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Gardner, Michael George. Breakdown of Phylogenetic Signal: a Survey of Microsatellite Densities in 454 Shotgun Sequences from 154 Non Model Eukaryote Species
PUBLISHED VERSION Meglécz, Emese; Nève, Gabriel; Biffin, Edward Sturt; Gardner, Michael George. Breakdown of phylogenetic signal: a survey of microsatellite densities in 454 shotgun sequences from 154 non model Eukaryote species. PLoS ONE, 2012; 7(7):e40861 Copyright: © 2012 Meglécz et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. PERMISSIONS http://www.plosone.org/static/policies.action#copyright 3. Copyright and License Policies Open access agreement. Upon submission of an article, its authors are asked to indicate their agreement to abide by an open access Creative Commons license (CC-BY). Under the terms of this license, authors retain ownership of the copyright of their articles. However, the license permits any user to download, print out, extract, reuse, archive, and distribute the article, so long as appropriate credit is given to the authors and source of the work. The license ensures that the authors' article will be available as widely as possible and that the article can be included in any scientific archive. Open access agreement: US government authors. Papers authored by one or more US government employees are not copyrighted, but are licensed under a Creative Commons public domain license (CC0), which allows unlimited distribution and reuse of the article for any lawful purpose. Authors should read about CC-BY or CC0 before submitting papers. Archiving in PubMed Central. Upon publication, PLoS also deposits all articles in PubMed Central. This complies with the policies of funding agencies, such as the NIH in the USA, the Wellcome Trust, and the Research Councils in the UK, and the Deutsche Forschungsgemeinschaft in Germany, which request or require deposition of the published articles that they fund into publicly available databases. -
Post-Fire Impact Assessment for Priority Frogs: Northern Philoria
Post-fire impact assessment for priority frogs: northern Philoria Geoffrey Heard, Liam Bolitho, David Newell, Harry Hines, Hunter McCall, Jill Smith and Ben Scheele July 2021 Cite this publication as: Heard, G., Bolitho, L., Newell, D., Hines, H., McCall, H., Smith, J., and Scheele, B., 2021. Post-fire impact assessment for priority frogs: northern Philoria. NESP Threatened Species Recovery Hub Project 8.1.3 report, Brisbane. Main cover image: Philoria habitat. Image: Liam Bolitho. Insert images (from top to bottom): Philoria kundagungan. Image: Harry Hines; Philoria richmondensis. Image: David Newell; Philoria loveridgei. Image: Harry Hines. 2 Contents Executive Summary ............................................................................................................................................................................................................4 Introduction ..........................................................................................................................................................................................................................6 Background .................................................................................................................................................................................................................6 Study species ............................................................................................................................................................................................................. -
(Pyxicephalidae: Nothophryne) for Northern Mozambique Inselbergs
African Journal of Herpetology ISSN: 2156-4574 (Print) 2153-3660 (Online) Journal homepage: http://www.tandfonline.com/loi/ther20 New species of Mongrel Frogs (Pyxicephalidae: Nothophryne) for northern Mozambique inselbergs Werner Conradie, Gabriela B. Bittencourt-Silva, Harith M. Farooq, Simon P. Loader, Michele Menegon & Krystal A. Tolley To cite this article: Werner Conradie, Gabriela B. Bittencourt-Silva, Harith M. Farooq, Simon P. Loader, Michele Menegon & Krystal A. Tolley (2018): New species of Mongrel Frogs (Pyxicephalidae: Nothophryne) for northern Mozambique inselbergs, African Journal of Herpetology, DOI: 10.1080/21564574.2017.1376714 To link to this article: