Transfers to Simsia and Description of Davilanthus, a New Genus of Asteraceae (Heliantheae)
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Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution
Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology in the Graduate Division of the University of California, Berkeley Committee in charge: Dr. Bruce G. Baldwin, Chair Dr. John P. Huelsenbeck Dr. Brent D. Mishler Dr. Kipling W. Will Fall 2017 Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution Copyright 2017 by William Allen Freyman Abstract Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology University of California, Berkeley Dr. Bruce G. Baldwin, Chair Key evolutionary transitions have shaped the tree of life by driving the processes of spe- ciation and extinction. This dissertation aims to advance statistical and computational ap- proaches that model the timing and nature of these transitions over evolutionary trees. These methodological developments in phylogenetic comparative biology enable formal, model- based, statistical examinations of the macroevolutionary consequences of trait evolution. Chapter 1 presents computational tools for data mining the large-scale molecular sequence datasets needed for comparative phylogenetic analyses. I describe a novel metric, the miss- ing sequence decisiveness score (MSDS), which assesses the phylogenetic decisiveness of a matrix given the pattern of missing sequence data. In Chapter 2, I introduce a class of phylogenetic models of chromosome number evolution that accommodate both anagenetic and cladogenetic change. -
CHLOROPLAST Matk GENE PHYLOGENY of SOME IMPORTANT SPECIES of PLANTS
AKDENİZ ÜNİVERSİTESİ ZİRAAT FAKÜLTESİ DERGİSİ, 2005, 18(2), 157-162 CHLOROPLAST matK GENE PHYLOGENY OF SOME IMPORTANT SPECIES OF PLANTS Ayşe Gül İNCE1 Mehmet KARACA2 A. Naci ONUS1 Mehmet BİLGEN2 1Akdeniz University Faculty of Agriculture Department of Horticulture, 07059 Antalya, Turkey 2Akdeniz University Faculty of Agriculture Department of Field Crops, 07059 Antalya, Turkey Correspondence addressed E-mail: [email protected] Abstract In this study using the chloroplast matK DNA sequence, a chloroplast-encoded locus that has been shown to be much more variable than many other genes, from one hundred and forty two plant species belong to the families of 26 plants we conducted a study to contribute to the understanding of major evolutionary relationships among the studied plant orders, families genus and species (clades) and discussed the utilization of matK for molecular phylogeny. Determined genetic relationship between the species or genera is very valuable for genetic improvement studies. The chloroplast matK gene sequences ranging from 730 to 1545 nucleotides were downloaded from the GenBank database. These DNA sequences were aligned using Clustal W program. We employed the maximum parsimony method for phylogenetic reconstruction using PAUP* program. Trees resulting from the parsimony analyses were similar to those generated earlier using single or multiple gene analyses, but our analyses resulted in strict consensus tree providing much better resolution of relationships among major clades. We found that gymnosperms (Pinus thunbergii, Pinus attenuata and Ginko biloba) were different from the monocotyledons and dicotyledons. We showed that Cynodon dactylon, Panicum capilare, Zea mays and Saccharum officiarum (all are in the C4 metabolism) were improved from a common ancestors while the other cereals Triticum Avena, Hordeum, Oryza and Phalaris were evolved from another or similar ancestors. -
Pima County Plant List (2020) Common Name Exotic? Source
Pima County Plant List (2020) Common Name Exotic? Source McLaughlin, S. (1992); Van Abies concolor var. concolor White fir Devender, T. R. (2005) McLaughlin, S. (1992); Van Abies lasiocarpa var. arizonica Corkbark fir Devender, T. R. (2005) Abronia villosa Hariy sand verbena McLaughlin, S. (1992) McLaughlin, S. (1992); Van Abutilon abutiloides Shrubby Indian mallow Devender, T. R. (2005) Abutilon berlandieri Berlandier Indian mallow McLaughlin, S. (1992) Abutilon incanum Indian mallow McLaughlin, S. (1992) McLaughlin, S. (1992); Van Abutilon malacum Yellow Indian mallow Devender, T. R. (2005) Abutilon mollicomum Sonoran Indian mallow McLaughlin, S. (1992) Abutilon palmeri Palmer Indian mallow McLaughlin, S. (1992) Abutilon parishii Pima Indian mallow McLaughlin, S. (1992) McLaughlin, S. (1992); UA Abutilon parvulum Dwarf Indian mallow Herbarium; ASU