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Molecular Motor Contractile Mechanism of Retinal Pericytes T.C. REPUBLIC OF TURKEY HACETTEPE UNIVERSITY GRADUATE SCHOOL OF HEALTH SCIENCES MOLECULAR MOTOR CONTRACTILE MECHANISM OF RETINAL PERICYTES Gülce KÜRELİ, MD Neuroscience Program DOCTOR OF PHILOSOPHY THESIS ANKARA 2020 T.C. REPUBLIC OF TURKEY HACETTEPE UNIVERSITY GRADUATE SCHOOL OF HEALTH SCIENCES MOLECULAR MOTOR CONTRACTILE MECHANISM OF RETINAL PERICYTES Gülce KÜRELİ, MD Neuroscience Program DOCTOR OF PHILOSOPHY THESIS SUPERVISOR Prof. Dr. Turgay DALKARA ANKARA 2020 iii APPROVAL PAGE HACETTEPE UNIVERSITY GRADUATE SCHOOL OF HEALTH SCIENCES MOLECULAR MOTOR CONTRACTILE MECHANISM OF RETINAL PERICYTES Gülce KÜRELİ Supervisor: Prof. Dr. Turgay DALKARA This thesis study has been approved and accepted as a PhD dissertation in “Neuroscience PhD Program” by the assessment committee, whose members are listed below, on 20.10.2020. Chairman of the Committee : Prof. Dr. Bülent ELİBOL (Signature) (Hacettepe Üniversitesi) Member : Prof. Dr. Şaban Remzi ERDEM (Signature) (Başkent Üniversitesi) Member : Prof. Dr. Alp CAN (Signature) (Ankara Üniversitesi) Member : Prof. Dr. Nikolaus Plesnila (Signature) (Ludwig-Maximilians-Universität München) Member : Asst. Prof. Dr. Evren ERDENER (Signature) (Hacettepe Üniversitesi) This dissertation has been approved by the above committee in conformity to the related issues of Hacettepe University Graduate Education and Examination Regulation. Prof. Diclehan ORHAN, MD, PhD Director iv YAYIMLAMA VE FİKRİ MÜLKİYET HAKLARI BEYANI Enstitü tarafından onaylanan lisansüstü tezimin/raporumun tamamını veya herhangi bir kısmını, basılı (kağıt) ve elektronik formatta arşivleme ve aşağıda verilen koşullarla kullanıma açma iznini Hacettepe Üniversitesine verdiğimi bildiririm. Bu izinle Üniversiteye verilen kullanım hakları dışındaki tüm fikri mülkiyet haklarım bende kalacak, tezimin tamamının ya da bir bölümünün gelecekteki çalışmalarda (makale, kitap, lisans ve patent vb.) kullanım hakları bana ait olacaktır. Tezin kendi orijinal çalışmam olduğunu, başkalarının haklarını ihlal etmediğimi ve tezimin tek yetkili sahibi olduğumu beyan ve taahhüt ederim. Tezimde yer alan telif hakkı bulunan ve sahiplerinden yazılı izin alınarak kullanılması zorunlu metinlerin yazılı izin alınarak kullandığımı ve istenildiğinde suretlerini Üniversiteye teslim etmeyi taahhüt ederim. Yükseköğretim Kurulu tarafından yayınlanan “Lisansüstü Tezlerin Elektronik Ortamda Toplanması, Düzenlenmesi ve Erişime Açılmasına İlişkin Yönerge” kapsamında tezim aşağıda belirtilen koşullar haricince YÖK Ulusal Tez Merkezi / H.Ü. Kütüphaneleri Açık Erişim Sisteminde erişime açılır. o Enstitü / Fakülte yönetim kurulu kararı ile tezimin erişime açılması mezuniyet tarihimden itibaren 2 yıl ertelenmiştir. (1) o Enstitü / Fakülte yönetim kurulunun gerekçeli kararı ile tezimin erişime açılması mezuniyet tarihimden itibaren 6 ay ertelenmiştir. (2) o Tezimle ilgili gizlilik kararı verilmiştir. (3) 17/11/2020 İmza) Gülce KÜRELİ i i“Lisansüstü Tezlerin Elektronik Ortamda Toplanması, Düzenlenmesi ve Erişime Açılmasına İlişkin Yönerge” (1) Madde 6. 1. Lisansüstü tezle ilgili patent başvurusu yapılması veya patent alma sürecinin devam etmesi durumunda, tez danışmanının önerisi ve enstitü anabilim dalının uygun görüşü üzerine enstitü veya fakülte yönetim kurulu iki yıl süre ile tezin erişime açılmasının ertelenmesine karar verebilir. (2) Madde 6. 2. Yeni teknik, materyal ve metotların kullanıldığı, henüz makaleye dönüşmemiş veya patent gibi yöntemlerle korunmamış ve internetten paylaşılması durumunda 3. şahıslara veya kurumlara haksız kazanç imkanı oluşturabilecek bilgi ve bulguları içeren tezler hakkında tez danışmanının önerisi ve enstitü anabilim dalının uygun görüşü üzerine enstitü veya fakülte yönetim kurulunun gerekçeli kararı ile altı ayı aşmamak üzere tezin erişime açılması engellenebilir. (3) Madde 7. 1. Ulusal çıkarları veya güvenliği ilgilendiren, emniyet, istihbarat, savunma ve güvenlik, sağlık vb. konulara ilişkin lisansüstü tezlerle ilgili gizlilik kararı, tezin yapıldığı kurum tarafından verilir *. Kurum ve kuruluşlarla yapılan işbirliği protokolü çerçevesinde hazırlanan lisansüstü tezlere ilişkin gizlilik kararı ise, ilgili kurum ve kuruluşun önerisi ile enstitü veya fakültenin uygun görüşü üzerine üniversite yönetim kurulu tarafından verilir. Gizlilik kararı verilen tezler Yükseköğretim Kuruluna bildirilir. Madde 7.2. Gizlilik kararı verilen tezler gizlilik süresince enstitü veya fakülte tarafından gizlilik kuralları çerçevesinde muhafaza edilir, gizlilik kararının kaldırılması halinde Tez Otomasyon Sistemine yüklenir * Tez danışmanının önerisi ve enstitü anabilim dalının uygun görüşü üzerine enstitü veya fakülte yönetim kurulu tarafından karar verilir. v ETHICAL DECLARATION In this thesis study, I declare that all