https://doi.org/10.1080/21564574.2017.1376714 View supplementary material Published online: 22 Feb 2018. Submit your article to this journal View related articles View Crossmark data Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=ther20 AFRICAN JOURNAL OF HERPETOLOGY, 2018 https://doi.org/10.1080/21564574.2017.1376714 New species of Mongrel Frogs (Pyxicephalidae: Nothophryne) for northern Mozambique inselbergs Werner Conradie a,b, Gabriela B. Bittencourt-Silva c, Harith M. Farooq d,e,f, Simon P. Loader g, Michele Menegon h and Krystal A. Tolley i,j aPort Elizabeth Museum (Bayworld), Marine Drive, Humewood 6013, South Africa; bSchool of Natural Resource Management, George Campus, Nelson Mandela University, George 6530, South Africa; cDepartment of Environmental Sciences, University of Basel, Basel -
Species Status Assessment Report for the Columbia Spotted Frog (Rana Luteiventris), Great Basin Distinct Population Segment
Species Status Assessment Report for the Columbia Spotted Frog (Rana luteiventris) Great Basin Distinct Population Segment Photo by Jim Harvey Photo: Jim Harvey U.S. Fish and Wildlife Service Region 8 Reno Fish and Wildlife Office Reno, Nevada Suggested reference: U.S. Fish and Wildlife Service. 2015. Species status assessment report for the Columbia spotted frog (Rana luteiventris), Great Basin Distinct Population Segment. Reno Fish and Wildlife Office, Reno, Nevada. vii + 86 pp. ii Executive Summary In this Species Status Assessment (SSA), we evaluate the biological status of Columbia spotted frogs (Rana luteiventris) in the Great Basin both currently and into the future through the lens of the species’ resiliency, redundancy, and representation. This SSA Report provides a comprehensive assessment of biology and natural history of Columbia spotted frogs and assesses demographic risks, stressors, and limiting factors. Herein, we compile biological data and a description of past, present, and likely future stressors (causes and effects) facing Columbia spotted frogs in the Great Basin. Columbia spotted frogs are highly aquatic frogs endemic to the Great Basin, northern Rocky Mountains, British Columbia, and southeast Alaska. Columbia spotted frogs in southeastern Oregon, southwestern Idaho, and northeastern and central Nevada make up the Great Basin Distinct Population Segment (DPS; Service 2015, pp. 1–10). Columbia spotted frogs are closely associated with clear, slow-moving streams or ponded surface waters with permanent hydroperiods and relatively cool constant water temperatures (Arkle and Pilliod 2015, pp. 9–11). In addition to permanently wet habitat, streams with beaver ponds, deep maximum depth, abundant shoreline vegetation, and non-salmonid fish species have the greatest probability of being occupied by Columbia spotted frogs within the Great Basin (Arkle and Pilliod 2015, pp. -
Review Article Distribution and Conservation Status of Amphibian
Mongabay.com Open Access Journal - Tropical Conservation Science Vol.7 (1):1-25 2014 Review Article Distribution and conservation status of amphibian and reptile species in the Lacandona rainforest, Mexico: an update after 20 years of research Omar Hernández-Ordóñez1, 2, *, Miguel Martínez-Ramos2, Víctor Arroyo-Rodríguez2, Adriana González-Hernández3, Arturo González-Zamora4, Diego A. Zárate2 and, Víctor Hugo Reynoso3 1Posgrado en Ciencias Biológicas, Universidad Nacional Autónoma de México; Av. Universidad 3000, C.P. 04360, Coyoacán, Mexico City, Mexico. 2 Centro de Investigaciones en Ecosistemas, Universidad Nacional Autónoma de México, Antigua Carretera a Pátzcuaro No. 8701, Ex Hacienda de San José de la Huerta, 58190 Morelia, Michoacán, Mexico. 3Departamento de Zoología, Instituto de Biología, Universidad Nacional Autónoma de México, 04510, Mexico City, Mexico. 4División de Posgrado, Instituto de Ecología A.C. Km. 2.5 Camino antiguo a Coatepec No. 351, Xalapa 91070, Veracruz, Mexico. * Corresponding author: Omar Hernández Ordóñez, email: [email protected] Abstract Mexico has one of the richest tropical forests, but is also one of the most deforested in Mesoamerica. Species lists updates and accurate information on the geographic distribution of species are necessary for baseline studies in ecology and conservation of these sites. Here, we present an updated list of the diversity of amphibians and reptiles in the Lacandona region, and actualized information on their distribution and conservation status. Although some studies have discussed the amphibians and reptiles of the Lacandona, most herpetological lists came from the northern part of the region, and there are no confirmed records for many of the species assumed to live in the region. -