Vascular Plant Herbarium Abutilon pringlei McLaughlin, S. (1992) McLaughlin, S. (1992); UA Abutilon reventum Yellow flower Indian mallow Herbarium; ASU Vascular Plant Herbarium McLaughlin, S. (1992); Van Acacia angustissima Whiteball acacia Devender, T. R. (2005); DBGH McLaughlin, S. (1992); Van Acacia constricta Whitethorn acacia Devender, T. R. (2005) McLaughlin, S. (1992); Van Acacia greggii Catclaw acacia Devender, T. R. (2005) Acacia millefolia Santa Rita acacia McLaughlin, S. (1992) McLaughlin, S. (1992); Van Acacia neovernicosa Chihuahuan whitethorn acacia Devender, T. R. (2005) McLaughlin, S. (1992); UA Acalypha lindheimeri Shrubby copperleaf Herbarium Acalypha neomexicana New Mexico copperleaf McLaughlin, S. (1992); DBGH Acalypha ostryaefolia McLaughlin, S. (1992) Acalypha pringlei McLaughlin, S. (1992) Acamptopappus McLaughlin, S. (1992); UA Rayless goldenhead sphaerocephalus Herbarium Acer glabrum Douglas maple McLaughlin, S. (1992); DBGH Acer grandidentatum Sugar maple McLaughlin, S. (1992); DBGH Acer negundo Ashleaf maple McLaughlin, S. -
Japanese Sunflower Tithonia Diversifolia
Invasive plant Japanese sunflower Tithonia diversifolia Japanese sunflower is native to Central America. It is a Legal requirements serious environmental weed, forming dense thickets and out-competing native vegetation. Japanese sunflower is not a prohibited or restricted invasive plant under the Biosecurity Act 2014. However, Japanese sunflower is commonly a weed on roadsides by law, everyone has a general biosecurity obligation and embankments in coastal Queensland and northern (GBO) to take reasonable and practical steps to minimise coastal New South Wales. It is widespread and common the risks associated with invasive plants under their in far north Queensland, particularly on roadsides, control. embankments, unmanaged lands and fire degraded hillsides. Local governments must have a biosecurity plan that A similar species Tithonia rotundifolia is known as Mexican covers invasive plants in their area. This plan may include sunflower. This weed is smaller in height and flower size, actions to be taken on certain species. Some of these and its distribution as an environmental weed is similar to actions may be required under local laws. Contact your Japanese sunflower in Queensland but not as common in local government for more information. New South Wales. Description situations specified on the product labels. A permit held by the Department of Agriculture and Fisheries allows Japanese sunflower stands up to to 3 m. Flowers are people generally to use some herbicide products to control sunflower-like heads up to 10 cm across, with yellow flower Japanese sunflower as an environmental weed in various centres and reddish-orange petals 4–5 cm long. The stems situations. -
Sfblake and Tithonia Diversifolia
Prospective agents for the biological control of Tithonia rotundifolia (Mill.) S.F.Blake and Tithonia diversifolia (Hemsl.) A.Gray (Asteraceae) in South Africa D.O. Simelane1*, K.V. Mawela1 & A. Fourie2 1Agricultural Research Council-Plant Protection Research Institute, Private Bag X134, Queenswood, 0121 South Africa 2Agricultural Research Council-Plant Protection Research Institute, Private Bag X5017 Stellenbosch, 7599 South Africa Starting in 2007, two weedy sunflower species, Tithonia rotundifolia (Mill.) S.F.Blake and Tithonia diversifolia (Hemsl.) A.Gray (Asteraceae: Heliantheae), were targeted for biological control in South Africa. Surveys conducted in their native range (Mexico) revealed that there were five potential biological control agents for T.rotundifolia, and three of these are currently undergoing host-specificity and performance evaluations in South Africa. Two leaf-feeding beetles, Zygogramma signatipennis (Stål) and Zygogramma piceicollis (Stål) (Coleoptera: Chrysomelidae), are the most promising biological control agents for T. rotundifolia: prelimi- nary host-specificity trials suggest that they are adequately host-specific. The stem-boring beetle, Lixus fimbriolatus Boheman (Coleoptera: Curculionidae), is also highly damaging to T. rotundifolia, but its host range is yet to be determined. Two other stem-boring beetles, Canidia mexicana Thomson (Coleoptera: Cerambycidae) and Rhodobaenus auctus Chevrolat (Coleoptera: Curculionidae), have also been recorded on T. rotundifolia, and these will be considered for further testing if L. fimbriolatus is found to be unsuitable for release in South Africa. Only two insect species were imported as candidate agents on T. diversifolia, the leaf-feeding butterfly Chlosyne sp. (Lepidoptera: Nymphalidae), and an unidentified stem-boring moth (Lepidoptera: Tortricidae): the latter was tested in quarantine but rejected because it attacked several sunflower cultivars. -
