CO2-Driven Ocean Acidification Weakens Mussel Shell Defense Capacity and Induces Global Molecular Compensatory Responses

Total Page:16

File Type:pdf, Size:1020Kb

CO2-Driven Ocean Acidification Weakens Mussel Shell Defense Capacity and Induces Global Molecular Compensatory Responses Chemosphere 243 (2020) 125415 Contents lists available at ScienceDirect Chemosphere journal homepage: www.elsevier.com/locate/chemosphere CO2-driven ocean acidification weakens mussel shell defense capacity and induces global molecular compensatory responses * Xinguo Zhao a, b, c, Yu Han c, Bijuan Chen a, b, Bin Xia a, b, Keming Qu a, Guangxu Liu c, a Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071, PR China b Laboratory for Marine Ecology and Environment Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266237, PR China c College of Animal Sciences, Zhejiang University, Hangzhou, 310058, PR China highlights graphical abstract OA will damage shell structure, and reduce shell strength and shell closure strength. OA will lead to extracellular acidosis þ and Ca2 deficiency. OA will significantly alter gene expression profile in mantle tissue. OA will weaken mussels’ shell de- fense capacity, and thus reduce their fitness. The findings of this study have sig- nificant ecological and economic implications. article info abstract Article history: Oceanic uptake of atmospheric CO2 is reducing seawater pH and shifting carbonate chemistry within, a Received 23 September 2019 process termed as ocean acidification (OA). Marine mussels are a family of ecologically and economically Received in revised form significant bivalves that are widely distributed along coastal areas worldwide. Studies have demon- 6 November 2019 strated that OA greatly disrupts mussels’ physiological functions. However, the underlying molecular Accepted 18 November 2019 responses (e.g., whether there were any molecular compensation mechanisms) and the extent to which Available online 19 November 2019 OA affects mussel shell defense capacity remain largely unknown. In this study, the thick shell mussels Handling Editor: Jim Lazorchak Mytilus coruscus were exposed to the ambient pH (8.1) or one of two lowered pH levels (7.8 and 7.4) for 40 days. The results suggest that future OA will damage shell structure and weaken shell strength and Keywords: shell closure strength, ultimately reducing mussel shell defense capacity. In addition, future OA will also þ þ Ocean acidification disrupt haemolymph pH and Ca2 homeostasis, leading to extracellular acidosis and Ca2 deficiency. Mussel Mantle transcriptome analyses indicate that mussels will adopt a series of molecular compensatory Calcification responses to mitigate these adverse effects; nevertheless, weakened shell defense capacity will increase Acid-base status mussels’ susceptibility to predators, parasites and pathogens, and thereby reduce their fitness. Overall, Defense capacity the findings of this study have significant ecological and economic implications, and will enhance our Mantle transcriptome sequencing understanding of the future of the mussel aquaculture industry and coastal ecosystems. © 2019 Elsevier Ltd. All rights reserved. 1. Introduction Anthropogenic activities (e.g., fossil fuel burning) emit large * Corresponding author. quantities of carbon dioxide (CO ) into the atmosphere. E-mail address: [email protected] (G. Liu). 2 https://doi.org/10.1016/j.chemosphere.2019.125415 0045-6535/© 2019 Elsevier Ltd. All rights reserved. 2 X. Zhao et al. / Chemosphere 243 (2020) 125415 Approximately one third of the CO2 is eventually absorbed by the show the physiological mechanisms underlying the observed al- global ocean (Sabine et al., 2004), leading to surface seawater pH terations in shell defense capacity. Importantly, owing to mantle’s reduction and carbonate chemistry shifts, a phenomenon known as critical roles in shell formation and growth, gene expression pro- ocean acidification (OA) (Caldeira and Wickett, 2003). Since the files of mantle tissue were investigated through transcriptome Industrial Revolution, surface seawater pH has already decreased sequencing to uncover the underlying molecular responses to OA. by 0.1 units, from approximately 8.21 to the current level of about 8.10 (Caldeira and Wickett, 2003). According to the Representative Concentration Pathway (RCP) 8.5 scenario of the Intergovern- 2. Materials and methods mental Panel on Climate Change (IPCC), the average surface seawater pH will further