ARAZPA Amphibian Action Plan
Appendix 1 to Murray, K., Skerratt, L., Marantelli, G., Berger, L., Hunter, D., Mahony, M. and Hines, H. 2011. Guidelines for minimising disease risks associated with captive breeding, raising and restocking programs for Australian frogs. A report for the Australian Government Department of Sustainability, Environment, Water, Population and Communities. ARAZPA Amphibian Action Plan Compiled by: Graeme Gillespie, Director Wildlife Conservation and Science, Zoos Victoria; Russel Traher, Amphibian TAG Convenor, Curator Healesville Sanctuary Chris Banks, Wildlife Conservation and Science, Zoos Victoria. February 2007 1 1. Background Amphibian species across the world have declined at an alarming rate in recent decades. According to the IUCN at least 122 species have gone extinct since 1980 and nearly one third of the world’s near 6,000 amphibian species are classified as threatened with extinction, placing the entire class at the core of the current biodiversity crisis (IUCN, 2006). Australasia too has experienced significant declines; several Australian species are considered extinct and nearly 25% of the remainder are threatened with extinction, while all four species native to New Zealand are threatened. Conventional causes of biodiversity loss, habitat destruction and invasive species, are playing a major role in these declines. However, emergent disease and climate change are strongly implicated in many declines and extinctions. These factors are now acting globally, rapidly and, most disturbingly, in protected and near pristine areas. Whilst habitat conservation and mitigation of threats in situ are essential, for many taxa the requirement for some sort of ex situ intervention is mounting. In response to this crisis there have been a series of meetings organised by the IUCN (World Conservation Union), WAZA (World Association of Zoos & Aquariums) and CBSG (Conservation Breeding Specialist Group, of the IUCN Species Survival Commission) around the world to discuss how the zoo community can and should respond. -
Baw Baw Frog Philoria Frosti
Action Statement Flora and Fauna Guarantee Act 1988 No. 55 (Revised in 2004) Baw Baw Frog Philoria frosti Description and distribution The Baw Baw Frog (Philoria frosti) is predominantly dark brown flecked with black, with some lighter patches. Its underbelly and groin are cream or yellowish and heavily mottled with brown. A prominent black, lobe-shaped parotoid gland, located behind the eye, extends back over each shoulder. Small tubercles or 'warts' exist on the sides and rump. The belly and throat are smooth (Cogger 2000). Adult female frogs are larger than males, measuring on average about 52 and 45 mm, respectively (Malone 1985a). Eggs are large (4 mm diameter) and unpigmented (Littlejohn 1963; Malone 1985a, b; Anstis 2002). Larvae are unpigmented following hatching, but Baw Baw Frog (Philoria frosti) Photo: Greg Hollis increase in pigmentation up until metamorphosis (Littlejohn 1963; Anstis 2002). Larvae are also non- feeding, hatching with a large residual yolk to support them nutritionally through to metamorpohosis (Malone 1985a; Anstis 2002). Following metamorphosis, juvenile frogs are cream to brown, with dark brown irregular flecks and patches, and a distinct dark-brown band occurs from the snout, through the eye, to the base of the forelimb. The Baw Baw Frog is restricted to the Baw Baw Plateau and adjacent escarpment, approximately 120 km east of Melbourne (Hollis 1997; Hollis 2004). It occurs in the Baw Baw National Park, Mt Baw Baw Alpine Resort and State Forest at elevations between 900 and 1564 m, encompassing Distribution in Victoria (source: Atlas of a total area of 135 km2 (Hollis 2004). -
Rocky Mountain Tailed Frog (Ascaphus Montanus) in Canada
