Heterocyclic Compounds
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Heterocyclic Compounds with Biological Meaning
Heterocyclic compounds with biological meaning 1 Heterocyclic compounds Cyclic, organic compounds which besides carbon atoms have one or more heteroatom (other elements than C). Heterocyclic atoms: – nitrogen, N – sulphur, S – oxygen, O – phosphorus, P – barium, Ba – zinc, Zn – silicon, Si. 2 Heterocyclic compounds From the biological point of view, the most important are heterocyclic compounds with 5- and 6-membered rings, containing: S, N, O. Most of the heterocyclic compounds have their common names. Substituent’s position in the ring is described by : – number – position of heteroatom – no. 1 – Greek letter – describes carbon atom the closest to heteroatom as a, then β and γ, respectively. 3 Heterocyclic compounds Heterocyclic compounds are: • widespread in nature • biologically active • some of them are toxic (e.g. coniine, coumarin and derivatives). Occurrence in: • natural dyes - heme, chlorophyll • alkaloids – atropine and nicotine • amino acids such as tryptophan and histidine • enzymes, nucleoproteins, antibiotics • vitamins • many synthetic pharmaceuticals. 4 Heterocyclic compounds Aromatic character of heteroatom-containing ring comes from aromatic sextet which consists of: • „not bound” electron pairs of heteroatoms • four electrons π from carbon atoms Pyrrole Furane Thiophen 5 5- membered ring heterocyclic compounds with one heteroatom 5-membered rings: • contain mostly oxygen, sulphur and nitrogen • are flat • are aromatic 6 5- membered ring heterocyclic compounds with two heteroatoms oxazole imidazole thiazole pyrazole 7 5- membered ring heterocyclic compounds With one heteroatom With two heteroatoms Condensation products with benzene 8 Pyrrole and derivatives • Pyrrole derivatives: • pyrroline • pyrrolidone • proline, • Hydroksyproline. • Condensation’s products of pyrrole with benzene: – indole, – tryptophan, – serotonin. • Condensation’s products of pyrrole with formaldehyde: – heme – hemoglobin – billirubin – porphyrins – Biliverdin. -
Tetrazinebox: a Structurally Transformative Toolbox Qing-Hui Guo, Jiawang Zhou, Haochuan Mao, Yunyan Qiu, Minh T
pubs.acs.org/JACS Article TetrazineBox: A Structurally Transformative Toolbox Qing-Hui Guo, Jiawang Zhou, Haochuan Mao, Yunyan Qiu, Minh T. Nguyen, Yuanning Feng, Jiaqi Liang, Dengke Shen, Penghao Li, Zhichang Liu, Michael R. Wasielewski, and J. Fraser Stoddart* Cite This: J. Am. Chem. Soc. 2020, 142, 5419−5428 Read Online ACCESS Metrics & More Article Recommendations *sı Supporting Information ABSTRACT: Synthetic macrocycles capable of undergoing allosteric regulation by responding to versatile external stimuli are the subject of increasing attention in supramolecular science. Herein, we report a structurally transformative tetracationic cyclophane containing two 3,6-bis(4-pyridyl)-l,2,4,5-tetrazine (4-bptz) units, which are linked together by two p-xylylene bridges. The cyclophane, which possesses modular redox states and structural post-modifications, can undergo two reversibly consecutive two-electron reductions, affording first its bisradical dicationic counterpart, and then subsequently the fully reduced species. Furthermore, one single-parent cyclophane can afford effectively three other new analogs through box- to-box cascade transformations, taking advantage of either reductions or an inverse electron-demand Diels−Alder (IEDDA) reaction. While all four new tetracationic cyclophanes adopt rigid and symmetric box-like conformations, their geometries in relation to size, shape, electronic properties, and binding affinities toward polycyclic aromatic hydrocarbons can be readily regulated. This structurally transformative tetracationic cyclophane performs a variety of new tasks as a result of structural post-modifications, thus serving as a toolbox for probing the radical properties and generating rapidly a range of structurally diverse cyclophanes by efficient divergent syntheses. This research lays a solid foundation for the introduction of the structurally transformative tetracationic cyclophane into the realm of mechanically interlocked molecules and will provide a toolbox to construct and operate intelligent molecular machines. -
Tetrazine Ligand
