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An Evaluation of Latent Dirichlet Allocation in the Context of Plant-Pollinator Networks by Liam Callaghan a Thesis Presented To
An evaluation of latent Dirichlet allocation in the context of plant-pollinator networks by Liam Callaghan A Thesis Presented to The University of Guelph In partial fulfilment of requirements for the degree of Master of Science in Mathematics and Statistics Guelph, Ontario, Canada c Liam Callaghan, December, 2012 ABSTRACT An evaluation of latent Dirichlet allocation in the context of plant-pollinator networks Liam Callaghan Advisors: University of Guelph, 2012 Dr. A. Ali Dr. G. Umphrey There may be several mechanisms that drive observed interactions between plants and pollinators in an ecosystem, many of which may involve trait matching or trait complementarity. Hence a model of insect species activity on plant species should be represented as a mixture of these linkage rules. Unfortunately, ecologists do not always know how many, or even which, traits are the main contributors to the observed interactions. This thesis proposes the Latent Dirichlet Allocation (LDA) model from artificial intelligence for modelling the observed interactions in an ecosys- tem as a finite mixture of (latent) interaction groups in which plant and pollinator pairs that share common linkage rules are placed in the same interaction group. Sev- eral model selection criteria are explored for estimating how many interaction groups best describe the observed interactions. This thesis also introduces a new model se- lection score called \penalized perplexity". The performance of the model selection criteria, and of LDA in general, are evaluated through a comprehensive simulation study that consider networks of various size along with varying levels of nesting and numbers of interaction groups. Results of the simulation study suggest that LDA works well on networks with mild-to-no nesting, but loses accuracy with increased nestedness. -
1.2 RP TVB ANNEXE ABT Especes Et Enjeux
La connaissance de la biodiversité sur l’Est Cantal un enjeu pour le développement du territoire ! Depuis avril 2017, le SYTEC s’est engagé dans une démarche d’Atlas de la Biodiversité Territoriale, avec l’objectif d’une part, de mieux connaitre la biodiversité du territoire et, d’autre part, d’intégrer les enjeux connus dans les démarches de planification notamment. Dans ce cadre, un ensemble de données naturalistes sur les territoires de l’Est Cantal ont pu être collectées auprès de nombreuses structures (Muséum National d’Histoire Naturelle, collectivités, associations, naturalistes professionnels…). Des inventaires sont également confiés chaque année par le SYTEC à des structures professionnelles pour compléter les connaissances sur des secteurs mal connus. En complément, des enquêtes participatives, qui rencontrent un vif succès, ont été lancées à destination du grand public, particulièrement des habitants des territoires. Ce travail de collecte a permis de réunir plus d’un million de données depuis le début de la démarche. A la fin de l’année 2018, ce sont 2505 espèces qui ont été répertoriés sur le territoire depuis 10 ans pour la faune (1017 espèces) et au cours de ces 15 dernières années pour la flore, les champignons et les algues (respectivement 1359, 31 et 98 espèces recensés). Parmi elles, 303 espèces sont considérées comme des espèces à enjeux en termes de préservation. Les inventaires se sont poursuivis en 2019 et continueront en 2020, permettant une mise à jour annuelle des connaissances de l’Est Cantal. Afin de partager -
A Phylogenomic Analysis of the Floral Transcriptomes of Sexually Deceptive and Rewarding European Orchids, Ophrys and Gymnadenia