Species at Risk Act Recovery Strategy Series Adopted under Section 44 of SARA Recovery Strategy for the Rocky Mountain Tailed Frog (Ascaphus montanus) in Canada Rocky Mountain Tailed Frog 2015 Recommended citation: Environment Canada. 2015. Recovery Strategy for the Rocky Mountain Tailed Frog (Ascaphus montanus) in Canada. Species at Risk Act Recovery Strategy Series. Environment Canada, Ottawa. 20 pp. + Annex. For copies of the recovery strategy, or for additional information on species at risk, including the Committee on the Status of Endangered Wildlife in Canada (COSEWIC) Status Reports, residence descriptions, action plans, and other related recovery documents, please visit the Species at Risk (SAR) Public Registry1. Cover illustration: Purnima Govindarajulu Également disponible en français sous le titre « Programme de rétablissement de la grenouille-à-queue des Rocheuses (Ascaphus montanus) au Canada » © Her Majesty the Queen in Right of Canada, represented by the Minister of the Environment, 2015. All rights reserved. ISBN 978-0-660-03404-1 Catalogue no. En3-4/210-2015E-PDF Content (excluding the illustrations) may be used without permission, with appropriate credit to the source. 1 http://www.registrelep-sararegistry.gc.ca RECOVERY STRATEGY FOR THE ROCKY MOUNTAIN TAILED FROG (Ascaphus montanus) IN CANADA 2015 Under the Accord for the Protection of Species at Risk (1996), the federal, provincial, and territorial governments agreed to work together on legislation, programs, and policies to protect wildlife species at risk throughout Canada. In the spirit of cooperation of the Accord, the Government of British Columbia has given permission to the Government of Canada to adopt the Recovery Plan for the Rocky Mountain Tailed Frog (Ascaphus montanus) in British Columbia (Part 2) under Section 44 of the Species at Risk Act. -
ARAZPA YOTF Infopack.Pdf
ARAZPA 2008 Year of the Frog Campaign Information pack ARAZPA 2008 Year of the Frog Campaign Printing: The ARAZPA 2008 Year of the Frog Campaign pack was generously supported by Madman Printing Phone: +61 3 9244 0100 Email: [email protected] Front cover design: Patrick Crawley, www.creepycrawleycartoons.com Mobile: 0401 316 827 Email: [email protected] Front cover photo: Pseudophryne pengilleyi, Northern Corroboree Frog. Photo courtesy of Lydia Fucsko. Printed on 100% recycled stock 2 ARAZPA 2008 Year of the Frog Campaign Contents Foreword.........................................................................................................................................5 Foreword part II ………………………………………………………………………………………… ...6 Introduction.....................................................................................................................................9 Section 1: Why A Campaign?....................................................................................................11 The Connection Between Man and Nature........................................................................11 Man’s Effect on Nature ......................................................................................................11 Frogs Matter ......................................................................................................................11 The Problem ......................................................................................................................12 The Reason -
Rocky Mountain Tailed Frog (Ascaphus Montanus) in Canada
PROPOSED Species at Risk Act Recovery Strategy Series Adopted under Section 44 of SARA Recovery Strategy for the Rocky Mountain Tailed Frog (Ascaphus montanus) in Canada Rocky Mountain Tailed Frog 2015 Recommended citation: Environment Canada. 2015. Recovery Strategy for the Rocky Mountain Tailed Frog (Ascaphus montanus) in Canada [Proposed]. Species at Risk Act Recovery Strategy Series. Environment Canada, Ottawa. 20 pp. + Annex. For copies of the recovery strategy, or for additional information on species at risk, including COSEWIC Status Reports, residence descriptions, action plans, and other related recovery documents, please visit the SAR Public Registry1. Cover illustration: Purnima Govindarajulu Également disponible en français sous le titre « Programme de rétablissement de la grenouille-à-queue des Rocheuses (Ascaphus montanus) au Canada [Proposition] » © Her Majesty the Queen in Right of Canada, represented by the Minister of the Environment, 2015. All rights reserved. ISBN Catalogue no. Content (excluding the illustrations) may be used without permission, with appropriate credit to the source. 1 http://sararegistry.gc.ca/default.asp?lang=En&n=24F7211B-1 RECOVERY STRATEGY FOR THE ROCKY MOUNTAIN TAILED FROG (Ascaphus montanus) IN CANADA 2015 Under the Accord for the Protection of Species at Risk (1996), the federal, provincial, and territorial governments agreed to work together on legislation, programs, and policies to protect wildlife species at risk throughout Canada. In the spirit of cooperation of the Accord, the Government of British Columbia has given permission to the Government of Canada to adopt the Recovery Plan for the Rocky Mountain Tailed Frog (Ascaphus montanus) in British Columbia (Part 2) under Section 44 of the Species at Risk Act. -