Synthesis and photochemical studies of Cu(I) complex with 1,4-bis(3,5- dimethylpyrazol-1yl)tetrazine ligand Y. K Gun’ko,* H. Hayden Department of Chemistry, Trinity College Dublin, Dublin 2, Ireland 1. INTRODUCTION Nitrogen-rich compounds are unique very reactive substances which have high heats of formation. Pyridine is one of the most well known aromatic cycles where a CH is replaced by a nitrogen atom, but the pyridine ring is only one member of the azine heterocycles, in which one or more CH group of benzene is replaced by π-accepting and σ-donating nitrogen atoms, proceeding from diazines (pyridazines, pyrazine), triazines and up to tetrazines. Tetrazines are typical representatives of nitrogen rich heterocyclic compounds. They have a range of applications such as explosives,1 propellants and pyrotechnic ingredients,2 biological agents for recognition of anion3 and precursors for drug development. 4,5 Self-assembly of metal cations with nitrogen heterocyclic bridging ligands is a central theme in supramolecular chemistry aimed at developing assemblies of electronically coupled metal centres.6 These ligands can be used to bridge metal centres in various ways, allowing electron and charge transfer processes in the structures. 1,2,4,5-Tetrazines also have very interesting redox-behaviour, which are similar to quinones.7 The very low-lying π* orbital localised at the four nitrogen atoms in tetrazines might allow intense low-energy charge valence transfer absorptions, electrical conductivity of coordination polymers, unusual stability -
Non-Empirical Calculations on the Electronic Structure of Olefins and Aromatics
NON-EMPIRICAL CALCULATIONS ON THE ELECTRONIC STRUCTURE OF OLEFINS AND AROMATICS by Robert H. Findlay, B.Sc. Thesis presented for the Degree of Doctor of philosophy University of Edinburgh December 1973 U N /),, cb CIV 3 ACKNOWLEDGEMENTS I Wish to express my gratitude to Dr. M.H. Palmer for his advice and encouragement during this period of study. I should also like to thank Professor J.I.G. Cadogan and Professor N. Campbell for the provision of facilities, and the Carnegie Institute for the Universities of Scotland for a Research Scholarship. SUMMARY Non-empirical, self-consistent field, molecular orbital calculations, with the atomic orbitals represented by linear combinations of Gaussian-type functions have been carried out on the ground state electronic structures of some nitrogen-, oxygen-, sulphur- and phosphorus-containing heterocycles. Some olefins and olefin derivatives have also been studied. Calculated values of properties have been compared with the appropriate experimental quantities, and in most cases the agreement is good, with linear relationships being established; these are found to have very small standard deviations. Extensions to molecules for which there is no experimental data have been made. In many cases it has been iôtrnd possible to relate the molecular orbitals to the simplest member of a series, or to the hydrocarbon analogue. Predictions of the preferred geometry of selected molecules have been made; these have been used to predict inversion barriers and reaction mechanisms. / / The extent of d-orbital participation in molecules containing second row atoms has been investigated and found to be of trivial importance except in molecules containing high valence states of the second row atoms. -
Synthesis and Evaluation of a Series of 1,2,4,5-Tetrazines for Bioorthogonal Conjugation
Synthesis and Evaluation of a Series of 1,2,4,5-Tetrazines for Bioorthogonal Conjugation The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Karver, Mark R., Ralph Weissleder, and Scott A. Hilderbrand. 2011. “Synthesis and Evaluation of a Series of 1,2,4,5-Tetrazines for Bioorthogonal Conjugation.” Bioconjugate Chemistry 22 (11): 2263– 70. https://doi.org/10.1021/bc200295y. Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:41384387 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA NIH Public Access Author Manuscript Bioconjug Chem. Author manuscript; available in PMC 2012 November 16. NIH-PA Author ManuscriptPublished NIH-PA Author Manuscript in final edited NIH-PA Author Manuscript form as: Bioconjug Chem. 2011 November 16; 22(11): 2263±2270. doi:10.1021/bc200295y. Synthesis and Evaluation of a Series of 1,2,4,5-Tetrazines for Bioorthogonal Conjugation Mark R. Karver, Ralph Weissleder, and Scott A. Hilderbrand* Center for Systems Biology, Massachusetts General Hospital and Harvard Medical School, 185 Cambridge St. Suite 5.210, Boston, MA 02114 Abstract 1,2,4,5-Tetrazines have been established as effective dienes for inverse electron demand [4 + 2] Diels-Alder cycloaddition reactions with strained alkenes for over fifty years. Recently, this reaction pair combination has been applied to bioorthogonal labeling and cell detection applications; however, to date there has been no detailed examination and optimization of tetrazines for use in biological experiments. -