decrease by 0.3e0.4 and 0.7e0.8 units by 2.1. Animal collection and acclimation the end of the 21st and 23rd centuries, respectively (IPCC et al., 2014). Previous studies have suggested that OA poses a threat to Thick shell mussels M. coruscus (shell length of 21.91 ± 2.34 mm) a wide variety of marine organisms, especially calcifying organisms were collected from an intertidal site on Dongtou Island, Wenzhou, (Hofmann et al., 2010; Kerr, 2010). However, the responses of ma- China (121.22 E, 27.75 N), where the natural seawater pH ranges rine organisms to OA have been found to be species-specific and to from 8.0 to 8.2. The mussels were directly transported to the vary with life stage (Kroeker et al., 2010, 2013; Ries et al., 2009). For Qingjiang Station of Zhejiang Mariculture Research Institute, gently example, OA leads to decreases in metabolic rates in the blood clam cleaned of epibionts without damaging the shells, and acclimated Tegillarca granosa (Zhao et al., 2017b), wherease it leads to increases for two weeks in filtered and UV-irradiated natural seawater with in metabolic rates in the blue mussel Mytilus edulis (Thomsen and þ continuous aeration prior to the experiments. The seawater pH was Melzner, 2010). Similarly, the Ca2 content of the red king crab controlled at 8.10 ± 0.06, the temperature was controlled at Paralithodes camtschaticus is increased at the larvae stage, but re- 23 ± 0.4 C, and the salinity was controlled at 23 ± 0.5‰. The mains unchanged at the juvenile stage upon OA exposure (Long mussels were fed twice daily with the microalgae Platymonas et al., 2013a, 2013b). Regarding the species-specific and life stage subcordiformis at a rate of ~5% dry tissue weight, according to variations, the current understanding of biological responses to OA O’Donnell et al. (2013). Excess food and feces were removed daily cannot be simply applied to other species and/or life stages. through seawater changes, in which seawater was removed by Therefore, more research is needed to increase our understanding siphoning, followed by refilling with seawater pre-equilibrated to of the effects of OA on marine organisms and ecosystems. the desired pH values. Marine mussels are a family of ecologically and economically significant bivalve species that are widely distributed along coastal areas worldwide. By aggregating into beds, marine mussels create habitats for other organisms, and are thus recognized as important 2.2. Experimental design and seawater parameters marine ecosystem engineers (Borthagaray and Carranza, 2007). Many of them are important aquaculture species and have been Following acclimation, the mussels were randomly assigned to human food for thousands of years (Ponce Oliva et al., 2019). Ac- an ambient pH (8.1) group and two lowered pH (7.8 and 7.4) groups. cording to a report by the Food and Agriculture Organization of the The ambient seawater pH level (8.1) served as the control, while the United Nations (FAO), the mussel aquaculture industry was worth lowered pH levels of 7.8 and 7.4 were set to mimic the oceanic approximately 4.0 billion USD in 2016 (FAO yearbook, 2018). surface pH conditions projected for the years 2100 and 2300, Therefore, increasing attention has been paid to understanding respectively (IPCC et al., 2014). The seawater pH levels were ach- how OA affects marine mussels. Current evidence demonstrates ieved and maintained by continuously bubbling with CO2 gas that OA will exert significant negative effects on various physio- mixture, obtained by mixing CO2-free air and pure CO2 gas at logical processes in marine mussels, especially leading to the controlled flow rates, according to Zhao et al. (2017a). All pH levels reduction in calcification and even to shell damage (Asplund et al., were conducted with 10 replicate chambers that contained 10 in- 2014; Fitzer et al., 2015; Li et al., 2015a; Melzner et al., 2011; Sadler dividuals each and filled with approximately 10 L of filtered and et al., 2018; Thomsen et al., 2010, 2013). However, previous studies UV-irradiated natural seawater with the desired pH value have mainly focused on the physiological effects of OA, leaving the (Table S1). The mussels were fed with the microalgae underlying molecular responses (e.g., whether there were any P. subcordiformis as described above. The seawater was maintained molecular compensation mechanisms) largely overlooked. In at 23 C using temperature regulators, and was changed daily. addition, previous