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(10) Patent No.: US 9062298 B2 USOO9062298B2 (12) United States Patent (10) Patent No.: US 9,062,298 B2 Lu et al. (45) Date of Patent: *Jun. 23, 2015 (54) ANTIDOTES FOR FACTOR XA INHIBITORS 5,939,304 A 8, 1999 Suzuki et al. AND METHODS OF USING THE SAME 6,060,300 A 5/2000 Raditsch et al. 6,069,234 A 5, 2000 Chmielewska et al. 6,086,871 A 7/2000 Fischer et al. (71) Applicant: Portola Pharmaceuticals, Inc., South 6,376,515 B2 4/2002 Zhu et al. San Francisco, CA (US) 6,472,562 B1 10/2002 Klingler et al. 6,660,885 B2 12/2003 South et al. (72) Inventors: Genmin Lu, Burlingame, CA (US); 6,835,739 B2 12/2004 Zhu et al. David R. Phillips, San Mateo, CA (US); 3: 538 Night s al. Patrick Andre, San Mateo, CA (US); 7,220,569 B2 5/2007 HimmelspachO. ca. et al. Uma Sinha, San Francisco, CA (US) 7,220,849 B2 5/2007 High et al. 7,247,654 B2 7/2007 Priestley et al. (73) Assignee: Portola Pharmaceuticals, Inc., South 7,598.276 B2 10/2009 Grant et al. San Francisco, CA (US) 8,153,590 B2 4/2012 Lu et al. ..................... 514,144 8,268,783 B2 * 9/2012 Sinha et al. ... 514,144 (*) Notice: Subject to any disclaimer, the term of this 3. R: ck 38. y r 3. patent is extended or adjusted under 35 2003/0064414 A1 4/2003 Benecky et al. U.S.C. 154(b) by 0 days. 2003/02O7796 A1 11/2003 Sinha et al. 2004/O198660 A1 10, 2004 Petersen et al. This patent is Subject to a terminal dis- 2005/00098.95 A1 1/2005 Priestley et al. claimer. 2007/01 12039 A1 5/2007 Grant et al. (21) Appl. No.: 13/889,014 FOREIGN PATENT DOCUMENTS (22) Filed: May 7, 2013 CA 2156991 2, 1996 EP 182O 508 AO 8, 2007 O O WO WO-96.OO577 1, 1996 (65) Prior Publication Data WO WO-98,38317 9, 1998 WO WO-98.38318 AO 9, 1998 US 2014/OO44773 A1 Feb. 13, 2014 WO WO-98.39456 AO 9, 1998 O O WO WO-2007/059513 5/2007 Related U.S. Application Data WO WO-2007/096116 8/2007 (63) Continuation of application No. 13/414,499, filed on W. W323 $392 Mar. 7, 2012, now Pat. No. 8,455,441, which is a inued continuation of application No. 12/239.651, filed on (Continued) Sep. 26, 2008, now Pat. No. 8,153,590. OTHER PUBLICATIONS (60) gal applits C.2. s Sp Morita et al., J Biol Chem. Mar. 25, 1986:261 (9):4015-23.* file d p pp s s Rezaie et al., “Analysis of the Functions of the First Epidermal ed on Aug. 20, 2008. Growth Factor-like Domain of Factor X.” the Journal of Biological Chemistry, Apr. 15, 1993, vol. 268, No. 11, pp. 8176-8180. (51) Int. Cl. Rezaie et al., "Contribution of Residue 192 in Factor Xa to Enzymeym A6 IK39/00 (2006.01) Specificity and Function.” The Journal of Biological Chemistry, Jul. CI2N 9/64 (2006.01) 7, 1995, vol. 270, No. 27, pp. 16176-16181. A6 IK38/48 3:08: Yang et al., “Antibodies Against the Activated Coagulation Factor X A6 IK 47/48 2006.O1 (FXa) in the Antiphospholipid Syndrome that Interfere with the FXa. (52) U.S. Cl. Inactivation by Antithrombin.” J. Immunol. Dec. 1, 2006, vol. 177. CPC .......... CI2N 9/6432 (2013.01); A61K 38/4826 No. 11, pp. 1-17. (2013.01); A61K 38/4833 (2013.01); A61 K (Continued) 38/4846 (2013.01); A61 K38/4853 (2013.01); A61 K 39/00 (2013.01); A61K47/48215 Pri Exami Michael SZperk (2013.01): CI2Y 304/21006 (2013.01) rimary Examiner - Michael Szperka r (58) Field of Classification Search (74) Attorney, Agent, or Firm — Sheppard Mullin Richter & None Hampton LLP S ee appl1cauonlication fileIlle fIor completelet searcnh historv.n1Story (57) ABSTRACT (56) References Cited The present invention relates antidotes to anticoagulants tar geting factor Xa. The antidotes are factor Xa protein deriva U.S. PATENT DOCUMENTS tives that bind to the factor Xa inhibitors thereby substantially 5,278,144 A 1, 1994 Wolf neutralizing them but do not assemble into the prothrombi 5,589,571 A 12/1996 King nase complex. The derivatives describe herein lack or have 5,589,572 A 12/1996 King reduced intrinsic coagulant activity. Disclosed herein are 5,597,799 A 1, 1997 Wolf methods of stopping or preventing bleeding in a patient that is 5,602,233 A 2/1997 King 5,679,639 A 10, 1997 Griffin et al. currently undergoing anticoagulant therapy with a factor Xa 5,770,699 A 6/1998 King inhibitor. 5,795,863 A 8, 1998 Wolf 5,817.309 A 10, 1998 Nowak et al. 18 Claims, 12 Drawing Sheets US 9,062.298 B2 Page 2 (56) References Cited Hylek (2007) "Drug evaluation: DU-176b, an oral, direct factor Xa antagonist”. Curr Opin Invest Drugs 8(9):778-783. Izaguirre et al. "Mechanism by Which Exosites Promote the Inhibi FOREIGN PATENT DOCUMENTS tion of Blood Coagulation Proteases by Heparin-activated WO WO-2010/070137 6/2010 Antithrombin” (2007) J. Boil. Chem. 282,33609-33622. WO WO-2011/008885 1/2011 Jesty et al. (1975) "The activation of coagulation factor X” J. Biol. Chem. 250(12):4497-4504. OTHER PUBLICATIONS Kubitza et al. (2005) “Safety, pharmacodynamics, and U.S. Appl. No 07/808,329 filed Dec. 16, 1991, Wolf. pharmacokinetics of BAY 59-7939—an oral, direct factor Xa inhibi Agnelli et al. (2007) "A phase II study of the oral factor Xa inhibitor tor—after multiple dosing in healthy male subjects' Eur, J. Clin. LY517717 for the prevention of venous thromboembolism after hip or knee replacement” J. Thromb. Haemost. 