Evaluation of Locally-Adapted Native Seed Sources and Impacts of Livestock Grazing for Restoration of Historic Oil Pad Sites in South Texas Anthony D
RESEARCH ARTICLE Evaluation of Locally-Adapted Native Seed Sources and Impacts of Livestock Grazing for Restoration of Historic Oil Pad Sites in South Texas Anthony D. Falk, Keith A. Pawelek, Forrest S. Smith, Verl Cash and Matthew Schnupp ABSTRACT Oil and gas activities, particularly road and drilling pad construction, impact large acreages of native rangelands across the country. Many landowners attempt to restore the pad sites of historic wells to native vegetation with varying results. To test the ability of a locally-adapted, native seed mix, made up of grasses, forbs, and legumes, we attempted to restore four former oil and gas wells to their historic grassland state. Adding to the complexity of the restoration process, these pads were located within large grazing units, making it unfeasible to exclude grazing. We evaluated the ability of the native seed mix to establish and persist, and the effects of grazing by cattle the on the restored sites for two years after planting. By seven months post seeding, we were able to establish restored species density of ≥ 0.9 seeded plants/m2, comprising of an average of eight different species. Cattle grazing had little effect on the density of seeded species. Cattle grazing did have minor effects on species composition; however, these effects are not likely to create any long term effects on species composition. These results are promising to landowners attempting to perform native grassland restoration following oil and gas activities in South Texas, even when livestock exclusion is impractical. Keywords: diversity, drill seeding, ecotypic, seed mix, South Texas natives program Restoration Recap • • Historic oil and gas well pads have traditionally been very historic oil and gas well pad sites even during drought difficult to restore to native vegetation in South Texas; our and with continued grazing within a larger grazing unit. -
Survey of Members of Family Asteraceae in Daund Tahsil from Pune District (M.S.), India
IJISET - International Journal of Innovative Science, Engineering & Technology, Vol. 3 Issue 7, July 2016 ISSN (Online) 2348 – 7968 | Impact Factor (2015) - 4.332 www.ijiset.com Survey of Members of Family Asteraceae in Daund Tahsil from Pune District (M.S.), India. 1 2 J.G. BagalP P and S. S.DeokuleP 1 P Head,P Department of Botany, E. S. Divekar College, Varvand, Tal. Daund, Dist. Pune - 412215. (M.S.), India.E-mail: [email protected] Mob. 09423532398. 2 P P Professor, Department of Botany, Savitribai Phule Pune University, Pune – 411007. (M.S.) India. ABSTRACT The regional floristic studies are very important and it can be achieved by exploration of smaller areas. This is useful in the revision of existing flora. The present work based upon the exploration and survey of members of family Asteraceae in Daund Tahsil from Pune district. Daund Tahsil lies in o o Pune district of Maharashtra state, India.. This region extent from 18P P 18’ to 18 P P 41’ North Latitude o o and 74 P P 07’ to 74 P P 51’ East Longitude, covering an area of 1289.86 Sq. Km. (128986 ha.) according to 2011 census. The average height of the study area is 554 meters from mean sea level. This region experience semi-arid climate. Frequent study tours were conducted within the study area during the year 2012-2015 for the collection and documentation of members of family Asteraceae. Plant exploration was conducted to determine plant species of family Asteraceae . The present paper deals with the 43 species belonging to 35 genera of family Asteraceae recorded from Daund Tahsil. -
Caliwomenbotany00hollrich.Pdf