studies have mostly been performed with the Seawater chemistry parameters, including the pH, salinity, total blue mussel M. edulis. Considering the species-specific variations in alkalinity (TA) and carbonate system parameters, were monitored responses to OA mentioned above, whether findings in other spe- daily to ensure that no substantial fluctuations occurred cies also apply to mussel species such as M. coruscus needs to be throughout the experiment period. Seawater pH levels were investigated. Moreover, although shell defense capacity is crucial measured using a Sartorius PB-10 pH meter (Sartorius, Germany) for the survival of individual mussels, the extent to which OA affects calibrated with standard NBS buffers. Salinity was determined with this capacity remains largely unknown. a Multi 3410 conductivity meter
Recommended publications
  • CO2-Induced Ph Reduction Increases Physiological Toxicity of Nano-Tio2
    www.nature.com/scientificreports OPEN CO2-induced pH reduction increases physiological toxicity of nano-TiO2 in the mussel Mytilus coruscus Received: 27 July 2016 Menghong Hu1,2,*, Daohui Lin2,3,*, Yueyong Shang1, Yi Hu3, Weiqun Lu1, Xizhi Huang1, Accepted: 02 December 2016 Ke Ning1, Yimin Chen1 & Youji Wang1,2 Published: 05 January 2017 The increasing usage of nanoparticles has caused their considerable release into the aquatic environment. Meanwhile, anthropogenic CO2 emissions have caused a reduction of seawater pH. However, their combined effects on marine species have not been experimentally evaluated. This study estimated the physiological toxicity of nano-TiO2 in the mussel Mytilus coruscus under high pCO2 (2500–2600 μatm). We found that respiration rate (RR), food absorption efficiency (AE), clearance rate (CR), scope for growth (SFG) and O:N ratio were significantly reduced by nano-TiO2, whereas faecal organic weight rate and ammonia excretion rate (ER) were increased under nano-TiO2 conditions. High pCO2 exerted lower effects on CR, RR, ER and O:N ratio than nano-TiO2. Despite this, significant interactions of CO2-induced pH change and nano-TiO2 were found in RR, ER and O:N ratio. PCA showed close relationships among most test parameters, i.e., RR, CR, AE, SFG and O:N ratio. The normal physiological responses were strongly correlated to a positive SFG with normal pH and no/low nano- TiO2 conditions. Our results indicate that physiological functions of M. coruscus are more severely impaired by the combination of nano-TiO2 and high pCO2. Increasing production of engineered nanoparticles (NPs) has raised concern about their potential biological and 1 ecological effects .
    [Show full text]
  • Two Toll-Like Receptors Identified in the Mantle of Mytilus Coruscus Are
    Fish and Shellfish Immunology 90 (2019) 134–140 Contents lists available at ScienceDirect Fish and Shellfish Immunology journal homepage: www.elsevier.com/locate/fsi Short sequence report Two toll-like receptors identified in the mantle of Mytilus coruscus are abundant in haemocytes T Yi-Feng Lia,b,c,1, Yu-Zhu Liua,b,1, Yan-Wen Chena,b, Ke Chena,b, Frederico M. Batistad, João C.R. Cardosod, Yu-Ru Chena,b, Li-Hua Penga,b, Ya Zhanga,b, You-Ting Zhua,b,c, ∗∗ ∗ Xiao Lianga,b,c, Deborah M. Powera,b,d, , Jin-Long Yanga,b,c, a International Research Center for Marine Biosciences, Ministry of Science and Technology, Shanghai Ocean University, Shanghai, China b Key Laboratory of Exploration and Utilization of Aquatic Genetic Resources, Ministry of Education, Shanghai Ocean University, Shanghai, China c National Demonstration Center for Experimental Fisheries Science Education, Shanghai Ocean University, Shanghai, China d Centro de Ciências do Mar (CCMAR), Universidade do Algarve, Campus de Gambelas, Faro, Portugal ARTICLE INFO ABSTRACT Keywords: Toll-like receptors (TLRs) are a large family of pattern recognition receptors (PRRs) that play a critical role in Mytilus coruscus innate immunity. TLRs are activated when they recognize microbial associated molecular patterns (MAMPs) of Toll-like receptors bacteria, viruses, or fungus. In the present study, two TLRs were isolated from the mantle of the hard-shelled Haemocytes mussel (Mytilus coruscus) and designated McTLR2 and McTLR3 based on their sequence similarity and phylo- Mantle genetic clustering with Crassostrea gigas, CgiTLR2 and CgiTLR3, respectively. Quantitative RT-PCR analysis demonstrated that McTLR2 and McTLR3 were constitutively expressed in many tissues but at low abundance.
