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The 2014 Golden Gate National Parks Bioblitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event
National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 ON THIS PAGE Photograph of BioBlitz participants conducting data entry into iNaturalist. Photograph courtesy of the National Park Service. ON THE COVER Photograph of BioBlitz participants collecting aquatic species data in the Presidio of San Francisco. Photograph courtesy of National Park Service. The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 Elizabeth Edson1, Michelle O’Herron1, Alison Forrestel2, Daniel George3 1Golden Gate Parks Conservancy Building 201 Fort Mason San Francisco, CA 94129 2National Park Service. Golden Gate National Recreation Area Fort Cronkhite, Bldg. 1061 Sausalito, CA 94965 3National Park Service. San Francisco Bay Area Network Inventory & Monitoring Program Manager Fort Cronkhite, Bldg. 1063 Sausalito, CA 94965 March 2016 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Report Series is used to disseminate comprehensive information and analysis about natural resources and related topics concerning lands managed by the National Park Service. -
<I>Phylloporus
VOLUME 2 DECEMBER 2018 Fungal Systematics and Evolution PAGES 341–359 doi.org/10.3114/fuse.2018.02.10 Phylloporus and Phylloboletellus are no longer alone: Phylloporopsis gen. nov. (Boletaceae), a new smooth-spored lamellate genus to accommodate the American species Phylloporus boletinoides A. Farid1*§, M. Gelardi2*, C. Angelini3,4, A.R. Franck5, F. Costanzo2, L. Kaminsky6, E. Ercole7, T.J. Baroni8, A.L. White1, J.R. Garey1, M.E. Smith6, A. Vizzini7§ 1Herbarium, Department of Cell Biology, Micriobiology and Molecular Biology, University of South Florida, Tampa, Florida 33620, USA 2Via Angelo Custode 4A, I-00061 Anguillara Sabazia, RM, Italy 3Via Cappuccini 78/8, I-33170 Pordenone, Italy 4National Botanical Garden of Santo Domingo, Santo Domingo, Dominican Republic 5Wertheim Conservatory, Department of Biological Sciences, Florida International University, Miami, Florida, 33199, USA 6Department of Plant pathology, University of Florida, Gainesville, Florida 32611, USA 7Department of Life Sciences and Systems Biology, University of Turin, Viale P.A. Mattioli 25, I-10125 Torino, Italy 8Department of Biological Sciences, State University of New York – College at Cortland, Cortland, NY 1304, USA *Authors contributed equally to this manuscript §Corresponding authors: [email protected], [email protected] Key words: Abstract: The monotypic genus Phylloporopsis is described as new to science based on Phylloporus boletinoides. This Boletales species occurs widely in eastern North America and Central America. It is reported for the first time from a neotropical lamellate boletes montane pine woodland in the Dominican Republic. The confirmation of this newly recognised monophyletic genus is molecular phylogeny supported and molecularly confirmed by phylogenetic inference based on multiple loci (ITS, 28S, TEF1-α, and RPB1). -
Biological Diversity
From the Editors’ Desk….. Biodiversity, which is defined as the variety and variability among living organisms and the ecological complexes in which they occur, is measured at three levels – the gene, the species, and the ecosystem. Forest is a key element of our terrestrial ecological systems. They comprise tree- dominated vegetative associations with an innate complexity, inherent diversity, and serve as a renewable resource base as well as habitat for a myriad of life forms. Forests render numerous goods and services, and maintain life-support systems so essential for life on earth. India in its geographical area includes 1.8% of forest area according to the Forest Survey of India (2000). The forests cover an actual area of 63.73 million ha (19.39%) and consist of 37.74 million ha of dense forests, 25.51 million ha of open forest and 0.487 million ha of mangroves, apart from 5.19 million ha of scrub and comprises 16 major forest groups (MoEF, 2002). India has a rich and varied heritage of biodiversity covering ten biogeographical zones, the trans-Himalayan, the Himalayan, the Indian desert, the semi-arid zone(s), the Western Ghats, the Deccan Peninsula, the Gangetic Plain, North-East India, and the islands and coasts (Rodgers; Panwar and Mathur, 2000). India is rich at all levels of biodiversity and is one of the 12 megadiversity countries in the world. India’s wide range of climatic and topographical features has resulted in a high level of ecosystem diversity encompassing forests, wetlands, grasslands, deserts, coastal and marine ecosystems, each with a unique assemblage of species (MoEF, 2002). -