Appendix 2: Threatened Species That Are Addressed Only in the Border
Appendiix 2: Threatened speciies that are addressed only in the Border Ranges Raiinforest Biiodiversiity Management Pllan The tables below list the threatened species that are addressed in the Border Ranges Rainforest Biodiversity Management Plan (DECCW 2010) and not in this Plan. The reason for this being that these species have a substantial area of their distribution and habitat within the Border Ranges Planning Area comprising rainforest and associated vegetation. The status of each threatened species and ecological community relates to its listing under one or more of the following pieces of legislation: • Commonwealth Environment Protection and Biodiversity Conservation Act 1999 (EPBC Act) • NSW Threatened Species Conservation Act 1995 (TSC Act) • NSW Fisheries Management Act 1994 (FM Act). Abbreviations used to define status are as follows: • CE = critically endangered • E = endangered • V = vulnerable Flora Threatened status Common name Scientific name EPBC Act TSC Act FM Act Herb (6): Cliff Sedge Cyperus rupicola V Isoglossa Isoglossa eranthemoides E E Missionary Nutgrass Cyperus semifertilis E Pointed Trefoil Rhynchosia acuminatissima V Pretty Eyebright Euphrasia bella V V Rock-face Bluebell Wahlenbergia scopulicola E Orchid (3): Blotched Sarcochilus Sarcochilus weinthalii V V Hartman's Sarcochilus Sarcochilus hartmannii V V Yellow-flowered King of the Fairies Oberonia complanata E Ground fern (3): Giant Fern Angiopteris evecta E Needle-leaf Fern Belvisia mucronata E Short-footed Screw Fern Lindsaea brachypoda E Shrub (16): Border Ranges Nightshade Solanum limitare E Brush Sophora Sophora fraseri V V Coastal Fontainea Fontainea oraria E E Corokia Corokia whiteana V V Giant Spear Lily Doryanthes palmeri V Northern Rivers Regional Biodiversity Management Plan: Appendix 2 1 Threatened status Common name Scientific name EPBC Act TSC Act FM Act Gympie Stinger Dendrocnide moroides E Jointed Baloghia Baloghia marmorata V V McPherson Range Pomaderris Pomaderris notata V Mt Merino Waxberry Gaultheria viridicarpa subsp. -
Factors Affecting the Distribution of Amphibians in Western Wyoming
Factors affecting the distribution of amphibians in western Wyoming Final Report October 16, 2019 Prepared by Zach Wallace and Lusha Tronstad University of Wyoming Wyoming Natural Diversity Database Recommended citation: Wallace, Z., and L. Tronstad. 2019. Factors affecting the distribution of amphibians in western Wyoming. Report prepared for Wyoming Game and Fish Department, Fisheries Division by University of Wyoming, Wyoming Natural Diversity Database. i Abstract Effective conservation and management of amphibians requires an understanding of how environmental and anthropogenic factors affect their distributions. Previous inventories of amphibians in western Wyoming suggested the Wind River Range had low species diversity relative to the rest of the region, despite apparently suitable habitat. To understand why, we surveyed amphibians and chytrid fungus (Batrachochytrium dendrobatidis; Bd) in montane wetlands of western Wyoming using a combination of visual and environmental DNA (eDNA) sampling, and tested hypotheses on factors influencing their occurrence and detectability using hierarchical models. Unique to this study was an interest in the potential influence of bedrock geology on amphibian occurrence through its effects on water quality. Our results suggested water quality, landscape context, and wetland characteristics had the strongest influences on amphibian occupancy. Relationships of occupancy with geology were not apparent for most amphibian species, but may have occurred indirectly through the influence of bedrock on wetland