    [Show full text]
  • Development of Microsatellite Markers for a Hard-Shelled Mussel, Mytilus Coruscus, and Cross-Species Transfer J.H
    Development of microsatellite markers for a hard-shelled mussel, Mytilus coruscus, and cross-species transfer J.H. Kang1, Y.K. Kim1, J.Y. Park1, E.S. Noh1, J.E. Jeong2, Y.S. Lee2 and T.J. Choi3 1Biotechnology Research Division, National Fisheries Research and Development Institute, Busan, Republic of Korea 2Department of Life Science and Biotechnology, Soonchunhyang University, Asan, Republic of Korea 3Department of Microbiology, Pukyong National University, Busan, Republic of Korea Corresponding author: T.J. Choi E-mail: [email protected] Genet. Mol. Res. 12 (3): 4009-4017 (2013) Received February 18, 2013 Accepted July 5, 2013 Published September 27, 2013 DOI http://dx.doi.org/10.4238/2013.September.27.2 ABSTRACT. The Korean mussel Mytilus coruscus, an endemic marine bivalve mollusk, is economically important. Its population is currently decreasing due to overexploitation and invasion of a more competitive species, Mytilus galloprovincialis. In this study, microsatellite markers for M. coruscus were developed using a cost-effective pyrosequencing technique. Among the 33,859 dinucleotide microsatellite sequences identified, 176 loci that contained more than 8 CA, CT, or AT repeats were selected for primer synthesis. Sixty-four (36.4%) primer sets were produced from the 100- to 200-bp polymerase chain reaction products obtained from 2 M. coruscus individuals. Twenty of these were chosen to amplify DNA from 82 M. coruscus individuals, and 18 polymorphic loci and 2 monomorphic loci were selected as microsatellite markers. The number of alleles and the allele richness of the polymorphic loci ranged from 2 to 22 and from 2.0 to 19.7 with means of 10.8 and 10.1, Genetics and Molecular Research 12 (3): 4009-4017 (2013) ©FUNPEC-RP www.funpecrp.com.br J.H.
    [Show full text]
  • Genomics and Transcriptomics of the Green Mussel Explain the Durability
    www.nature.com/scientificreports OPEN Genomics and transcriptomics of the green mussel explain the durability of its byssus Koji Inoue1*, Yuki Yoshioka1,2, Hiroyuki Tanaka3, Azusa Kinjo1, Mieko Sassa1,2, Ikuo Ueda4,5, Chuya Shinzato1, Atsushi Toyoda6 & Takehiko Itoh3 Mussels, which occupy important positions in marine ecosystems, attach tightly to underwater substrates using a proteinaceous holdfast known as the byssus, which is tough, durable, and resistant to enzymatic degradation. Although various byssal proteins have been identifed, the mechanisms by which it achieves such durability are unknown. Here we report comprehensive identifcation of genes involved in byssus formation through whole-genome and foot-specifc transcriptomic analyses of the green mussel, Perna viridis. Interestingly, proteins encoded by highly expressed genes include proteinase inhibitors and defense proteins, including lysozyme and lectins, in addition to structural proteins and protein modifcation enzymes that probably catalyze polymerization and insolubilization. This assemblage of structural and protective molecules constitutes a multi-pronged strategy to render the byssus highly resistant to environmental insults. Mussels of the bivalve family Mytilidae occur in a variety of environments from freshwater to deep-sea. Te family incudes ecologically important taxa such as coastal species of the genera Mytilus and Perna, the freshwa- ter mussel, Limnoperna fortuneri, and deep-sea species of the genus Bathymodiolus, which constitute keystone species in their respective ecosystems 1. One of the most important characteristics of mussels is their capacity to attach to underwater substrates using a structure known as the byssus, a proteinous holdfast consisting of threads and adhesive plaques (Fig. 1)2. Using the byssus, mussels ofen form dense clusters called “mussel beds.” Te piled-up structure of mussel beds enables mussels to support large biomass per unit area, and also creates habitat for other species in these communities 3,4.