88/51 Regional Oral History Office University of California The Bancroft Library Berkeley, California CALIFORNIA WOMEN IN BOTANY Annetta Carter UC Herbarium Botanist, Collector and Interpreter of Baja California Plants Mary DeDecker Botanist and Conservationist of the Inyo Region Elizabeth McClintock California Academy of Sciences Curator, Ornamental Plant Specialist With Interview Introductions by Lincoln Constance, Betty Gilchrist, Peter Rowlands, John Hunter Thomas Interviews Conducted by Carol Holleuffer 1985 Copyright (c) 1987 by The Regents of the University of California This manuscript is made available for research purposes. No part of the manuscript may be quoted for publication without the written permission of the Director of The Bancroft Library of the University of California at Berkeley. Requests for permission to quote for publication should be addressed to the Regional Oral History Office, 486 Library, and should include identification of the specific passages to be quoted, anticipated use of the passages, and identification of the user. It is recommended that this oral history be cited as follows: To cite the volume: California Women in Botany, an oral history conducted in 1985, Regional Oral History Office, The Bancroft Library, University of California, Berkeley, 1987. To cite individual interview: Annetta Carter, "UC Herbarium Botanist, Collector and Interpreter of Baja California Plants," an oral history conducted 1985 by Carol Holleuffer, in California Women in Botany, Regional Oral History Office, The Bancroft Library, University of California, Berkeley, 1987. Copy No. /| OAKLAND THE DAILY CALIFORNIAN TRIBUNE 1991 May 17, 1991 May 16, I ' . .-,<. TVjW'-wiKjs Annetta Carter, ^UC'Berkeleyl 'botanist dies UC botanist ' I" W-! f . -: ^.,.v X **\; -':. -
December 2012 Number 1
Calochortiana December 2012 Number 1 December 2012 Number 1 CONTENTS Proceedings of the Fifth South- western Rare and Endangered Plant Conference Calochortiana, a new publication of the Utah Native Plant Society . 3 The Fifth Southwestern Rare and En- dangered Plant Conference, Salt Lake City, Utah, March 2009 . 3 Abstracts of presentations and posters not submitted for the proceedings . 4 Southwestern cienegas: Rare habitats for endangered wetland plants. Robert Sivinski . 17 A new look at ranking plant rarity for conservation purposes, with an em- phasis on the flora of the American Southwest. John R. Spence . 25 The contribution of Cedar Breaks Na- tional Monument to the conservation of vascular plant diversity in Utah. Walter Fertig and Douglas N. Rey- nolds . 35 Studying the seed bank dynamics of rare plants. Susan Meyer . 46 East meets west: Rare desert Alliums in Arizona. John L. Anderson . 56 Calochortus nuttallii (Sego lily), Spatial patterns of endemic plant spe- state flower of Utah. By Kaye cies of the Colorado Plateau. Crystal Thorne. Krause . 63 Continued on page 2 Copyright 2012 Utah Native Plant Society. All Rights Reserved. Utah Native Plant Society Utah Native Plant Society, PO Box 520041, Salt Lake Copyright 2012 Utah Native Plant Society. All Rights City, Utah, 84152-0041. www.unps.org Reserved. Calochortiana is a publication of the Utah Native Plant Society, a 501(c)(3) not-for-profit organi- Editor: Walter Fertig ([email protected]), zation dedicated to conserving and promoting steward- Editorial Committee: Walter Fertig, Mindy Wheeler, ship of our native plants. Leila Shultz, and Susan Meyer CONTENTS, continued Biogeography of rare plants of the Ash Meadows National Wildlife Refuge, Nevada. -
Chromosome Numbers in Compositae, XII: Heliantheae
SMITHSONIAN CONTRIBUTIONS TO BOTANY 0 NCTMBER 52 Chromosome Numbers in Compositae, XII: Heliantheae Harold Robinson, A. Michael Powell, Robert M. King, andJames F. Weedin SMITHSONIAN INSTITUTION PRESS City of Washington 1981 ABSTRACT Robinson, Harold, A. Michael Powell, Robert M. King, and James F. Weedin. Chromosome Numbers in Compositae, XII: Heliantheae. Smithsonian Contri- butions to Botany, number 52, 28 pages, 3 tables, 1981.-Chromosome reports are provided for 145 populations, including first reports for 33 species and three genera, Garcilassa, Riencourtia, and Helianthopsis. Chromosome numbers are arranged according to Robinson’s recently broadened concept of the Heliantheae, with citations for 212 of the ca. 265 genera and 32 of the 35 subtribes. Diverse elements, including the Ambrosieae, typical Heliantheae, most Helenieae, the Tegeteae, and genera such as Arnica from the Senecioneae, are seen to share a specialized cytological history involving polyploid ancestry. The authors disagree with one another regarding the point at which such polyploidy occurred and on whether subtribes lacking higher numbers, such as the Galinsoginae, share the polyploid ancestry. Numerous examples of aneuploid decrease, secondary polyploidy, and some secondary aneuploid decreases are cited. The Marshalliinae are considered remote from other subtribes and close to the Inuleae. Evidence from related tribes favors an ultimate base of X = 10 for the Heliantheae and at least the subfamily As teroideae. OFFICIALPUBLICATION DATE is handstamped in a limited number of initial copies and is recorded in the Institution’s annual report, Smithsonian Year. SERIESCOVER DESIGN: Leaf clearing from the katsura tree Cercidiphyllumjaponicum Siebold and Zuccarini. Library of Congress Cataloging in Publication Data Main entry under title: Chromosome numbers in Compositae, XII. -