the information and documents have been obtained in the base of the academic rules and all audio-visual and written information and results have been presented according to the rules of scientific ethics. I did not do any distortion in data set. In case of using other works, related studies have been fully cited in accordance with the scientific standards. I also declare that my thesis study is original except cited references. It was produced by myself in consultation with supervisor (Prof. Dr. Turgay Dalkara) and written according to the rules of thesis writing of Hacettepe University Institute of Health Sciences. (Signature) Gülce KÜRELİ vi ACKNOWLEDGEMENTS I would like to thank to my parents Sezgi&İhsan, my sister Ece, other family members and friends for their endless support. I thank to Hacettepe University Scientific Research Projects Coordination Unit for the financial support. I have learned a lot from all members of the Institute of Neurological Sciences and Psychiatry, who were always very supportive, helpful and friendly. Hereby I thank to Anisa, Aslıhan B.V., Aslıhan T.S., Buket, Canan Ç.A., Canan K.B., Dilek, Doğa, Duygu, Eda, Elif, Emre Cem, Ecehan, Gökhan, Gül, Hülya, İlkay, İlksen, Melike, Merve, Mesut, Muhammet, Nevin, Nursel, Onur, Taha, Tuğba and Zafer. Special thanks to Atagün, Burak, Gökçe, Özlem and Zeynep for becoming another family to me. I thank to professors Bülent Elibol, Emine Eren-Koçak, Hülya Karataş-Kurşun and Müge Yemişci-Özkan; Alp Can and Ş. Remzi Erdem for sharing their invaluable knowledge and experience during my PhD process. This thesis was founded on the retinal techniques that I learned from Dr. Sinem Yılmaz-Özcan. She also contributed to gene knockdown. I would like to thank to her for being a great instructor. Dr. Evren Erdener had invaluable contributions in the improvement of this thesis. He adapted and developed the techniques for 3D model preparation and FRET analysis. I have learned a lot from him about microscopy, image processing and analysis. I would like to thank to him for all his efforts and fruitful scientific discussions. Last but not least, I would like to thank to Prof. Dr. Turgay Dalkara. He has always been a very supportive and dedicated supervisor. None of these could have been done without his experience and guidance. vii ABSTRACT Kureli, G., Molecular Motor Contractile Mechanism of Retinal Pericytes, Hacettepe University Graduate School of Health Sciences, Neuroscience Program, Doctor of Philosophy Thesis, Ankara, 2020. Although it is known that capillary pericytes function in the regulation of capillary tone and blood flow, the contractile proteins involved in these processes are unidentified. It is likely that α-SMA functions as a part of contractile apparatus in pericytes as it does in smooth muscle cells. Therefore, we examined the expression of α-SMA along the mouse retinal microvascular network together with the expression of Myh11 protein, which we identified as the potential myosin heavy chain isoform candidate based on the single cell transcriptomic data in the literature. We found that α-SMA is expressed by capillary pericytes, but depolymerization must be prevented for its demonstration in downstream segments, in contrast to Myh11, which highly colocalizes with α-SMA but is present throughout the microvascular tree. Immunofluorescent signals delineated close association of α- SMA and Myh11, which was also confirmed by high FRET efficiency, oriented as thin strands reminiscent of stress-fibers, conforming to a contractile function. The functional correspondence of this spatial association was evaluated by inhibition of actomyosin cross-bridge cycling with blebbistatin, which prevented noradrenaline- induced vasoconstriction. Alongside, a supportive mechanism in cellular contraction, actin polymerization, was assessed using markers identifying filamentous and globular forms of actin. After intravitreal noradrenaline application, actin polymerization was pronounced in downstream capillary pericytes, suggesting a need for actin polymerization for contractile force generation because they express α-SMA in low quantities. In conclusion, pericytes contract using actomyosin cross-bridge cycling, which is supplemented by actin polymerization in downstream pericytes. Key Words: pericyte, actin, myosin, contractility, retina This study is supported by Hacettepe University Scientific Research Projects Coordination Unit with the project number THD-2018-17247. viii ÖZET Küreli, G., Retinal Perisitlerin Moleküler Motor Kasılma Mekanizması, Hacettepe Üniversitesi Sağlık Bilimleri Enstitüsü Temel Nörolojik Bilimler Programı, Doktora Tezi, Ankara, 2020. Kılcal perisitlerin tonus ve kan akışının düzenlenmesinde görev yaptığı bilinmesine rağmen, bu süreçlerde yer alan kasılabilir proteinler
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