    [Show full text]
  • Mytilus Coruscus Gould, 1861 (Bivalvia, Mytilidae)
    Ruthenica, 2005, 15(2): 95-98. ©Ruthenica, 2005 О сохранении названия Mytilus coruscus Gould, 1861 (Bivalvia, Mytilidae) К. А. ЛУТАЕНКО Институт биологии моря Дальневосточного отделения Российской академии наук, ул. Пальчевского, 17, Владивосток 690041; E-mail: [email protected] On the conservation of the name Mytilus co- более поздней работе К. Лишке (трехтомном Ja- ruscus Gould, 1861 (Bivalvia, Mytilidae) panische Meeres-Conchylien..., 1869, т. 1), приве- ден в работе Р. фон Козела [Cosel, 1998: 17, fig. K.A. LUTAENKO 25b]. Institute of Marine Biology, Far Eastern Branch of the Характерным морфологическим признаком Russian Academy of Sciences, Palchevskogo Str., 17, Vla- M. coruscus является наличие дорсального крыла divostok 690041, RUSSIA, E-mail: [email protected] rye.ru и сопутствующей депрессии, а также выпуклос- ти края раковины в области постеродорсального ABSTRACT. Widely used name Mytilus coruscus перехода, что позволило О.А. Скарлато и Я.И. Gould, 1861, a common mussel in north-western Pa- Старобогатову [1979] установить монотипичес- cific, appeared to be a junior synonym of Mytilus кий подрод Mytilus (Crassimytilus) Scarlato et Sta- unguiculatus Valenciennes, 1858. According to the robogatov, 1979. В этом отношении резонно со- article 23.9.1.1 of ICZN, the name M. coruscus is гласиться с А.И. Кафановым [1987] и Ю. Коаном qualified as nomen protectum. с соавт. [Coan et al., 2000], которые синонимизи- ровали указанный подрод с Mytilus s.s. Название M. unguiculatus практически не употреблялось в литературе. Мы нашли его упо- Ю.И. Кантор и А.В. Сысоев [Kantor, Sysoev, минание в монографии Л. фон Шренка [Schrenck, 2002] недавно опубликовали интересное сооб- 1867: 604] и в ревизии митилид Э.