Hybrid Speciation with External Barriers: Encelia
Hybridspeciationwithexternalbarriers: Encelia (Asteraceae:Heliantheae),acasestudy CurtisClarkandGerardJ.Allan BiologicalSciences,CaliforniaStatePolytechnicUniversity,Pomona,andRanchoSantaAnaBotanicGarden Abstract Most well-documented cases of homoploid hybrid speciation follow the recombinational model, in which the new species passes through a period of genetic rearrangement and reduced fertility. An alternate model has been presented, in which external barriers to gene flow prevent genetic swamping of the new species by the parent species. The two documented cases of hybrid speciation in Encelia (E. virginensis and E. asperifolia) appear to follow this model. In both cases, the species of hybrid origin are morphologically intermediate to the parents, and E. virginensis is also similar to artificial F1 hybrids. In both cases, the species of hybrid origin share random amplified polymorphic DNA (RAPD) markers with each of the parent species. A single sampled individual of each species of hybrid origin combines the nrDNA internal transcribed spacer (ITS) sequences of its parents. All North American Encelia species are obligate outcrossers with n = 18 chromosomes, and in cultivation they form fertile hybrids apparently in all combinations. In the natural environment, plants of F1 phenotype are locally common, but backcross progeny are rare, being confined primarily to areas of human disturbance, and there is no evidence of introgression. Progeny tests in one case of natural hybridisation suggested that backcross progeny are eliminated after seed dispersal. This suggests that the F1 phenotype represents a “local optimum” on the selective landscape, and that the selection against backcrosses strongly reduces gene flow between the incipient hybrid species and the parents. Espèciation hybride avec barrières externes: Encelia (Asteraceae: Heliantheae), une étude de cas La plupart des cas bien documentés de l’espèciation homoploïde hybride suivent le modèle recombinaisonal, où l’espèce nouvelle passe par une durée de réarrangement génétique et la fertilité reduite. -
Vermilion Flycatcher
THE QUARTERLY NEWS MAGAZINE OF TUCSON AUDUBON SOCIETY | TUCSONAUDUBON.ORG VermFLYCATCHERilion July–September 2014 | Volume 59, Number 3 Birding Economics Patagonia’s Ecotourism ● Tucson Bird & Wildlife Festival What’s in a Name: Vermilion Flycatcher ● Southeastern Arizona’s Summer Sparrows Features THE QUARTERLY NEWS MAGAZINE OF TUCSON AUDUBON SOCIETY | TUCSONAUDUBON.ORG 12 What’s in a Name: Vermilion Flycatcher VermFLYCATCHERilion 13 Southeastern Arizona’s Summer July–September 2014 | Volume 59, Number 3 Sparrows 14 Hold That Note Tucson Audubon promotes the protection and stewardship of southern Arizona’s biological diversity 15 Another Important Step in Patagonia’s through the study and enjoyment of birds and the Ecotourism Efforts places they live. Founded in 1949, Tucson Audubon is southern Arizona’s leading non-profit engaging people 16 It’s the Fourth! in the conservation of birds and their habitats. 17 The Grass is Always Greener in Southeastern Arizona? Tucson Audubon Society 300 E. University Blvd. #120, Tucson, AZ 85705 629-0510 (voice) or 623-3476 (fax) Departments All phone numbers are area code 520 unless otherwise stated. tucsonaudubon.org 4 Events and Classes Birding Economics 5 Events Calendar Tucson Bird & Wildlife Festival ● Patagonia’s Ecotourism Board Officers & Directors SEAZ’s Summer Sparrows ● What’s in a Name: Vermilion Flycatcher President Cynthia Pruett 5 Living with Nature Lecture Series Vice President Bob Hernbrode Secretary Ruth Russell 6 News Roundup FRONT COVER: Sulphur-bellied Flycatcher in Ramsey Treasurer Richard Carlson 18 Conservation and Education News Directors at Large Matt Bailey, Ardeth Barnhart, Canyon by Muriel Neddermeyer. Muriel is a marketing Gavin Bieber, Les Corey, Edward Curley, Jennie Duberstein, 24 Birding Travel from Our Business Partners professional and mother of two teenagers.