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2019 A phylogenomic analysis of the floral transcriptomes of sexually deceptive and rewarding European orchids, Ophrys and Gymnadenia Pineiro Fernandez, Laura ; Byers, Kelsey J R P ; Cai, Jing ; Sedeek, Khalid E M ; Kellenberger, Roman T ; Russo, Alessia ; Qi, Weihong ; Aquino Fournier, Catharine ; Schlüter, Philipp M Abstract: The orchids (Orchidaceae) constitute one of the largest and most diverse families of flowering plants. They have evolved a great variety of adaptations to achieve pollination by a diverse group of pollinators. Many orchids reward their pollinators, typically with nectar, but the family is also well- known for employing deceptive pollination strategies in which there is no reward for the pollinator, in the most extreme case by mimicking sexual signals of pollinators. In the European flora, two examples of these different pollination strategies are the sexually deceptive genus Ophrys and the rewarding genus Gymnadenia, which differ in their level of pollinator specialization; Ophrys is typically pollinated by pseudo-copulation of males of a single insect species, whilst Gymnadenia attracts a broad range of floral visitors. Here, we present and describe the annotated floral transcriptome of Ophrys iricolor, an Andrena- pollinated representative of the genus Ophrys that is widespread throughout the Aegean. Furthermore, we present additional floral transcriptomes of both sexually deceptive and rewarding orchids, specifi- cally the deceptive Ophrys insectifera, Ophrys aymoninii, and an updated floral transcriptome of Ophrys sphegodes, as well as the floral transcriptomes of the rewarding orchids Gymnadenia conopsea, Gym- nadenia densiflora, Gymnadenia odoratissima, and Gymnadenia rhellicani (syn. -
Pdf of JHOS January 2011
JJoouurrnnaall of the HHAARRDDYY OORRCCHHIIDD SSOOCCIIEETTYY Vol. 8 No. 1 (59) January 2011 JOURNAL of the HARDY ORCHID SOCIETY Vol. 8 No. 1 (59) January 2011 The Hardy Orchid Society Our aim is to promote interest in the study of Native European Orchids and those from similar temperate climates throughout the world. We cover such varied aspects as field study, cultivation and propagation, photography, taxonomy and systematics, and practical conservation. We welcome articles relating to any of these subjects, which will be considered for publication by the editorial committee. Please send your submissions to the Editor, and please structure your text according to the “Advice to Authors” (see website www.hardyorchidsociety.org.uk , January 2004 Journal, Members’ Handbook or contact the Editor). Views expressed in journal arti - cles are those of their author(s) and may not reflect those of HOS. The Hardy Orchid Society Committee President: Prof. Richard Bateman, Jodrell Laboratory, Royal Botanic Gardens Kew, Richmond, Surrey, TW9 3DS Chairman: Celia Wright, The Windmill, Vennington, Westbury, Shrewsbury, Shropshire, SY5 9RG [email protected] Vice-Chairman: David Hughes, Linmoor Cottage, Highwood, Ringwood, Hants., BH24 3LE [email protected] Secretary: Alan Leck, 61 Fraser Close, Deeping St. James, Peterborough, PE6 8QL [email protected] Treasurer: John Wallington, 17, Springbank, Eversley Park Road, London, N21 1JH [email protected] Membership Secretary: Moira Tarrant, Bumbys, Fox Road, Mashbury, Chelmsford, -
Wildlife Report Review of 2019
WILDLIFE REPORT REVIEW OF 2019 TOP – EARLY BUMBLE BEE BOTTOM – SWALLOWTAIL MOTH Introduction The end of 2019 is the appropriate moment to look closely at how this year has been for wildlife at Eric wall LTD. This will inform the business about what the site is achieving towards meeting the objectives of the LEAF organisation. There are highlights and moderate successes as well as some disappointments. In order to assess the situation a suite of indicators are used. The specific indicators are birds, butterflies, moths and orchids. All these groups of species are regularly monitored; the data is collected and stored. Information about other species including reptiles, mammals and other insects; especially bees is also collected as anecdotal observations. In excess of 5% of the nursery land holding can currently be managed for the benefit of wildlife and Rowan Tree planted in 2015 the quality of this management will also be examined in this report. The United Kingdom government’s Joint Nature Conservation Committee (JNCC) latest State of Nature report shows that the trends for wildlife numbers and distribution are more likely to be declining than expanding. For a business like Eric Wall LTD the fact that many rare and specialised species are declining is not relevant, these species have never been present here. The important statistics concern the general abundance of the commoner species. The report highlights that general species abundance has declined by 13% since the 1970s. It is in this area that this business can do things that can help to arrest this decline; or equally carry out actions that reinforce this trend. -