    [Show full text]
  • Evolutionary History of DNA Methylation Related Genes in Bivalvia: New Insights from Mytilus Galloprovincialis
    fevo-09-698561 July 3, 2021 Time: 17:34 # 1 ORIGINAL RESEARCH published: 09 July 2021 doi: 10.3389/fevo.2021.698561 Evolutionary History of DNA Methylation Related Genes in Bivalvia: New Insights From Mytilus galloprovincialis Marco Gerdol1, Claudia La Vecchia2, Maria Strazzullo2, Pasquale De Luca3, Stefania Gorbi4, Francesco Regoli4, Alberto Pallavicini1,2 and Enrico D’Aniello2* 1 Department of Life Sciences, University of Trieste, Trieste, Italy, 2 Department of Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, Naples, Italy, 3 Research Infrastructures for Marine Biological Resources Department, Stazione Zoologica Anton Dohrn, Naples, Italy, 4 Department of Life and Environmental Sciences, Polytechnic University of Marche, Ancona, Italy DNA methylation is an essential epigenetic mechanism influencing gene expression in all organisms. In metazoans, the pattern of DNA methylation changes during embryogenesis and adult life. Consequently, differentiated cells develop a stable Edited by: and unique DNA methylation pattern that finely regulates mRNA transcription Giulia Furfaro, during development and determines tissue-specific gene expression. Currently, DNA University of Salento, Italy methylation remains poorly investigated in mollusks and completely unexplored in Reviewed by: Celine Cosseau, Mytilus galloprovincialis. To shed light on this process in this ecologically and Université de Perpignan Via Domitia, economically important bivalve, we screened its genome, detecting sequences France Ricard Albalat, homologous to DNA methyltransferases (DNMTs), methyl-CpG-binding domain (MBD) University of Barcelona, Spain proteins and Ten-eleven translocation methylcytosine dioxygenase (TET) previously *Correspondence: described in other organisms. We characterized the gene architecture and protein Enrico D’Aniello domains of the mussel sequences and studied their phylogenetic relationships with [email protected] the ortholog sequences from other bivalve species.
    [Show full text]
  • Accumulation of PAH in Bivalves
    Accumulation of PAH in bivalves (Crassostrea gigas andMytilus coruscus) from Zhejiang coastal,China , and associtated human health risk assessment lei li Chinese Academy of Fishery Sciences East China Sea Fishery Research Institute ziniu li Chinese Academy of Fishery Sciences East China Sea Fishery Research Institute guodong xv Chinese Academy of Fishery Sciences East China Sea Fishery Research Institute cuihua wang Chinese Academy of Fishery Sciences East China Sea Fishery Research Institute mei jiang ( [email protected] ) Chinese Academy of Fishery Sciences East China Sea Fishery Research Institute Research article Keywords: Accumulation, PAH, bivalve, health risk assessment Posted Date: March 1st, 2021 DOI: https://doi.org/10.21203/rs.3.rs-189664/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/16 Abstract The paper reported the determination on PAHs concentrations in bivalves (Crassostrea gigas and Mytilus coruscus) from the Zhejiang coastal of China, and evaluate their composition, and assess their human health risk. The content of ΣPAHs in the two bivalves ranged from 48.30 to 61.08 ng/g. The main component of PAHs was Phenanthrene(11.08–15.79 ng/g). Comparing with HMW-PAHs, PAHs dominated by LMW-PAHs have higher absorption rates and lower purication rates. In the local coastal environment, the pyrolytic sources were an important role of the PAH pollution. At present, it assessed the health risks on consumption the two bivalves species,there was no threat to human health by eating shellsh accumulated PAH intakes, but there were some carcinogenic risks for heavier consumption of this two bivalves.
    [Show full text]
  • Evidence of Multiple Genome Duplication Events in Mytilus Evolution
    bioRxiv preprint doi: https://doi.org/10.1101/2021.08.17.456601; this version posted August 17, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Evidence of multiple genome duplication events in Mytilus evolution Ana Corrochano-Fraile1, Andrew Davie1, Stefano Carboni1,*, and Michael¨ Bekaert1 1Institute of Aquaculture, University of Stirling, Stirling, UK Corresponding author: Stefano Carboni1 Email address: [email protected] ABSTRACT Molluscs remain one significantly under-represented taxa amongst available genomic resources, despite being the second-largest animal phylum and the recent advances in genomes sequencing technologies and genome assembly techniques. With the present work, we want to contribute to the growing efforts by filling this gap, presenting a new high-quality reference genome for Mytilus edulis and investigating the evolutionary history within the Mytilidae family, in relation to other species in the class Bivalvia. Here we present, for the first time, the discovery of multiple whole genome duplication events in the Mytilidae family and, more generally, in the class Bivalvia. In addition, the calculation of evolution rates for three species of the Mytilinae subfamily sheds new light onto the taxa evolution and highlights key orthologs of interest for the study of Mytilus species divergences. The reference genome presented here will enable the correct identification of molecular markers for evolutionary, population genetics, and conservation studies. Mytilidae have the capability to become a model shellfish for climate change adaptation using genome-enabled systems biology and multi- disciplinary studies of interactions between abiotic stressors, pathogen attacks, and aquaculture practises.