<I>Lepiota Brunneoincarnata</I>
ISSN (print) 0093-4666 © 2013. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON http://dx.doi.org/10.5248/126.133 Volume 126, pp. 133–141 October–December 2013 Lepiota brunneoincarnata and L. subincarnata: distribution and phylogeny A. Razaq1*, E.C. Vellinga2, S. Ilyas1 & A.N. Khalid1 1Department of Botany, University of the Punjab, Lahore. 54590, Pakistan 2Department of Plant and Microbial Biology, University of California Berkeley California USA *Correspondence to: [email protected] Abstract — An updated phylogeny of the clade of toxic Lepiota species is presented, and new insights in the distribution of L. brunneoincarnata and L. subincarnata are given. Lepiota brunneoincarnata is widespread in Europe and temperate Asia, and L. subincarnata is now known from Asia, Europe, and North America. Morphological and anatomical descriptions are provided for these two species based on material from the western Himalayan forests in Pakistan, where they are reported for the first time. Keywords — amatoxins, lepiotaceous fungi, mushroom diversity, rDNA Introduction Among lepiotaceous fungi the genus Lepiota (Pers.) Gray (Agaricales, Basidiomycota) has a worldwide distribution and is highly diversified (Bon 1993; Ahmad et al. 1997; Vellinga 2003; Kirk et al. 2008; Razaq et al. 2012; Nawaz et al. 2013). The genus is characterized by having a scaly (rarely smooth) pileus, free lamellae, partial veil in the form of annulus, a universal veil, smooth white dextrinoid spores (in most species), and clamp connections (present in all but one or two species) (Vellinga 2001, Kumar & Manimohan 2009). The nature of the pileus covering elements and the spore shape are very important characters for infrageneric classification (Candusso & Lanzoni 1990; Bon 1993; Vellinga 2001, 2003). -
A Nomenclatural Study of Armillaria and Armillariella Species
A Nomenclatural Study of Armillaria and Armillariella species (Basidiomycotina, Tricholomataceae) by Thomas J. Volk & Harold H. Burdsall, Jr. Synopsis Fungorum 8 Fungiflora - Oslo - Norway A Nomenclatural Study of Armillaria and Armillariella species (Basidiomycotina, Tricholomataceae) by Thomas J. Volk & Harold H. Burdsall, Jr. Printed in Eko-trykk A/S, Førde, Norway Printing date: 1. August 1995 ISBN 82-90724-14-4 ISSN 0802-4966 A Nomenclatural Study of Armillaria and Armillariella species (Basidiomycotina, Tricholomataceae) by Thomas J. Volk & Harold H. Burdsall, Jr. Synopsis Fungorum 8 Fungiflora - Oslo - Norway 6 Authors address: Center for Forest Mycology Research Forest Products Laboratory United States Department of Agriculture Forest Service One Gifford Pinchot Dr. Madison, WI 53705 USA ABSTRACT Once a taxonomic refugium for nearly any white-spored agaric with an annulus and attached gills, the concept of the genus Armillaria has been clarified with the neotypification of Armillaria mellea (Vahl:Fr.) Kummer and its acceptance as type species of Armillaria (Fr.:Fr.) Staude. Due to recognition of different type species over the years and an extremely variable generic concept, at least 274 species and varieties have been placed in Armillaria (or in Armillariella Karst., its obligate synonym). Only about forty species belong in the genus Armillaria sensu stricto, while the rest can be placed in forty-three other modem genera. This study is based on original descriptions in the literature, as well as studies of type specimens and generic and species concepts by other authors. This publication consists of an alphabetical listing of all epithets used in Armillaria or Armillariella, with their basionyms, currently accepted names, and other obligate and facultative synonyms. -
Plant Life MagillS Encyclopedia of Science
MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE Volume 4 Sustainable Forestry–Zygomycetes Indexes Editor Bryan D. Ness, Ph.D. Pacific Union College, Department of Biology Project Editor Christina J. Moose Salem Press, Inc. Pasadena, California Hackensack, New Jersey Editor in Chief: Dawn P. Dawson Managing Editor: Christina J. Moose Photograph Editor: Philip Bader Manuscript Editor: Elizabeth Ferry Slocum Production Editor: Joyce I. Buchea Assistant Editor: Andrea E. Miller Page Design and Graphics: James Hutson Research Supervisor: Jeffry Jensen Layout: William Zimmerman Acquisitions Editor: Mark Rehn Illustrator: Kimberly L. Dawson Kurnizki Copyright © 2003, by Salem Press, Inc. All rights in this book are reserved. No part of this work may be used or reproduced in any manner what- soever or transmitted in any form or by any means, electronic or mechanical, including photocopy,recording, or any information storage and retrieval system, without written permission from the copyright owner except in the case of brief quotations embodied in critical articles and reviews. For information address the publisher, Salem Press, Inc., P.O. Box 50062, Pasadena, California 91115. Some of the updated and revised essays in this work originally appeared in Magill’s Survey of Science: Life Science (1991), Magill’s Survey of Science: Life Science, Supplement (1998), Natural Resources (1998), Encyclopedia of Genetics (1999), Encyclopedia of Environmental Issues (2000), World Geography (2001), and Earth Science (2001). ∞ The paper used in these volumes conforms to the American National Standard for Permanence of Paper for Printed Library Materials, Z39.48-1992 (R1997). Library of Congress Cataloging-in-Publication Data Magill’s encyclopedia of science : plant life / edited by Bryan D. -
Molecular Identification of Lepiota Acutesquamosa and L. Cristata
INTERNATIONAL JOURNAL OF AGRICULTURE & BIOLOGY ISSN Print: 1560–8530; ISSN Online: 1814–9596 12–1007/2013/15–2–313–318 http://www.fspublishers.org Full Length Article Molecular Identification of Lepiota acutesquamosa and L. cristata (Basidiomycota, Agaricales) Based on ITS-rDNA Barcoding from Himalayan Moist Temperate Forests of Pakistan Abdul Razaq1*, Abdul Nasir Khalid1 and Sobia Ilyas1 1Department of Botany, University of the Punjab, Lahore 54590, Pakistan *For correspondence: [email protected] Abstract Lepiota acutesquamosa and L. cristata (Basidiomycota, Agaricales) collected from Himalayan moist temperate forests of Pakistan were characterized using internal transcribed spacers (ITS) of rNDA, a fungal molecular marker. The ITS-rDNA of both species was analyzed using polymerase chain reaction (PCR) and DNA sequencing. The target region when amplified using universal fungal primers (ITS1F and ITS4) generated 650-650bp fragments. Consensus sequences of both species were submitted for initial blast analysis which revealed and confirmed the identification of both species by comparing the sequences of these respective species already present in the GenBank. Sequence of Pakistani collection of L. acutesquamosa matched 99% with sequences of same species (FJ998400) and Pakistani L. cristata matched 97% with its sequences (EU081956, U85327, AJ237628). Further, in phylogenetic analysis both species distinctly clustered with their respective groups. Morphological characters like shape, size and color of basidiomata, basidiospore size, basidial lengths, shape and size of cheilocystidia of both collections were measured and compared. Both these species have been described first time from Pakistan on morph-anatomical and molecular basis. © 2013 Friends Science Publishers Keywords: Internal transcribed spacers; Lepiotaceous fungi; Molecular marker; Phylogeny Introduction of lepiotaceous fungi (Vellinga, 2001, 2003, 2006). -
Isolation of the Symbiotic Fungus of Acromyrmex Pubescens and Phylogeny of Leucoagaricus Gongylophorus from Leaf-Cutting Ants
Saudi Journal of Biological Sciences (2016) xxx, xxx–xxx King Saud University Saudi Journal of Biological Sciences www.ksu.edu.sa www.sciencedirect.com ORIGINAL ARTICLE Isolation of the symbiotic fungus of Acromyrmex pubescens and phylogeny of Leucoagaricus gongylophorus from leaf-cutting ants G.A. Bich a,b,*, M.L. Castrillo a,b, L.L. Villalba b, P.D. Zapata b a Microbiology and Immunology Laboratory, Misiones National University, 1375, Mariano Moreno Ave., 3300 Posadas, Misiones, Argentina b Biotechnology Institute of Misiones ‘‘Marı´a Ebe Reca”, 12 Road, km 7, 5, 3300 Misiones, Argentina Received 7 August 2015; revised 21 April 2016; accepted 10 May 2016 