List of UK BAP Priority Terrestrial Invertebrate Species (2007)
UK Biodiversity Action Plan List of UK BAP Priority Terrestrial Invertebrate Species (2007) For more information about the UK Biodiversity Action Plan (UK BAP) visit https://jncc.gov.uk/our-work/uk-bap/ List of UK BAP Priority Terrestrial Invertebrate Species (2007) A list of the UK BAP priority terrestrial invertebrate species, divided by taxonomic group into: Insects, Arachnids, Molluscs and Other invertebrates (Crustaceans, Worms, Cnidaria, Bryozoans, Millipedes, Centipedes), is provided in the tables below. The list was created between 1995 and 1999, and subsequently updated in response to the Species and Habitats Review Report published in 2007. The table also provides details of the species' occurrences in the four UK countries, and describes whether the species was an 'original' species (on the original list created between 1995 and 1999), or was added following the 2007 review. All original species were provided with Species Action Plans (SAPs), species statements, or are included within grouped plans or statements, whereas there are no published plans for the species added in 2007. Scientific names and commonly used synonyms derive from the Nameserver facility of the UK Species Dictionary, which is managed by the Natural History Museum. Insects Scientific name Common Taxon England Scotland Wales Northern Original UK name Ireland BAP species? Acosmetia caliginosa Reddish Buff moth Y N Yes – SAP Acronicta psi Grey Dagger moth Y Y Y Y Acronicta rumicis Knot Grass moth Y Y N Y Adscita statices The Forester moth Y Y Y Y Aeshna isosceles -
Species List 02/11/2017
1 of 27 Kelvingrove Park - species list 02/11/2017 Group Taxon Common Name Earliest Latest Records acarine Hydracarina 2004 2004 1 amphibian Bufo bufo Common Toad 2014 2014 2 amphibian Lissotriton helveticus Palmate Newt 2006 2006 1 amphibian Lissotriton vulgaris Smooth Newt 1997 1997 1 amphibian Rana temporaria Common Frog 2009 2017 6 annelid Alboglossiphonia heteroclita 2003 2004 2 annelid Erpobdella testacea 2003 2003 1 annelid Glossiphonia complanata 2003 2003 1 annelid Helobdella stagnalis 2003 2014 3 annelid Lumbricus terrestris Common Earthworm 1996 2000 1 annelid Naididae 2004 2004 1 annelid Tubificidae Tubificid Worm Sp. 2003 2004 2 bird Acanthis flammea Common (Mealy) Redpoll 1991 1991 1 bird Accipiter nisus Sparrowhawk 1983 2008 7 bird Aegithalos caudatus Long-tailed Tit 1991 2017 16 bird Aix galericulata Mandarin Duck 1969 1969 1 bird Alcedo atthis Kingfisher 1988 2017 27 bird Anas penelope Wigeon 1994 1994 1 bird Anas platyrhynchos Mallard 1968 2014 246 bird Anser anser Greylag Goose 1973 1973 1 bird Apus apus Swift 2008 2014 4 bird Ardea cinerea Grey Heron 1991 2014 28 bird Aythya ferina Pochard 1939 1994 10 bird Aythya fuligula Tufted Duck 1992 2004 16 bird Bucephala clangula Goldeneye 1991 2006 59 bird Carduelis carduelis Goldfinch 1998 2014 12 bird Certhia familiaris Treecreeper 1995 2017 11 bird Chloris chloris Greenfinch 1988 2016 7 bird Chroicocephalus ridibundus Black-headed Gull 1961 2014 16 bird Cinclus cinclus Dipper 1991 2014 8 bird Columba livia Feral Pigeon 1958 2015 21 bird Columba oenas Stock Dove 2014 2015 2 bird Columba palumbus Woodpigeon 2014 2014 7 bird Corvus corone Carrion Crow 2014 2014 1 2 of 27 Kelvingrove Park - species list 02/11/2017 Group Taxon Common Name Earliest Latest Records bird Corvus corone agg. -
Liste Des Noms D'espèces D'orchidées De France Métropolitaine Utilisable Sur Le Site Orchisauvage