    [Show full text]
  • The Whole-Genome Sequencing and Hybrid Assembly of Mytilus Coruscus
    BRIEF RESEARCH REPORT published: 08 May 2020 doi: 10.3389/fgene.2020.00440 The Whole-Genome Sequencing and Hybrid Assembly of Mytilus coruscus Ronghua Li 1,2,3, Weijia Zhang 1, Junkai Lu 1,2, Zhouyi Zhang 1, Changkao Mu 1,2, Weiwei Song 1,2, Herve Migaud 1,2,3, Chunlin Wang 1,2* and Michaël Bekaert 3* 1 Key Laboratory of Applied Marine Biotechnology, Ministry of Education, Ningbo University, Ningbo, China, 2 Collaborative Innovation Center for Zhejiang Marine High-Efficiency and Healthy Aquaculture, Ningbo University, Ningbo, China, 3 Faculty of Natural Sciences, Institute of Aquaculture, University of Stirling, Stirling, United Kingdom The hard-shelled mussel (Mytilus coruscus) is an economically important shellfish that has been cultivated for the last decade. Due to over-exploitation, most mussel stocks have dramatically declined. Efforts to study this species’ natural distribution, genetics, breeding, and cultivation have been hindered by the lack of a high-quality reference genome. To address this, we produced a hybrid high-quality reference genome of M. coruscus using a long-read platform to assemble the genome and short-read, high-quality technology to accurately correct for sequence errors. The genome was assembled into 10,484 scaffolds, a total length of 1.90 Gb, and a scaffold N50 of 898 kb. Edited by: Ab initio annotation of the M. coruscus genome assembly identified a total of 42,684 Peng Xu, genes. This accurate reference genome of M. coruscus provides an essential resource Xiamen University, China with the advantage of enabling the genome-scale selective breeding of M. coruscus. Reviewed by: Chao Bian, More importantly, it will also help in deciphering the speciation and local adaptation of Beijing Genomics Institute (BGI), China the Mytilus species.
    [Show full text]
  • “Mytilus” (Mollusca: Bivalvia: Mytilidae) from the Lower Miocene Iwamura Group, Central Japan
    Bulletin of the Mizunami Fossil Museum, no. 44 (2018), p. 51–58, 4 figs., 1 table. © 2018, Mizunami Fossil Museum The identity of the large “Mytilus” (Mollusca: Bivalvia: Mytilidae) from the lower Miocene Iwamura Group, central Japan Yukito Kurihara* and Kazuhiro Ohta** *Faculty of Education (Geology), Mie University, 1577 Kurimamachiya-cho, Tsu, Mie 514-8507, Japan <[email protected]> *Futamiura Elementary School, 1500 So, Futami-cho, Ise, Mie 519-0606, Japan Abstract The large mytilid, previously identified as the modern species Mytilus coruscus Gould, 1861, from the lower Miocene Iwamura Group of central Japan, is reexamined taxonomically on the basis of newly obtained well-preserved specimens. Careful observation of these specimens reveals that they can be reidentified as another modern species, Crenomytilus grayanus (Dunker, 1853). This unequivocally is the oldest record of C. grayanus, extending its stratigraphic range back to the upper lower Miocene. The fossil record of M. coruscus in the Japanese Neogene requires a taxonomic re-evaluation. Keywords: Mytilidae, Mytilus coruscus, Crenomytilus grayanus, Miocene, Iwamura Group, Gifu Prefecture Introduction and Crenomytilus have been listed and sometimes illustrated from the Japanese Miocene, but their shell morphology was The genus Mytilus is one of the most cosmopolitan of all rarely discussed in detail. Therefore, the taxonomy and marine genera, occurring at higher latitudes in all oceans biogeographic history of these clades remain uncertain. and major seas of both Northern and Southern A large species of fossil mytilid bivalve from the lower Hemispheres (Seed, 1992). Carter and Seed (1998) briefly Miocene Iwamura and Mizunami Groups in central Japan reviewed the fossil record of Mytilus and its related genera, has previously been referred to the modern species Mytilus and stated that the known Cenozoic fossil record of Mytilus coruscus Gould, 1861 (e.g., Itoigawa, 1960; Itoigawa et al., does not begin until the Oligocene.
