/ CORALLIMORPHARIAN TRANSCRIPTOMES AND THEIR USE TO UNDERSTAND PHYLOGENY AND SYMBIOSIS IN THE HEXACORALLIA PhD Thesis submitted by Mei-Fang LIN, MSc (NTU) in September 2016 Advisors Prof Dr David John Miller Dr Sylvain Forêt Dr Chaolun Allen Chen Dr Marcelo Visentini Kitahara Dr Kyall Zenger For the degree of Doctor of Philosophy Department of Molecular and Cell Biology James Cook University To Su-Hsiang Chen Lin Wen-Chang Lin and Yu-Ning Lin ii Statement of Access I, the undersigned author of this thesis, understand that James Cook University will make it available for use within the university library and by electronic digital format, via the Australian digital theses network, for use elsewhere. I understand that, containing unpublished work, a thesis has significant protection under the Copyright Act. Therefore, all users consulting this work should agree with the following statement: “In consulting this thesis, I agree not to copy or partially paraphrase it in whole or in part without the written consent of the author, and to make proper written acknowledgement of any assistance which I have obtained from it.” Beyond this, I do not place any restriction on access to this thesis.