KEYWORDS Abstract Leaf-cutting ants live in an obligate symbiosis with a Leucoagaricus species, a basid- ITS; iomycete that serves as a food source to the larvae and queen. The aim of this work was to isolate, Leaf-cutting ants; identify and complete the phylogenetic study of Leucoagaricus gongylophorus species of Acromyr- Leucoagaricus; mex pubescens. Macroscopic and microscopic features were used to identify the fungal symbiont Phylogeny of the ants. The ITS1-5.8S-ITS2 region was used as molecular marker for the molecular identifica- tion and to evaluate the phylogeny within the Leucoagaricus genus. One fungal symbiont associated with A. pubescens was isolated and identified as L. gongylophorus. The phylogeny of Leucoagaricus obtained using the ITS molecular marker revealed three well established monophyletic groups. It was possible to recognize one clade of Leucoagaricus associated with phylogenetically derived leaf-cutting ants (Acromyrmex and Atta). A second clade of free living forms of Leucoagaricus (non-cultivated), and a third clade of Leucoagaricus associated with phylogenetically basal genera of ants were also recognized. -
Lepiotoid Agaricaceae (Basidiomycota) from São Camilo State Park, Paraná State, Brazil
Mycosphere Doi 10.5943/mycosphere/3/6/11 Lepiotoid Agaricaceae (Basidiomycota) from São Camilo State Park, Paraná State, Brazil Ferreira AJ1* and Cortez VG1 1Universidade Federal do Paraná, Rua Pioneiro 2153, Jardim Dallas, 85950-000, Palotina, PR, Brazil Ferreira AJ, Cortez VG 2012 – Lepiotoid Agaricaceae (Basidiomycota) from São Camilo State Park, Paraná State, Brazil. Mycosphere 3(6), 962–976, Doi 10.5943 /mycosphere/3/6/11 A macromycete survey at the São Camilo State Park, a seasonal semideciduous forest fragment in Southern Brazil, State of Paraná, was undertaken. Six lepiotoid fungi were identified: Lepiota elaiophylla, Leucoagaricus lilaceus, L. rubrotinctus, Leucocoprinus cretaceus, Macrolepiota colombiana and Rugosospora pseudorubiginosa. Detailed descriptions and illustrations are presented for all species, as well as a brief discussion on their taxonomy and geographical distribution. Macrolepiota colombiana is reported for the first time in Brazil and Leucoagaricus rubrotinctus is a new record from the State of Paraná. Key words – Agaricales – Brazilian mycobiota – new records Article Information Received 30 October 2012 Accepted 14 November 2012 Published online 3 December 2012 *Corresponding author: Ana Júlia Ferreira – e-mail: [email protected] Introduction who visited and/or studied collections from the Agaricaceae Chevall. (Basidiomycota) country in the 19th century. More recently, comprises the impressive number of 1340 researchers have studied agaricoid diversity in species, classified in 85 agaricoid, gasteroid the Northeast (Wartchow et al. 2008), and secotioid genera (Kirk et al. 2008), and Southeast (Capelari & Gimenes 2004, grouped in ten clades (Vellinga 2004). The Albuquerque et al. 2010) and South (Rother & family is of great economic and medical Silveira 2008, 2009a, 2009b). -
Symbiotic Adaptations in the Fungal Cultivar of Leaf-Cutting Ants
ARTICLE Received 15 Apr 2014 | Accepted 24 Oct 2014 | Published 1 Dec 2014 DOI: 10.1038/ncomms6675 Symbiotic adaptations in the fungal cultivar of leaf-cutting ants Henrik H. De Fine Licht1,w, Jacobus J. Boomsma2 & Anders Tunlid1 Centuries of artificial selection have dramatically improved the yield of human agriculture; however, strong directional selection also occurs in natural symbiotic interactions. Fungus- growing attine ants cultivate basidiomycete fungi for food. One cultivar lineage has evolved inflated hyphal tips (gongylidia) that grow in bundles called staphylae, to specifically feed the ants. Here we show extensive regulation and molecular signals of adaptive evolution in gene trancripts associated with gongylidia biosynthesis, morphogenesis and enzymatic plant cell wall degradation in the leaf-cutting ant cultivar Leucoagaricus gongylophorus. Comparative analysis of staphylae growth morphology and transcriptome-wide expressional and nucleotide divergence indicate that gongylidia provide leaf-cutting ants with essential amino acids and plant-degrading enzymes, and that they may have done so for 20–25 million years without much evolutionary change. These molecular traits and signatures of selection imply that staphylae are highly advanced coevolutionary organs that play pivotal roles in the mutualism between leaf-cutting ants and their fungal cultivars. 1 Microbial Ecology Group, Department of Biology, Lund University, Ecology Building, SE-223 62 Lund, Sweden. 2 Centre for Social Evolution, Department of Biology, University of Copenhagen, Universitetsparken 15, DK-2100 Copenhagen, Denmark. w Present Address: Section for Organismal Biology, Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg, Denmark. Correspondence and requests for materials should be addressed to H.H.D.F.L. -