    [Show full text]
  • Deep-Sea Bacteria Trigger Settlement and Metamorphosis of the Mussel
    www.nature.com/scientificreports OPEN Deep‑sea bacteria trigger settlement and metamorphosis of the mussel Mytilus coruscus larvae Rui‑Heng Chang1,2,5, Li‑Ting Yang1,2,5, Ming Luo3,5, Yihan Fang1,2, Li‑Hua Peng1,2, Yuli Wei1,4, Jiasong Fang1,4, Jin‑Long Yang1,2* & Xiao Liang1,2* Bacteria from coast seawaters are widely known to induce larval recruitment of many invertebrates. However, whether and how deep‑sea bacteria, that play crucial roles in the ecological and biogeochemical cycles, promote larval recruitment remains little known. Here, the interaction between deep‑sea bacterial bioflms (BFs) and Mytilus coruscus larvae was tested. All these nine deep‑sea bacterial isolates triggered planktonic‑sessile transition, and the highest percentage of post‑larvae was observed in Virgibacillus sp. 1 BF. Except for Pseudomonas sp. 3, Pseudoalteromonas sp. 32 and Bacillus sp. 13, other BF cell densities were signifcantly related to their corresponding inductive efciency. The deep‑sea Virgibacillus sp. 1 BFʼs cue that triggers planktonic‑sessile transition was uncovered. Treating Virgibacillus sp. 1 BFs through physic‑chemical approaches reduced inducing impact and cell survival. The conditioned water collaborated with formalin‑fxed Virgibacillus sp. 1 BF hoisted planktonic‑sessile transition efciency in comparison to each one alone. Thus, two signals derived from deep‑sea bacteria trigger planktonic‑sessile transition in M. coruscus. This fnding frstly demonstrates that deep‑sea bacteria has good potential for application in the mussel seed production and provides novel insight to clarify the bacteria‑mussel interaction. Mytilus coruscus is an economically important species of mussel in China1, which is widely distributed in coastal areas.
    [Show full text]
  • Extracellular Vesicles and Post-Translational Protein
    biology Article Extracellular Vesicles and Post-Translational Protein Deimination Signatures in Mollusca—The Blue Mussel (Mytilus edulis), Soft Shell Clam (Mya arenaria), Eastern Oyster (Crassostrea virginica) and Atlantic Jacknife Clam (Ensis leei) Timothy J. Bowden 1 , Igor Kraev 2 and Sigrun Lange 3,* 1 Aquaculture Research Institute, School of Food & Agriculture, University of Maine, Orono, ME 04469-5735, USA; [email protected] 2 Electron Microscopy Suite, Faculty of Science, Technology, Engineering and Mathematics, Open University, Milton Keynes MK7 6AA, UK; [email protected] 3 Tissue Architecture and Regeneration Research Group, School of Life Sciences, University of Westminster, London W1W 6UW, UK * Correspondence: [email protected]; Tel.: +44-(0)207-911-5000 Received: 29 October 2020; Accepted: 23 November 2020; Published: 25 November 2020 Simple Summary: Oysters and clams form an important component of the food chain and food security and are of considerable commercial value worldwide. They are affected by pollution and climate change, as well as a range of infections, some of which are opportunistic. For aquaculture purposes they are furthermore of great commercial value and changes in their immune responses can also serve as indicators of changes in ocean environments. Therefore, studies into understanding new factors in their immune systems may aid new biomarker discovery and are of considerable value. This study assessed new biomarkers relating to changes in protein function in four economically important marine molluscs, the blue mussel, soft shell clam, Eastern oyster, and Atlantic jacknife clam. These findings indicate novel regulatory mechanisms of important metabolic and immunology related pathways in these mollusks.
    [Show full text]