5(4):746-753. Pharmacol. 61:873-880. Ansell et al. (2004) “The Pharmacology and Management of the Larson et al. (1998) "Structure/Function analysis of recombinant Vitamin K Antagonists: The Seventh ACCP Conference on variants of human factor Xa. Factor Xa incorporation into Antithrombotic and Thrombolytic Therapy” Chest 126:204-233. Prothrombinase on the thrombin-activated platelet surface is not Bajajetal. (1982) "Decarboxylation of?-carboxyglutamic acid resi mimicked by synthetic phospholipid vesicles' Biochem. 37:5029 dues in human prothrombin” J. Biol. Chem. 257(7):3726-3731. 5038. Betz et al. (1999) “Inhibition of factor Xa by a peptidyl-a- Lauritzen et al. 2005 "Recombinant human FVlla reduces heparin ketothiazole involves two steps. Evidence for a stabilizing and low molecular weight heparin (LMWH)-induced in rats' Blood conformational change” Biochem. 38(44): 14582-14591. 106:607A-608A: Abstract No. 2149. Bijsterveld et al. (2002) "Ability of recombinant factor Vilato reverse Levi et al. (2004) “Recombinant factor VIIa as an antidote for the anticoagulant effect of the pentasaccharide fondaparinux in anticoagulant treatment” Seminars in Hematology 41(1):(Supp. 1) healthy volunteers' Circulation 106:2550-2554. 65-69. Bijsterveld etal. (2002) "Neutralization of the anticoagulant effect of Leytus et al. (1986) “Gene for human factor X: A blood coagulation fondaparinux by recombinant activated factor VII in healthy male factor shoes gene organization is essentially identical with that of volunteers' European Heart Journal 23:725: Abstract No. P3701. factor IX and Protein C” Biochemistry 25:5098-5102. Brandstetter, Hetal. (1996)"X-ray Structure of Active Site-inhibited Lin PH. et al. (1997) “Reversible Acylation of Factor Xa as a Poten clotting Factor Xa” J. Bio. Chem. 271 (47): 29988-29992. tial therapy for Hemophilia” Thrombosis Res. 88(4):365-372. Camire (2002) "Protothrombinase assembly and S1 site occupation Lisman et al. (2003) "Recombinant factor VIIa reverses the in vitro restore the catalytic site of FXa impaired by mutation at the sodium and ex vivo anticoagulant and profibinolytic effects of fondaparinux s binding site” Journal of Biological Chemistry 277(40):37863-37870. Journal of Thrombosis and Haemostasis 1:2368-22373. Camire et al. (2000)"Enhance?-carboxylation of recombinant factor Lu, G. et al., “Recombinant Antidote for Reversal of Anticoagulation X using a chimeric construct containing the prothrombin propeptide' by Factor Xa. Inhibitors”, BLOOD, vol. 112, No. 11, p. 362 (2008). Biochem. 39:14322-14329. Luettgen et al. (2006) In vitro evaluation of apixoban, a novel, potent, Chang et al. (2001) "Low molecular weight protamine as nontoxic selective and orally bioavailable factor Xa inhibitor Blood 108(11): heparin/low molecular weight heparin antidote (III): Preliminary in abstract 4130 Retrieved online from http://abstracts. vivo evaluation of efficacy and toxicity using a canine model” AAPS hematologylibrary.org/cgi/content/abstract/108/11/ Pharmsci. 3(2):1-8: Article 19. 4130Pmaxtoshow =&HITS=10&hits=10&RESULTFORMAT= DE 4430205 (English abstract). &fulltext-Evaluation+of+Apixaban&searchid=1 Elget al. (2001) “Effects of agents, used to treat bleeding disorders, &FIRSTINDEX=0&volume=108&issue=11 on bleeding time prolonged by a very high dose of a direct thrombin &resourcetype=HWCIT). inhibitor in anesthesized rats and rabbits' Thrombosis Research Mann et al. (1990) "Surface-Dependent reactions of the Vitamin 101:159-170. K-Dependent Enzyme Complexes” Blood 76(1):1-16. Eriksson et. al. (2005) “YM150, an oral direct factor Xa inhibitor, as Mann, Kget al. (1990) "Surface-Dependent reactions of the Vitamin prophylaxis for venous thrombeombolism in patients with elective K-Dependent Enzyme Complexes” Blood 76(1):1-16. primary hip replacement sturgery. A dose escalation study.” Blood Morita et al. (1986) “Preparation and properties of derivatives of 106(11), Abstract 1865; Retrieved online from http://abstracts. bovine factor X and Factor Xa from which the ?-Carboxyglutamic hematologylibrary.org/cgi/content/abstract/106/11/ acid containing domain has been removed' J.
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