Date de mise à jour 16-avril-18 Liste des noms d'espèces d'orchidées de France métropolitaine utilisable sur le site Orchisauvage Il existe de nombreux synonymes de noms d'espèces utilisés par les botanistes et orchidophiles avec une évolution rapide. Afin de limiter les perturbations que cela crée pour les non spécialistes, le site Orchisauvage permet d'utiliser les synonymes les plus fréquents. En cas d'utilisation d'un synonyme, le nom retenu par la SFO, surligné en vert, sera celui affiché pour les observations accompagné d'un astérisque pour le repérer. Toutefois, le nom saisi sera toujours gardé dans la base de données. En plus des cartes de présence nationale pour chaque espèce, 17 cartes supplémentaires de regroupement d'espèces proches sont disponibles. Il s'agit des espèces indiquées "au sens large" surlignées en jaune. Nom d'orchidée pouvant être Nom valide ou retenu pour les Cartes supplémentaires de Nom vernaculaire utilisé en saisie restitutions regroupement d'espèces Aceras anthropophorum Orchis anthropophora Orchis homme pendu Anacamptis champagneuxii Anacamptis champagneuxii Orchis de Champagneux Orchis bouffon au sens large Anacamptis collina Anacamptis collina Orchis des collines Anacamptis coriophora Anacamptis coriophora Orchis punaise Orchis punaise au sens large Anacamptis indet. coriophora Anacamptis indéterminé de l’espèce coriophora Orchis punaise indéterminé Orchis punaise au sens large Anacamptis coriophora subsp. fragrans Anacamptis coriophora subsp. fragrans Orchis parfumé Orchis punaise au sens large Anacamptis coriophora subsp. martrinii Anacamptis coriophora subsp. martrinii Orchis de Martrin Orchis punaise au sens large Anacamptis laxiflora Anacamptis laxiflora Orchis à fleurs lâches Anacamptis longicornu Anacamptis longicornu Orchis à long éperon Anacamptis morio Anacamptis morio Orchis bouffon Orchis bouffon au sens large Anacamptis indet. -
The Norfolk &. Norwich
TRANSACTIONS OF THE NORFOLK &. NORWICH NATURALISTS' SOCIETY Edited by E. A. Ellis Assistant Editor: P. W. Lambley Vol. 26 Part 1 MAY 1982 TRANSACTIONS OF THE NORFOLK AND NORWICH NATURALISTS SOCIETY Volume 26, Part 1 (May 1982) Editor Dr E. A. Ellis Assistant Editor P. W. Lambley ISSN 0375 7226 OFFICERS OF THE SOCIETY 1981-82 President— Dr C. P. Petch President Elect: Mr Bruce Robinson Castle Museum, Norwich Vice-Presidents: P. R. Banham, A. Bull, K. B. Clarke, K. C. Durrant, E. A. Ellis, R. Miss C. Gurney, Jones, M. J. Seago, J. A. Steers, E. L. Swann, F. J. Taylor-Page General Secretary: R. E. Baker 25 Southern Reach, Mulbarton, NR14 8BU. Tel. Mulbarton 70609 Assistant Secretary: (Membership and Publications) Miss J. Wakefield Post Office Lane, Saxthorpe, NR11 7BL Assistant Secretary: (Minutes) K. B. Clarke Excursion Secretary: Mrs J. Robinson 5 Southern Reach, Mulbarton, NR14 8BU. Tel. Mulbarton 70576 Treasurer: D. A. Dorling St Edmundsbury, 6 New Road, Hethersett. Tel. Norwich 810318 Assistant Treasurer: R. Robinson Editor: E. A. Ellis Assistant Editor: P. W. Lambley Auditor: J. E. Timbers Committee: Mr M. Baker, Miss A. Brewster, Dr A. Davy (University Representative), J. Fenton, C. Goodwin, R. Hancy, R. Hobbs (Norfolk Naturalists' Trust), P. W. Lambley (Museum Representative), Dr R. Leaney, R. P. Libbey, M. Taylor, Dr G. D. Watts, P. Wright (Nature Conservancy Representative). ORGANISERS OF PRINCIPAL SPECIALIST GROUPS Birds (Editor of the Report): M. J. Seago, 33 Acacia Road, Thorpe Mammals (Editor of the Report): R. Hancy, 124 Fakenham Road, Taverham, NR8 6QH Plants: P. W. Lambley, and E. -
Moth Surveys 2020
Table of Contents Introduction 2 Visit 1 – 20th May, 2020 2 Visit 2 – 15th June, 2020 3 Visit 3 – 14th July, 2020 4 Visit 4 – 8th August, 2020 5 Visit 5 – 8th September, 2020 6 Visit 6 – 10th November, 2020 7 Summary 8 Acknowledgements 8 Appendix I – Recording Details 8 Appendix II – The Complete List 2020 8 Appendix III – National Status & Foodplants 15 Appendix IV – Other Wildlife Recorded During Survey 21 Some Photos From Sun Rising 2020 22 Cover Photo: 2064 (72.024) Ruby Tiger (Phragmatobia fuliginosa) 8th September, 2020 All photos in this report taken at Sun Rising by A. Prior © 2020 1 Sun Rising NBG Moth Surveys 2020 Introduction After the atrocious weather experienced going back to the last couple of months of 2019 it