Heterocyclic Chemistry at a Glance Other Titles Available in the Chemistry at a Glance Series
Heterocyclic Chemistry at a Glance Other Titles Available in the Chemistry at a Glance series: Steroid Chemistry at a Glance Daniel Lednicer ISBN: 978-0-470-66084-3 Chemical Thermodynamics at a Glance H. Donald Brooke Jenkins ISBN: 978-1-4051-3997-7 Environmental Chemistry at a Glance Ian Pulford, Hugh Flowers ISBN: 978-1-4051-3532-0 Natural Product Chemistry at a Glance Stephen P. Stanforth ISBN: 978-1-4051-4562-6 The Periodic Table at a Glance Mike Beckett, Andy Platt ISBN: 978-1-4051-3299-2 Chemical Calculations at a Glance Paul Yates ISBN: 978-1-4051-1871-2 Organic Chemistry at a Glance Laurence M. Harwood, John E. McKendrick, Roger Whitehead ISBN: 978-0-86542-782-2 Stereochemistry at a Glance Jason Eames, Josephine M Peach ISBN: 978-0-632-05375-9 Reaction Mechanisms at a Glance: A Stepwise Approach to Problem-Solving in Organic Chemistry Mark G. Moloney ISBN: 978-0-632-05002-4 Heterocyclic Chemistry at a Glance Second Edition JOHN A. JOULE The School of Chemistry, The University of Manchester, UK KEITH MILLS Independent Consultant, UK This edition fi rst published 2013 © 2013 John Wiley & Sons, Ltd Registered offi ce John Wiley & Sons Ltd, The Atrium, Southern Gate, Chichester, West Sussex, PO19 8SQ, United Kingdom For details of our global editorial offi ces, for customer services and for information about how to apply for permission to reuse the copyright material in this book please see our website at www.wiley.com. The right of the author to be identifi ed as the author of this work has been asserted in accordance with the Copyright, Designs and Patents Act 1988. -
Interactions and Positive Electrostatic Potentials of N-Heterocycles Arise from the Cite This: Chem
ChemComm View Article Online COMMUNICATION View Journal | View Issue Anion–p interactions and positive electrostatic potentials of N-heterocycles arise from the Cite this: Chem. Commun., 2014, 50, 11118 positions of the nuclei, not changes in the Received 9th July 2014, p-electron distribution† Accepted 5th August 2014 DOI: 10.1039/c4cc05304d Steven E. Wheeler* and Jacob W. G. Bloom www.rsc.org/chemcomm We show that the positive electrostatic potentials and molecular the molecule. As a result, a positive Qzz value can indicate the quadrupole moments characteristic of p-acidic azines, which depletion of electron density above the ring centre (e.g., underlie the ability of these rings to bind anions above their centres, reduction of the p-electron density) or the movement of nuclear arise from the position of nuclear charges, not changes in the charge towards the ring centre. Similarly, a positive ESP above p-electron density distribution. an aromatic ring can arise from changes in either the electronic or nuclear charge distributions.7 These distinctions are rarely Anion–p interactions1 are attractive non-covalent interactions made in discussions of anion–p interactions,1,2 which focus between anions and the faces of p-acidic rings.2 They often almost exclusively on the concepts of p-acidity and p-electron- involve azabenzenes (azines) such as s-triazine and s-tetrazine, deficiency. and have emerged as powerful tools for anion binding, recogni- Previously, Wheeler and Houk showed8 that substituent- tion and transport, and even catalysis.3 Despite rapidly-growing induced changes in the ESPs of substituted arenes are domi- interest in these non-covalent interactions, there is a dearth of nated by through-space effects, not changes in the p-electron rigorous explanations of their origin.4 Most authors2g,h ascribe density. -
Haloselectivity of Heterocycles Will Gutekunst