Amplicon-Based Sequencing of Soil Fungi from Wood Preservative Test Sites
ORIGINAL RESEARCH published: 18 October 2017 doi: 10.3389/fmicb.2017.01997 Amplicon-Based Sequencing of Soil Fungi from Wood Preservative Test Sites Grant T. Kirker 1*, Amy B. Bishell 1, Michelle A. Jusino 2, Jonathan M. Palmer 2, William J. Hickey 3 and Daniel L. Lindner 2 1 FPL, United States Department of Agriculture-Forest Service (USDA-FS), Durability and Wood Protection, Madison, WI, United States, 2 NRS, United States Department of Agriculture-Forest Service (USDA-FS), Center for Forest Mycology Research, Madison, WI, United States, 3 Department of Soil Science, University of Wisconsin-Madison, Madison, WI, United States Soil samples were collected from field sites in two AWPA (American Wood Protection Association) wood decay hazard zones in North America. Two field plots at each site were exposed to differing preservative chemistries via in-ground installations of treated wood stakes for approximately 50 years. The purpose of this study is to characterize soil fungal species and to determine if long term exposure to various wood preservatives impacts soil fungal community composition. Soil fungal communities were compared using amplicon-based DNA sequencing of the internal transcribed spacer 1 (ITS1) region of the rDNA array. Data show that soil fungal community composition differs significantly Edited by: Florence Abram, between the two sites and that long-term exposure to different preservative chemistries National University of Ireland Galway, is correlated with different species composition of soil fungi. However, chemical analyses Ireland using ICP-OES found levels of select residual preservative actives (copper, chromium and Reviewed by: Seung Gu Shin, arsenic) to be similar to naturally occurring levels in unexposed areas. -
The Macrofungi Checklist of Liguria (Italy): the Current Status of Surveys
Posted November 2008. Summary published in MYCOTAXON 105: 167–170. 2008. The macrofungi checklist of Liguria (Italy): the current status of surveys MIRCA ZOTTI1*, ALFREDO VIZZINI 2, MIDO TRAVERSO3, FABRIZIO BOCCARDO4, MARIO PAVARINO1 & MAURO GIORGIO MARIOTTI1 *[email protected] 1DIP.TE.RIS - Università di Genova - Polo Botanico “Hanbury”, Corso Dogali 1/M, I16136 Genova, Italy 2 MUT- Università di Torino, Dipartimento di Biologia Vegetale, Viale Mattioli 25, I10125 Torino, Italy 3Via San Marino 111/16, I16127 Genova, Italy 4Via F. Bettini 14/11, I16162 Genova, Italy Abstract— The paper is aimed at integrating and updating the first edition of the checklist of Ligurian macrofungi. Data are related to mycological researches carried out mainly in some holm-oak woods through last three years. The new taxa collected amount to 172: 15 of them belonging to Ascomycota and 157 to Basidiomycota. It should be highlighted that 12 taxa have been recorded for the first time in Italy and many species are considered rare or infrequent. Each taxa reported consists of the following items: Latin name, author, habitat, height, and the WGS-84 Global Position System (GPS) coordinates. This work, together with the original Ligurian checklist, represents a contribution to the national checklist. Key words—mycological flora, new reports Introduction Liguria represents a very interesting region from a mycological point of view: macrofungi, directly and not directly correlated to vegetation, are frequent, abundant and quite well distributed among the species. This topic is faced and discussed in Zotti & Orsino (2001). Observations prove an high level of fungal biodiversity (sometimes called “mycodiversity”) since Liguria, though covering only about 2% of the Italian territory, shows more than 36 % of all the species recorded in Italy.