seems miraculous that six visits were made to Sun Rising during 2020. Throw in a frustrating global virus and it is even more so! Most were arranged at very short notice to take advantage of whatever decent weather was on offer. There were a couple of breezy nights, but they were mild enough to make them worthwhile and all were productive with additions of new species to further lengthen the site list. Visit 1 – 20th May, 2020 The weather finally relented towards the end of May and after all that had gone on earlier in the year it was decided that Martin Kennard and I should use this as a “test” night to see if we could carry on moth recording safely. Neither of us thought there should be any problem with that as by the very nature of moth recording we are widely separated. -
Database of Irish Lepidoptera. 1 - Macrohabitats, Microsites and Traits of Noctuidae and Butterflies
Database of Irish Lepidoptera. 1 - Macrohabitats, microsites and traits of Noctuidae and butterflies Irish Wildlife Manuals No. 35 Database of Irish Lepidoptera. 1 - Macrohabitats, microsites and traits of Noctuidae and butterflies Ken G.M. Bond and Tom Gittings Department of Zoology, Ecology and Plant Science University College Cork Citation: Bond, K.G.M. and Gittings, T. (2008) Database of Irish Lepidoptera. 1 - Macrohabitats, microsites and traits of Noctuidae and butterflies. Irish Wildlife Manual s, No. 35. National Parks and Wildlife Service, Department of the Environment, Heritage and Local Government, Dublin, Ireland. Cover photo: Merveille du Jour ( Dichonia aprilina ) © Veronica French Irish Wildlife Manuals Series Editors: F. Marnell & N. Kingston © National Parks and Wildlife Service 2008 ISSN 1393 – 6670 Database of Irish Lepidoptera ____________________________ CONTENTS CONTENTS ........................................................................................................................................................1 ACKNOWLEDGEMENTS ....................................................................................................................................1 INTRODUCTION ................................................................................................................................................2 The concept of the database.....................................................................................................................2 The structure of the database...................................................................................................................2 -
Xylobionte Käfergemeinschaften (Insecta: Coleoptera)
©Naturwissenschaftlicher Verein für Kärnten, Austria, download unter www.zobodat.at Carinthia II n 205./125. Jahrgang n Seiten 439–502 n Klagenfurt 2015 439 Xylobionte Käfergemeinschaften (Insecta: Coleoptera) im Bergsturzgebiet des Dobratsch (Schütt, Kärnten) Von Sandra AURENHAMMER, Christian KOMPOscH, Erwin HOLZER, Carolus HOLZscHUH & Werner E. HOLZINGER Zusammenfassung Schlüsselwörter Die Schütt an der Südflanke des Dobratsch (Villacher Alpe, Gailtaler Alpen, Villacher Alpe, Kärnten, Österreich) stellt mit einer Ausdehnung von 24 km² eines der größten dealpi Totholzkäfer, nen Bergsturzgebiete der Ostalpen dar und ist österreichweit ein Zentrum der Biodi Arteninventar, versität. Auf Basis umfassender aktueller Freilanderhebungen und unter Einbeziehung Biodiversität, diverser historischer Datenquellen wurde ein Arteninventar xylobionter Käfer erstellt. Collection Herrmann, Die aktuellen Kartierungen erfolgten schwerpunktmäßig in der Vegetations Buprestis splendens, periode 2012 in den Natura2000gebieten AT2112000 „Villacher Alpe (Dobratsch)“ Gnathotrichus und AT2120000 „Schüttgraschelitzen“ mit 15 Kroneneklektoren (Kreuzfensterfallen), materiarius, Besammeln durch Handfang, Klopfschirm, Kescher und Bodensieb sowie durch das Acanthocinus Eintragen von Totholz. henschi, In Summe wurden in der Schütt 536 Käferspezies – darunter 320 xylobionte – Kiefernblockwald, aus 65 Familien nachgewiesen. Das entspricht knapp einem Fünftel des heimischen Urwaldreliktarten, Artenspektrums an Totholzkäfern. Im Zuge der aktuellen Freilanderhebungen