Baran Group Meeting Haloselectivity of Heterocycles Will Gutekunst Background SN(ANRORC) Addition of Nuclophile, Ring Opening, Ring Closure Polysubstituted heterocycles represent some of the most important compounds in the realm of pharmaceutical and material sciences. New and more efficient ways to selectively produce these Br Br molecules are of great importance and one approach is though the use of polyhalo heterocycles. Br NaNH2 N N Consider: Ar N 3 Ar2 NH3(l), 90% NH2 3 Halogenations H NH2 H N CO2Me Ar H 3 Suzuki Couplings 1 N CO2Me - Br H Ar 3 Ar2 1 Triple Halogenation NH2 NH CO Me N N 2 Ar1 H 1 Triple Suzuki Coupling N CO2Me N NH H NH2 Ar H 3 Ar2 1 Triple C-H activation? CO Me N 2 Ar1 H N CO2Me Cross Coupling H Virtually all types of cross coupling have been utilized in regioselective cross coupling reactions: Nucleophilic Substitution Kumada, Negishi, Sonogashira, Stille, Suzuki, Hiyama, etc. SNAr or SN(AE) In all of these examples, the oxidative addition of the metal to the heterocycle is the selectivity determining steps and is frequently considered to be irreversible. This addition highly resembles a nucleophilic substitution and it frequently follows similar regioselectivities in traditional S Ar reactions. Nu N The regioselectivity of cross coupling reaction in polyhalo heterocycles do not always follow the BDE's Nu of the corresponding C-X bonds. N X N X N Nu 2nd 2nd Meisenheimer Complex 1st Br Br 88.9 83.2 S (EA) Br 88.9 N 87.3 Br O O via: st OMe 1 Br NaNH , t-BuONa 2 N N pyrrolidine + Merlic and Houk have determined that the oxidative addition in palladium catalyzed cross coupling N N THF, 40ºC N reactions is determined by the distortion energy of the C-X bond (related to BDE) and the interaction of N the LUMO of the heterocycle to the HOMO of the Pd species. -
October 2004 CLASSIFICATION DEFINITIONS 544 - 1
October 2004 CLASSIFICATION DEFINITIONS 544 - 1 CLASS 544, ORGANIC COMPOUNDS -- PART OF THE CLASS 532-570 SERIES 9 This subclass is indented under subclass 8. Compounds wherein the thiadiazine ring is one of the cyclos of a polycyclo ring system. SUBCLASSES 10 This subclass is indented under subclass 9. 1 This subclass is indented under subclass 1. Compounds wherein the polycyclo ring system Compounds under Class 540, ... which contain consists of two rings, one of which is the thia- a six-membered hetero ring having two or diazine ring. more ring hetero atoms of which at least one is nitrogen. 11 This subclass is indented under subclass 10. Compounds wherein the bicyclo ring system SEE OR SEARCH CLASS: consists of the thiadiazine ring and a benzene 588, Hazardous or Toxic Waste Destruc- ring. tion or Containment, appropriate sub- classes for the chemical destruction of 12 This subclass is indented under subclass 11. hazardous or toxic waste. Compounds wherein the sulfur atom is in the 1- position and the nitrogen atoms are in the 2- 2 This subclass is indented under subclass 1. and 4-positions of the six-membered hetero Compounds wherein the six- membered hetero ring. ring includes at least one atom each of oxygen, sulfur, nitrogen and carbon and contains no (1) Note. An example of a structure pro- other elements as ring members. vided for herein is: 3 This subclass is indented under subclass 1. Compounds wherein the six- membered hetero ring includes at least one atom each of sulfur, nitrogen and carbon and contains no other ele- ments as ring members. -
E4032922d5230c3b19df5adaef1
Borneo Journal of Resource Science and Technology (2017) 7(2): 60-75 REVIEW PAPER Review on the Synthesis of Pyrazine and Its Derivatives KOK TONG ONG1, ZHI-QIANG LIU2 & MENG GUAN TAY*1 1Faculty of Resource Science and Technology, Universiti Malaysia Sarawak, 94300 Kota Samarahan, Sarawak, Malaysia; 2State Key Lab of Crystal Materials, Shandong University, Jinan, 250100, China. *Corresponding author: [email protected] ABSTRACT Pyrazine is a kind of natural product which can be found in plants, animals, insects, marine organisms and microorganisms. The main function of pyrazine in living organisms is used as flavor of the raw foods. Pyrazine and its derivatives were also produced in industries mainly for fragrance, flavor and pharmaceutical applications. This review describes the historical development of pyrazine including the discovery and synthesis, to the recent synthetic approach of pyrazinium. In general, six synthetic approaches namely condensation reaction, ring closure, metal catalysis, green reaction, Maillard reaction and acid catalyst on N-substitution have been reviewed in this paper. The first five approaches are mainly aimed for the substitution at 2, 3, 5 and 6 positions in pyrazine ring, whereas the last approach is specifically for 1 and 4 positions in pyrazine. Keywords: Diazine, pyrazine, and Maillard reaction INTRODUCTION of nitrogen atoms that is positioned at para position (Sato, 2014). The specific dissociation Diazine is described as a compound with constant for pyrazine are pK = 0.65 and pK = - monocyclic aromatic ring that contains two a1 a2 5.78 (Dolezal & Zitko, 2015). nitrogen atoms with a molecular formula of C4H4N2. The three isomers of diazine are pyridazine, pyrimidine and pyrazine (Figure 1). -
Heteroatom-Containing Carbon Nanostructures As Oxygen Reduction Electrocatalysts for PEM and Direct Methanol Fuel Cells
Heteroatom-containing Carbon Nanostructures as Oxygen Reduction Electrocatalysts for PEM and Direct Methanol Fuel Cells Dissertation Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Dieter von Deak, B.S.ChE Graduate Program in Chemical Engineering * * * * The Ohio State University 2011 Dissertation Committee: Professor Umit S. Ozkan, Advisor Professor David Wood Professor James Rathman Copyright by Dieter von Deak 2011 2 ABSTRACT The main goal of this work was to undertake a fundamental investigation of precious metal-free carbon catalysts nano-structure modification to enable their use as oxygen reduction reaction (ORR) catalysts in proton exchange membrane (PEM) fuel cells. The sluggish ORR is accelerated by fiscally prohibitive loadings of Pt catalyst. The expense and availability of platinum motivate the development of non-precious metal carbon-nitroge-based ORR catalysts (CNx). The project targets the nature of oxygen reduction reaction active sites and exploring ways to create these sites by molecular tailoring of carbon nano-structures. CNx grown with phosphorous had a significant increase in the ORR active site density. CNx catalyst growth media was prepared by acetonitrile deposition over a Fe and P impregnated MgO. Rotating Ring Disk Electrode (RRDE) Activity and selectivity showed a significant increase in oxygen reduction current with CNx grown with less than a 1:1 molar ratio of P:Fe. Selectivity for the full reduction of dioxygen to water trended with increasing ORR activity for phosphorous grown CNx catalysts. Phosphorus growth altered the morphology of carbon-nitride graphite formed during pyrolysis. -
Selective N1/N4 1,4-Cycloaddition of 1,2,4,5-Tetrazines Enabled by Solvent Hydrogen Bonding Zixi Zhu, Christopher M
pubs.acs.org/JACS Article Selective N1/N4 1,4-Cycloaddition of 1,2,4,5-Tetrazines Enabled by Solvent Hydrogen Bonding Zixi Zhu, Christopher M. Glinkerman, and Dale L. Boger* Cite This: J. Am. Chem. Soc. 2020, 142, 20778−20787 Read Online ACCESS Metrics & More Article Recommendations *sı Supporting Information ABSTRACT: An unprecedented 1,4-cycloaddition (vs 3,6-cycloaddition) of 1,2,4,5- tetrazines is described with preformed or in situ generated aryl-conjugated enamines promoted by the solvent hydrogen bonding of hexafluoroisopropanol (HFIP) that is conducted under mild reaction conditions (0.1 M HFIP, 25 °C, 12 h). The reaction constitutes a formal [4 + 2] cycloaddition across the two nitrogen atoms (N1/N4) of the 1,2,4,5-tetrazine followed by a formal retro [4 + 2] cycloaddition loss of a nitrile and aromatization to generate a 1,2,4-triazine derivative. The factors that impact the remarkable change in the reaction mode, optimization of reaction parameters, the scope and simplification of its implementation through in situ enamine generation from aldehydes and ketones, the reaction scope for 3,6-bis(thiomethyl)-1,2,4,5- tetrazine, a survey of participating 1,2,4,5-tetrazines, and key mechanistic insights into this reaction are detailed. Given its simplicity and breath, the study establishes a novel method for the simple and efficient one-step synthesis of 1,2,4-triazines under mild conditions from readily accessible starting materials. Whereas alternative protic solvents (e.g., MeOH vs HFIP) provide products of the conventional 3,6-cycoladdition, the enhanced hydrogen bonding capability of HFIP uniquely results in promotion of the unprecedented formal 1,4-cycloaddition.